Download Vipin Kumar Computer Science and Engineering Atluri, Gowtham

Vipin Kumar
Computer Science and Engineering
Atluri, Gowtham, Michael Steinbach, Kelvin O. Lim, Vipin Kumar, and Angus
MacDonald. 2015. Connectivity cluster analysis for discovering discriminative
subnetworks in schizophrenia. Human Brain Mapping 36 (2) (FEB 01): 756-67.
Ii, D. L. Gonzalez, M. P. Angus, I. K. Tetteh, G. A. Bello, K. Padmanabhan, S. V.
Pendse, S. Srinivas, et al. [Vipin Kumar] 2015. On the data-driven inference of
modulatory networks in climate science: An application to West African rainfall.
Nonlinear Processes in Geophysics 22 (1) (JAN 13): 33-46.
Bhargava, Maneesh, Trisha L. Becker, Kevin J. Viken, Pratik D. Jagtap, Sanjoy Dey,
Michael S. Steinbach, Baolin Wu, et al. [Vipin Kumar] 2014. Proteomic profiles in
acute respiratory distress syndrome differentiates survivors from non-survivors. PloS
One 9, (10) (OCT 07), 10.1371/journal.pone.0109713.
Chandola, Varun, Varun Mithal, and Vipin Kumar. 2014. A reference based analysis
framework for understanding anomaly detection techniques for symbolic sequences.
Data Mining and Knowledge Discovery 28 (3) (MAY 01): 702-35.
Faghmous, James H., Arindam Banerjee, Shashi Shekhar, Michael Steinbach, Vipin
Kumar, Auroop R. Ganguly, and Nagiza Samatova. 2014. Theory-guided data science
for climate change. Computer 47 (11) (JAN 01): 74-8.
Faghmous, James H., Matthew Le, Hung Nguyen, and Vipin Kumar. 2014. Spatiotemporal consistency as a means to identify unlabeled objects in a continuous data
field. Proceedings of the National Conference on Artificial Intelligence. 2014;1:410416.
Kambatla, Karthik, Giorgos Kollias, Vipin Kumar, and Ananth Grama. 2014. Trends in
big data analytics. Journal of Parallel and Distributed Computing 74 (7) (JAN 01):
2561-73.
Landman, Sean R., Tae H. Hwang, Kevin A. T. Silverstein, Yingming Li, Scott M.
Dehm, Michael Steinbach, and Vipin Kumar. 2014. SHEAR: Sample Heterogeneity
Estimation and Assembly by Reference. BMC Genomics 15, (1) (JAN 29),
10.1186/1471-2164-15-84.
Paunic, Vanja, Michael Steinbach, Abeer Madbouly, and Vipin Kumar. 2014. Amb-EM:
A SNP-based prediction of HLA alleles using ambiguous HLA data. ACM BCB 2014
- 5th ACM Conference on Bioinformatics, Computational Biology, and Health
Informatics. 2014:104-113. 10.1145/2649387.2649408.
Steinbach, Michael, Sean Landman, Vipin Kumar, and Haoyu Yu. 2014. Identification of
co-occurring insertions in cancer genomes using association analysis. International
Journal of Data Mining and Bioinformatics 10 (1) (JAN 01): 65-82.
Atluri, Gowtham, Kanchana Padmanabhan, Gang Fang, Michael Steinbach, Jeffrey R.
Petrella, Kelvin Lim, Angus MacDonald, Nagiza F. Samatova, P. Murali
Doraiswamy, and Vipin Kumar. 2013. Complex biomarker discovery in
Vipin Kumar
Computer Science and Engineering
neuroimaging data: Finding a needle in a haystack. NeuroImage. Clinical 3, (JAN
01), 10.1016/j.nicl.2013.07.004.
Bhargava, Maneesh, Sanjoy Dey, Trisha Becker, Michael Steinbach, Baolin Wu, Sang
Mee Lee, LeeAnn Higgins, et al. [Vipin Kumar] 2013. Protein expression profile of
rat type two alveolar epithelial cells during hyperoxic stress and recovery. American
Journal of Physiology. Lung Cellular and Molecular Physiology 305, (9) (NOV 01),
10.1152/ajplung.00079.2013.
Faghmous, James H., Matthew Le, Muhammed Uluyol, Vipin Kumar, and Snigdhansu
Chatterjee. 2013. A parameter-free spatio-temporal pattern mining model to catalog
global ocean dynamics. Proceedings - IEEE International Conference on Data
Mining, ICDM. 2013:151-160. 10.1109/ICDM.2013.162.
Faghmous, James H., Muhammed Uluyol, Luke Styles, Matthew Le, Varun Mithal,
Shyam Boriah, and Vipin Kumar. 2013. Multiple hypothesis object tracking for
unsupervised self-learning: An ocean eddy tracking application. Proceedings - 2012
Conference on Intelligent Data Understanding, CIDU 2012. 2012:96-103.
10.1109/CIDU.2012.6382189.
Fang, Gang, Diana Munera, David I. Friedman, Anjali Mandlik, Michael C. Chao,
Onureena Banerjee, Zhixing Feng, et al. [Vipin Kumar] 2013. Erratum: Genome-wide
mapping of methylated adenine residues in pathogenic Escherichia coli using singlemolecule real-time sequencing (Nature Biotechnology (2012) 30 (1232-1239)).
Nature Biotechnology 31 (6) (JUN 01): 566.
Gonzalez, Doel L. II, Saurabh V. Pendse, Kanchana Padmanabhan, Michael P. Angus,
Isaac K. Tetteh, Shashank Srinivas, Andrea Villanes, Fredrick Semazzi, Vipin
Kumar, and Nagiza F. Samatova. 2013. Coupled heterogeneous association rule
mining (CHARM): Application toward inference of modulatory climate relationships.
Proceedings - IEEE International Conference on Data Mining, ICDM. 2013:10551060. 10.1109/ICDM.2013.142.
Hwang, Tae Hyun, Gowtham Atluri, Rui Kuang, Vipin Kumar, Timothy K. Starr, Kevin
A. T. Silverstein, Peter M. Haverty, Zemin Zhang, and Jinfeng Liu. 2013. Large-scale
integrative network-based analysis identifies common pathways disrupted by copy
number alterations across cancers. BMC Genomics 14, (1) (JUL 03), 10.1186/14712164-14-440.
Kawale, Jaya, Stefan Liess, Arjun Kumar, Michael Steinbach, Peter Snyder, Vipin
Kumar, Auroop R. Ganguly, Nagiza F. Samatova, and Fredrick Semazzi. 2013. A
graph-based approach to find teleconnections in climate data. Statistical Analysis and
Data Mining 6 (3) (JUN 01): 158-79.
Melnyk, Igor, Pranjul Yadav, Michael Steinbach, Jaideep Srivastava, Vipin Kumar, and
Arindam Banerjee. 2013. Detection of precursors to aviation safety incidents due to
human factors. Proceedings - IEEE 13th International Conference on Data Mining
Workshops, ICDMW 2013. 2013:407-412. 10.1109/ICDMW.2013.55.
Vipin Kumar
Computer Science and Engineering
Menary, Kyle, Paul F. Collins, James N. Porter, Ryan Muetzel, Elizabeth A. Olson, Vipin
Kumar, Michael Steinbach, Kelvin O. Lim, and Monica Luciana. 2013. Associations
between cortical thickness and general intelligence in children, adolescents and young
adults. Intelligence 41 (5) (SEP 01): 597-606.
Paunic, Vanja, Michael Steinbach, Abeer Madbouly, and Vipin Kumar. 2013. Evaluation
of label dependency for the prediction of HLA genes. Proceedings - 12th IEEE
International Conference on Data Mining Workshops, ICDMW 2012. 2012:964-971.
10.1109/ICDMW.2012.74.
Poppe, Andrew B., Krista Wisner, Gowtham Atluri, Kelvin O. Lim, Vipin Kumar, and
Angus W. MacDonald III. 2013. Toward a neurometric foundation for probabilistic
independent component analysis of fMRI data. Cognitive, Affective & Behavioral
Neuroscience 13 (3) (SEP 01): 641-59.
Schadt, Eric E., Onureena Banerjee, Gang Fang, Zhixing Feng, Wing H. Wong, Xuegong
Zhang, Andrey Kislyuk, et al. [Vipin Kumar] 2013. Modeling kinetic rate variation in
third generation DNA sequencing data to detect putative modifications to DNA bases.
Genome Research 23, (1) (JAN 01), 10.1101/gr.136739.111.
Vatsavai, Ranga Raju, Latifur Khan, Sanjay Ranka, Varun Chandola, Vipin Kumar,
Shaun Gleason, Barney McCabe, et al. 2013. Preface to the fourth ICDM
international workshop on knowledge discovery using cloud and distributed
computing platforms. Proceedings - IEEE 13th International Conference on Data
Mining Workshops, ICDMW 2013. 2013:xliv-xlv. 10.1109/ICDMW.2013.181.
Brugere, Ivan, Karsten Steinhaeuser, Shyam Boriah, and Vipin Kumar. 2012.
Approximate search on massive spatiotemporal datasets. Proceedings - 12th IEEE
International Conference on Data Mining Workshops, ICDMW 2012. 2012:773-780.
10.1109/ICDMW.2012.27.
Chandola, Varun, Arindam Banerjee, and Vipin Kumar. 2012. Anomaly detection for
discrete sequences: A survey. IEEE Transactions on Knowledge and Data
Engineering 24 (5) (JAN 01): 823-39.
Chandola, Varun, Karsten Steinhaeuser, Benjamin Martin, Vipin Kumar, Brian Worley,
and Barney McCabe. 2012. Preface: International workshop on knowledge discovery
using cloud and distributed computing platforms. Proceedings - 12th IEEE
International Conference on Data Mining Workshops, ICDMW 2012. 2012:xxxvxxxvi. 10.1109/ICDMW.2012.152.
Chen, Xi C., Anuj Karpatne, Yashu Chamber, Varun Mithal, Michael Lau, Karsten
Steinhaeuser, Shyam Boriah, et al. [Vipin Kumar] 2012. A new data mining
framework for forest fire mapping. Proceedings - 2012 Conference on Intelligent
Data Understanding, CIDU 2012. 2012:104-111. 10.1109/CIDU.2012.6382190.
Das, Debasish, Auroop Ganguly, Snigdhansu Chatterjee, Vipin Kumar, and Zoran
Obradovic. 2012. Spatially penalized regression for dependence analysis of rare
Vipin Kumar
Computer Science and Engineering
events: A study in precipitation extremes. International Geoscience and Remote
Sensing Symposium (IGARSS). 2012:1948-1951. 10.1109/IGARSS.2012.6351120.
Dey, Sanjoy, Gowtham Atluri, Michael Steinbach, Kelvin Lim, Angus III MacDonald,
and Vipin Kumar. 2012. A pattern mining based integrative framework for biomarker
discovery. 2012 ACM Conference on Bioinformatics, Computational Biology and
Biomedicine, BCB 2012. 2012:498-505. 10.1145/2382936.2383000.
Faghmous, James H., Yashu Chamber, Shyam Boriah, Stefan Liess, Vipin Kumar, Frode
Vikebø, and Michel Dos Sontos Mesquita. 2012. A novel and scalable spatiotemporal technique for ocean eddy monitoring. Proceedings of the National
Conference on Artificial Intelligence. 2012;1:281-287.
Faghmous, James H., Luke Styles, Varun Mithal, Shyam Boriah, Stefan Liess, Vipin
Kumar, Frode Vikebo, and Michel Dos Santos Mesquita. 2012. EddyScan: A
physically consistent ocean eddy monitoring application. Proceedings - 2012
Conference on Intelligent Data Understanding, CIDU 2012. 2012:96-103.
10.1109/CIDU.2012.6382189.
Fang, Gang, Majda Haznadar, Wen Wang, Haoyu Yu, Michael Steinbach, Timothy R.
Church, William S. Oetting, Brian van Ness, and Vipin Kumar. 2012. High-order
SNP combinations associated with complex diseases: Efficient discovery, statistical
power and functional interactions. PLoS One 7, (4) (APR 19),
10.1371/journal.pone.0033531.
Fang, Gang, Diana Munera, David I. Friedman, Anjali Mandlik, Michael C. Chao,
Onureena Banerjee, Zhixing Feng, et al. [Vipin Kumar] 2012. Genome-wide mapping
of methylated adenine residues in pathogenic Escherichia coli using single-molecule
real-time sequencing. Nature Biotechnology 30, (12) (DEC 01), 10.1038/nbt.2432.
Fang, Gang, Gaurav Pandey, Wen Wang, Manish Gupta, Michael Steinbach, and Vipin
Kumar. 2012. Mining low-support discriminative patterns from dense and highdimensional data. IEEE Transactions on Knowledge and Data Engineering 24 (2)
(JAN 01): 279-94.
Hwang, Taehyun, Gowtham Atluri, Maoqiang Xie, Sanjoy Dey, Changjin Hong, Vipin
Kumar, and Rui Kuang. 2012. Co-clustering phenome-genome for phenotype
classification and disease gene discovery. Nucleic Acids Research 40, (19) (OCT 01),
10.1093/nar/gks615.
Karpatne, Anuj, Mace Blank, Michael Lau, Shyam Boriah, Karsten Steinhaeuser,
Michael Steinbach, and Vipin Kumar. 2012. Importance of vegetation type in forest
cover estimation. Proceedings - 2012 Conference on Intelligent Data Understanding,
CIDU 2012. 2012:71-78. 10.1109/CIDU.2012.6382203.
Kawale, Jaya, Snigdhansu Chatterjee, Dominick Ormsby, Karsten Steinhaeuser, Stefan
Liess, and Vipin Kumar. 2012. Testing the significance of spatio-temporal
teleconnection patterns. Proceedings of the ACM SIGKDD International Conference
Vipin Kumar
Computer Science and Engineering
on Knowledge Discovery and Data Mining. 2012:642-650.
10.1145/2339530.2339634.
Kawale, Jaya, Stefan Liess, Vipin Kumar, Upmanu Lall, and Auroop Ganguly. 2012.
Mining time-lagged relationships in spatio-temporal climate data. Proceedings - 2012
Conference on Intelligent Data Understanding, CIDU 2012. 2012:130-135.
10.1109/CIDU.2012.6382194.
Lakshminarasimhan, Sriram, Prabhat Kumar, Wei-Keng Liao, Alok Choudhary, Vipin
Kumar, and Nagiza F. Samatova. 2012. On the path to sustainable, scalable, and
energy-efficient data analytics: Challenges, promises, and future directions 2012
International Green Computing Conference, IGCC 2012. 2012.
10.1109/IGCC.2012.6322265.
Mithal, Varun, Zachary O'Connor, Karsten Steinhaeuser, Shyam Boriah, Vipin Kumar,
Christopher S. Potter, and Steven A. Klooster. 2012. Time series change detection
using segmentation: A case study for land cover monitoring. Proceedings - 2012
Conference on Intelligent Data Understanding, CIDU 2012. 2012:63-70.
10.1109/CIDU.2012.6382202.
Paunic, Vanja, Michael Steinbach, Vipin Kumar, and Martin Maiers. 2012. Prediction of
HLA genes from SNP data and HLA haplotype frequencies. 2013 ACM Conference
on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB
2013. 2013:296-305. 10.1145/2506583.2506632.
Pendse, Saurabh V., Isaac K. Tetteh, Fredrick Semazzi, Vipin Kumar, and Nagiza F.
Samatova. 2012. Toward data-driven, semi-automatic inference of phenomenological
physical models: Application to eastern Sahel rainfall. Proceedings of the 12th SIAM
International Conference on Data Mining, SDM 2012. 2012:35-46.
Chamber, Y., A. Garg, V. Mithal, I. Brugere, M. Lau, V. Krishna, S. Boriah, et al. 2011.
A novel time series based approach to detect gradual vegetation changes in forests.
Paper presented at 2011 NASA Conference on Intelligent Data Understanding
(CIDU).
Chen, X., V. Mithal, S. R. Vangala, I. Brugere, S. Boriah, and Vipin Kumar. 2011. A
study of time series noise reduction techniques in the context of land cover change
detection. Paper presented at 2011 NASA Conference on Intelligent Data
Understanding (CIDU).
Garg, A., L. Manikonda, S. Kumar, V. Krishna, S. Boriah, M. Steinbach, Vipin Kumar,
D. Toshniwal, C. Potter, and S. Klooster. 2011. Model-free time series segmentation
approach for land cover change detection. Paper presented at 2011 NASA Conference
on Intelligent Data Understanding (CIDU).
Garg, A., V. Mithal, Y. Chamber, I. Brugere, V. Chaudhari, M. Dunham, V. Krishna, et
al. 2011. GOPHER: Global observation of planetary health and ecosystem resources.
Paper presented at IEEE Geoscience and Remote Sensing Symposium.
Vipin Kumar
Computer Science and Engineering
Kawale, J., M. Steinbach , and Vipin Kumar. 2011. Discovering dynamic dipoles in
climate data. Paper presented at SIAM International Conference on Data Mining
(SDM).
Mithal, V., A. Garg, S. Boriah, M. Steinbach, Vipin Kumar, C. Potter, S. Klooster, and J.
C. Castilla-Rubio. 2011. Monitoring global forest cover using data mining. ACM
Transactions on Intelligent Systems and Technology 2 (4).
Mithal, V., A. Garg, I. Brugere, S. Boriah, Vipin Kumar, M. Steinbach, C. Potter, and S.
Klooster. 2011. Incorporating natural variation into time series-based land cover
change identification. Paper presented at 2011 NASA Conference on Intelligent Data
Understanding (CIDU).
Sencan, H., Z. Chen, W. Hendrix, T. Pansombut, F. Semazzi, A. Kumar Choudhardy
Vipin, N. F. Samatoya, and A. Melechko. 2011. Classification of emerging extreme
event tracks in multi-variate spatio-temporal physical systems using dynamic network
structures: Application to hurricane track prediction. Paper presented at 22nd
International Joint Conference on Artificial Intelligence.
Sencan, H., Z. Chen, W. Hendrix, T. Pansombut, F. Semazzi, A. Choudhary, Vipin
Kumar, N. F. Samatoya, and A. Melechko. 2011. Classification of emerging extreme
event tracks in multi-variate spatio-temporal physical systems using dynamic network
structures: Application to hurricane track prediction. Paper presented at 22nd
International Joint Conference on Artificial Intelligence.
Boriah, S., V. Mithal, A. Garg, Vipin Kumar, M. Steinbach, C. Potter, and S. Klooster.
2010. A comparative study of algorithms for land cover change. Paper presented at
Annual Conference on Intelligent Data Understanding (CIDU).
Race, C., M. Steinbach, A. Ganguly, F. Semazzi, and Vipin Kumar. 2010. A knowledge
discovery strategy for relating sea surface temperatures to frequencies of tropical
storms and generating predictions of hurricanes under 21st-century global warming
scenarios. Paper presented at Annual Conference on Intelligent Data Understanding
(CIDU).