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BRIGHT BLUE Funding Update August 2015 Anne Johnston Why our partnership matters Hugo was diagnosed with neuroblastoma when he was just 9 months old and at six years of age is still living with his cancer. He is currently recovering from surgery to remove most of a tumour that invaded his spinal column. • Cancer is the largest killer of children from disease in Australia • More than 650 children are diagnosed in Australia each year and sadly, nearly 3 children will die from this terrible disease • While the overall survival rate has increased from zero 60 years ago to over 80 per cent today, there are still some aggressive cancers that have much lower survival rates • Neuroblastoma, for example, is a cancer that only occurs in children and the majority present with advanced stage aggressive cancers. For these children the survival rate is less than 50% • Even for children who survive, 70% of children will suffer significant long term side effects due to their treatment and 30% will have severe medical problems as adults such as heart conditions, infertility or secondary cancers caused not by their original cancer but by their treatment RNA Sequencing Project Recap • Bright Blue has donated $295,000 to date to fund an innovative new research project into the causes of neuroblastoma and potential new treatments • 40% of the cases of neuroblastoma have an identified link with a particular protein that enables the cancer to develop • However in 60% of the cases of neuroblastoma there is no evidence of a link to this particular protein, it is critical we understand better what the other causes of neuroblastoma might be • Our project uses leading edge genome typing technology (called RNA sequencing) to improve identification of the specific genetic abnormalities that are linked to neuroblastoma initiation, growth, metastasis and resistance to treatment • Ultimately this will lead to a more personalised approach to treatment of children with neuroblastoma which means we can tailor treatment to their specific genetic type - this is the future for finding the cure What has this project achieved? • Completed next-generation RNA sequencing in 6 patient neuroblastoma cell lines and 69 neuroblastoma tumour tissue samples. • This is the first time this number of neuroblastoma tumours has undergone next generation RNA sequencing in this country. • The information gathered from analysing such a huge amount of data (each child’s tumour generates over 46 gigabytes of data) will ultimately be used in ‘real-time’ on newly diagnosed children with neuroblastoma to identify particular sub-groups to which they belong, according to their tumour’s molecular profile. • This information will eventually allow us to treat each disease with the right combination of drugs, helping to improve the outcome for children with neuroblastoma. • We are extremely grateful for the funding from Bright Blue that has allowed this vital neuroblastoma research to take place, we have made some exciting discoveries and are keen to continue this research. Research Finding 1: RP1X • Sequencing has revealed that 3 genes are dramatically abnormally expressed in patient neuroblastoma cell lines • One particular gene called RP1X (RNA which has never been studied in normal human biology or disease) has been found to: be over expressed in a subset of neuroblastoma tissues induce neuroblastoma cell growth and survival correlate with poor patient survival rates • We have screened 114 anticancer drugs to find the best combinations to target RP1X. THZ1, a novel anticancer drug discovered in 2014 and originally used for lung cancer in adults, in combination with panobinostat, may be effective in killing neuroblastoma cells while leaving healthy cells alone • We have generated pairs of neuroblastoma cells expressing high or low levels of RP1X which are being xenografted into mice to test this combination of anticancer drugs • Successful completion of these experiments may identify a new treatment option for children in this subset Research Finding 2: IGF2BP1 • Collaboration with Martin Luther University confirms that our findings relating to another particular gene in neuroblastoma (IGF2BP1) also to: be over expressed in a subset of neuroblastoma tissues induce neuroblastoma cell growth and survival correlate with poor patient survival rates • IGF2BP1 is known to have a role in controlling the levels of other genes and has previously been reported as a pro-cancer factor, but has not previously been linked to neuroblastoma. • These findings suggest that inhibiting this gene in tumours where the gene has been altered may be a potential therapeutic strategy. This research on IGF2BP1 has now been published by the internationally renowned and prestigious Journal of Clinical Oncology. Research Finding 3: MYCN-AS • We have also identified another novel gene called MYCNAS, which has never previously been studied in normal human biology or in any disease. • Our research shows MYCN-AS is considerably overexpressed in a specific subset of human neuroblastoma tumours, and high levels of MYCN-AS leads to poor patient survival. • We have screened anticancer drugs, and found that JQ1, a novel agent discovered in 2010, considerably reduces MYCN-AS expression, and induces neuroblastoma cell death. • We have further screened 2,690 potential anticancer drugs and have found that vincristine works best with JQ1. • We have had strong results testing this drug combination in our mouse model and are currently analysing tumour tissues from the mice to work out how the drugs specifically kill the neuroblastoma cells. • Successful completion of these experiments may identify a new treatment option for children in this subset Next steps… • Once the entire set of neuroblastoma tumour samples has been sequenced and analysed we will have a clear picture of all the particular genes that have been altered in specific groups of neuroblastoma patients. • We will then evaluate whether these genes are indeed neuroblastoma “drivers” in mice and therefore valuable therapeutic targets, followed by laboratory-based drug sensitivity testing on cells harbouring these altered genes to identify new treatment options for children with aggressive neuroblastoma. • By identifying critical genes that are altered in aggressive neuroblastoma tumours combined with drugs that specifically target these genes, enables the possibility of delivering truly personalised medicine. • The importance of this research thus lies in the potential of providing new and novel therapies to neuroblastoma patients who would otherwise have a dismal outcome We are particularly excited about these results that would not have been possible without the state-of-the-art technology being employed and funding provided by Bright Blue. The Future : Personalised Medicine How will we reach 10 out of 10 survival? “one size does not fit all” Need to tailor treatment – from thousands of potential drugs to one patient, one cancer, one treatment plan. Children’s Cancer Institute to be a central hub for all oncology units in children’s hospitals across Australia All children with aggressive or relapse cancer samples sent to our labs – we will sequence their genome/DNA Screen to identify best possible treatment course for that one child, advise clinician to increase chance of cure The Future : Personalised Medicine How will we reach 10 out of 10 survival? “one size does not fit all” Need to tailor treatment – from thousands of potential drugs to one patient, one cancer, one treatment plan. Children’s Cancer Institute to be a central hub for all oncology units in children’s hospitals across Australia All children with aggressive or relapse cancer samples sent to our labs – we will sequence their genome/DNA Screen to identify best possible treatment course for that one child, advise clinician to increase chance of cure Current model of neuroblastoma therapy The Future: Personalised medicine for the therapy of neuroblastoma Why is this work so important? • 60% of neuroblastoma cases develop without understanding the causes. • Currently the only treatment options are harsh and toxic to these patients • Next-generation RNA sequencing is the most advanced technology in medical research today • It is the most effective technology for identifying and understanding the proteins within these genes • Through this RNA sequencing research we can expect to identify: More personalised treatment approach More effective treatment Better chance of survival Better quality of life Thank you