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Jefferies 2015 Global Healthcare Conference NewLink Genetics Corporation Nasdaq: NLNK November 19, 2015 Forward-Looking Disclaimer These slides contain forward-looking statements. The Company’s actual results may differ materially from those suggested here. Additional information concerning factors that could cause such a difference is contained in the Company’s Annual Report on Form 10-K for the fiscal year ended December 31, 2014 and other prior and subsequent regulatory filings. NASDAQ: NLNK 2 NewLink Genetics Building a Leading Immuno-Oncology Company Industry-leading advanced pipeline across multiple cancer types with 7 product candidates in clinical development from Phase 1 to Phase 3 Unique HyperAcute® Cellular Immunotherapies that suggest clinical activity associated with potent anti-cancer immune responses Potential to have the first product with an FDA approval for the adjuvant treatment of patients with surgically resected pancreatic cancer Multiple small molecules targeting the key IDO checkpoint blockade Well-positioned to execute on our vision of combining checkpoint blockade inhibitors and cellular immunotherapies Founding scientific and business leadership with proven expertise in drug discovery, manufacturing, clinical development, and commercialization Proven success in substantial strategic collaborations ~$200 million in cash with the potential for near-term catalysts Opportunity in infectious diseases 3 Immuno-Oncology The Solution The emerging scientific and clinical consensus is that patients in the future will require both approaches: – Generating a targeted immune response – Disrupting checkpoint blockade Generating a Targeted Immune Response HyperAcute Cellular Immunotherapy (NLNK) and CAR-T cells Disrupting Checkpoint Blockade Enhanced Immune Response IDO inhibitors (NLNK), PD-1, PD-L1, CTLA-4, OX40 antibodies 4 HyperAcute Cellular Immunotherapy Highly Differentiated From Other Immunotherapies Technology derived from serendipitous observation in the clinic that led to unexpected anti-tumor responses HyperAcute mechanism based on potent anti-αGal antibodies that protect humans from zoonotic infection Metabolically active, whole-cell immunotherapy with multiple antigens Does not require tissue from patient (allogeneic) Multi-faceted immune response: antibodies, T cells and eosinophils 5 HyperAcute Cellular Immunotherapy Educating the Immune System to Attack Cancer 1 Pre-Existing “HyperAcute® ” Anti-α-Gal Antibody Response 1 LEADS TO… 2 Humoral Immunity: 2 Anti-Tumor Antibodies 3 3 4 Cellular Immunity: 4 Tumor-specific T cells Cellular Infiltration: Eosinophilia, Anti-Parasitic-Like 6 Leading Pipeline in Immuno-Oncology HyperAcute Cellular Immunotherapy Clinical Development Program HyperAcute Cellular Immunotherapy AGENT Algenpantucel-L Tergenpumatucel-L Dorgenmeltucel-L HyperAcute Prostate HyperAcute Renal TARGET DISEASE DESIGN DETAILS Phase1 Pancreatic cancer (resected) IMPRESS: algenpantucel-L + standard of care; randomized Pancreatic cancer (borderline resectable or locally advanced unresectable) PILLAR: algenpantucel-L + chemotherapy; randomized ENROLLING NSCLC (advanced or metastatic) Tergenpumatucel-L vs docetaxel and controlled for follow-on chemotherapy; phase 2b; randomized ENROLLING Melanoma (advanced) Dorgenmeltucel-L + ipilimumab or PD-1 inhibitors; randomized ENROLLING Prostate cancer (castrate-resistant) HyperAcute Prostate: single agent, dose escalation ENROLLED Renal cancer (advanced) HyperAcute Renal; single agent, dose escalation ENROLLING Phase 2 Phase 3 ENROLLMENT COMPLETE 7 Algenpantucel-L Phase 2 Results in Resected Pancreatic Cancer Anti-CALR Ab Increased Ab No Increase Total Number Patients 31 33 64 OS (months) >35 19.2 P < 0.04 (log rank test) 30 month survival 55% 21% P <0.01 (Fisher’s exact test) Rossi, G.R. et al, ASCO 2014: Highlights Selected. Poster 3029 Anti-CALR Antibody Elevation Correlates with Improved Overall Survival 8 IMPRESS Trial Algenpantucel-L Phase 3 Registration Trial Randomized two-arm study of immunotherapy added to standard adjuvant treatment versus standard treatment alone 722 patients with surgically removed cancers enrolled in 70+ U.S. sites from May 2010 to September 2013 Protocol under SPA with FDA, also orphan drug and fast track status Statistical method employed is a log rank analysis powered at 80% to detect approximately a 20% difference in overall survival Algenpantucel-L given at high dose used in Phase 2 study (300 million cells) for a longer treatment period: every two weeks for six months, then monthly for an additional six months Stratified for nodal status, radiotherapy administration and CA19-9 The characteristics of the patients enrolled in the IMPRESS study are consistent with patient populations enrolled in previous U.S. multiinstitutional trials in pancreatic cancer 9 IMPRESS Trial Data Analyses The study was fully enrolled in September 2013 The second interim analysis showed an estimated median overall survival of 28.5 months* from the time of randomization for both cohorts blended together We estimate that overall survival in the control arm, even allowing for advances in the SOC, should be in the low twenties following surgery These initial data from the Phase 3 trial have given us confidence to proceed with commercialization plans *Kaplan Meier analysis based estimate 10 PILLAR: Second Phase 3 Trial Locally Advanced Pancreatic Cancer Launched October 2012 (FPI, Q113) Open label, two-arm, randomized study (n=280) FOLFIRINOX or nab-paclitaxel +/- algenpantucel-L Algenpantucel-L: 300 million cells Q2 weeks up to 18 doses Overall survival is the primary endpoint Includes borderline or locally advanced unresectable patients Enrollment expected to be completed in 2015 Positive results might more than double the treatable patient population 13 NewLink Genetics About Pancreatic Cancer Approximately 48,960 new cases of pancreatic cancer will occur in 2015 in the U.S.* Pancreatic cancer has the lowest survival rate of all cancers** – 1-year survival rate of all stages combined is 26% – 5-year survival rate of all stages combined is 6% Treatment options vary by stage, but primarily include – Surgical resection – Chemotherapy • Gemcitabine • Gemcitabine + nab-paclitaxel • FOLFIRINOX • Erlotinib An estimated 15,000 patients are eligible for resection and an additional 10,000 patients have locally advanced disease*** *American Cancer Society **National Cancer Institute ***SEER data 14 Commercialization Strategy Algenpantucel-L for Patients with Pancreatic Cancer NewLink Genetics plans to execute an independent U.S. commercial launch – Establishing experienced oncology commercial team – Leverage key pancreatic surgical centers as hubs – Provide strong product support across entire multidisciplinary team Key launch components currently being assembled – Utilizing state-of-the-art cold chain distribution – Conducting reimbursement analysis and establishing support services – Corporate and product branding initiatives underway Evaluating different options for ex-U.S. commercialization – Anticipate EMEA submission with IMPRESS results – Exploring potential partnerships with large global companies – Assessing options to develop ex-U.S capability 15 Indoleamine 2,3-Dioxygenase (IDO) Pathway A Key Immune Checkpoint Target Regulates Innate and Adaptive Immune Response Is counter-regulatory (induced by inflammation) Inhibits effector T cells, activates suppressive Tregs Can create peripheral tolerance de novo Dominant Regulatory Role Maternal tolerance; autoimmune disorders; transplant tolerance Tumor-induced immunosuppression Overexpressed in Cancer Within tumor cells to directly suppress T cells Within antigen-presenting cells resulting in peripheral tolerance to tumor-associated antigens IDO is central to immune escape 18 Leading Pipeline in Immuno-Oncology IDO Pathway Inhibitor Clinical Development Program IDO Pathway Inhibitor Platform AGENT Indoximod TARGET DISEASE DESIGN DETAILS Breast cancer (metastatic) Indoximod + taxane; randomized ENROLLING Prostate cancer (metastatic, castrate-resistant) Indoximod following sipuleucel-T; randomized ENROLLING Pancreatic cancer (metastatic) Indoximod + gemcitabine and nab-paclitaxel; phase 1b/2 ENROLLING Melanoma (advanced) Indoximod + ipilimumab or PD-1 inhibitors; phase 2 ENROLLING Glioblastoma multiforme Indoximod + temozolomide; phase 2 ENROLLING Solid tumors GDC-0919 Solid tumors GDC-0919 + PD-L1 inhibitor or anti-OX40 GDC-0919 Phase1 Phase 2 Phase 3 Partnered with Genentech, Inc. 19 Indoximod + Docetaxel Combination Phase 1b Efficacy Results 18% (4/22) partial response rate (2 breast, 1 lung, 1 thymic) 41% (9/22) rate of stable disease Fold Change in Tumor Volume 60% 40% 20% NSCLC Esophageal Laryngeal 0% Breast -20% Thymic type -40% Rectal -60% Pancreatic -80% Ovarian -100% Encouraging responses in heavily pre-treated patients 20 Indoximod Plus CTLA-4 Blockade 100 0.8 0.6 0.4 * ** 0.2 0.0 0 5 10 15 20 25 Days post tumor challenge untreated aCTLA4 Indoximod aCTLA4 + Indoximod 100 80 Survival (%) 1.0 Survival (%) Average tumor size (cm^3) Tumor Regression and Survival Improvement 80 60 60 40 * 40 20 * 20 0 00 0 10 10 20 20 30 30 40 40 50 50 60 60 Days challenge Dayspost post tumor tumor challenge untreatred untreatred aCTLA4 aCTLA4 Indoximod Indoximod aCTLA4 ++Indoximod aCTLA4 Indoximod Dual checkpoint blockade is more effective than single Holmgaard et al, JEM 2013 21 Phase 1b Trial of IDO (Indoleamine 2,3-Dioxygenase Pathway) Inhibitor Indoximod Plus Ipilimumab in Unresectable Stage 3/4 Melanoma Results: Favorable Safety profile with no dose-limiting toxicities were observed 9 patients enrolled: 3/9 (33%) were female Median age: 64 years (range: 45-83 years) Most adverse events (AEs) were grade 1/2 in severity Most common AEs: fatigue (7/9 pts., 78%) pruritus (6/9 pts., 67%), diarrhea and rash (4 pts. each, 44%), and abdominal pain and headache (3/9 pts. each, 33%;) Two Serious Adverse Events (SAEs) reported on study: One grade 3 diarrhea possibly related and one grade 3 atrial flutter unrelated Currently, 7 of 9 patients evaluable for response: Two responses (1 complete, 1 partial) reported based on RECSIST criteria Five patients had progressive disease & two patients awaiting follow up All patients still alive when reported and follow up for response continues Zakharia, Y et al, Abstract #514, ESMO/ECC Vienna, September 2015 22 Phase 1b Trial of IDO (Indoleamine 2,3-Dioxygenase Pathway) Inhibitor Indoximod Plus Ipilimumab in Unresectable Stage 3/4 Melanoma Conclusions: Combination was well tolerated No potentiation of autoimmune AEs Promising early clinical activity Phase 2 dose for indoximod has been established as the 1200-mg BID dose – Up to 96 patients currently being enrolled in the Phase 2 study Using a revised study design, standard of care immune checkpoint inhibition consisting of sequential ipilimumab and PD-1 inhibitor (nivolumab or pembrolizumab) administration will be given in combination with indoximod Primary endpoint of progression free survival Secondary endpoints of overall survival, safety and subgroup analysis Zakharia, Y et al, Abstract #514, ESMO/ECC Vienna, September 2015 23 Genentech Alliance on GDC-0919 IDO Inhibitor Validation of NewLink’s Approach Exclusive worldwide license agreement for NewLink Genetics IDO and TDO inhibitors except indoximod, including GDC-0919 $150 million upfront payment; >$1 billion in potential milestones Escalating double-digit royalties, with additional escalation if NewLink Genetics co-promotes in the United States Research collaboration agreement – Genentech funds FTEs at NewLink Genetics – Research focuses on discovery of novel TDO inhibitors, dual IDO/TDO inhibitors, and the use of GDC-0919 in combination with TDO inhibitors and/or other immune checkpoint inhibitors – Joint Research Committee oversees research activities Clinical development – Joint Development Committee oversees clinical development activities – Clinical plans to combine GDC-0919 with atezolizumab (MPDL3280A, anti-PDL1) and other checkpoint inhibitors 24 GDC-0919 Ongoing Clinical Trials Phase I study of GDC-0919 results presented in conjunction with Genentech at ESMO/ECC in September 2015 in Vienna A Phase Ib, open-label, dose-escalation study of the safety and pharmacology of GDC-0919 in combination with atezolizumab (MPDL3280A, Anti-PD-L1) in patients with advanced solid tumors opened to enrolment, July 2015 Preclinical poster presented at SITC: “Improved anti-‐tumor immunity and efficacy upon combination of the IDO1 inhibitor GDC-‐0919 with anti-‐PD‐L1 blockade versus anti-‐PD-‐L1 alone in preclinical tumor models” Additional combination study planned with anti-OX40 Combinations of GDC-0919 and other checkpoint inhibitors entering the clinic 25 Phase 1a Study of the Safety, Pharmacokinetics & Pharmacodynamics of GDC-0919 in Patients with Recurrent/Advanced Solid Tumors Safety: Well tolerated with 19 patients enrolled – All patients experienced at least one adverse event regardless of attribution – Grade ≥3 adverse events regardless of attribution reported in 11/19 (58%) of patients – No adverse events requiring withdrawal of study drug were reported MTD not reached Grade ≥3 AE related to GDC-0919 in 1 patient with Grade 4 lower GI hemorrhage Only one SAE reported as possibly related, Grade 4 lower GI hemorrhage SAEs reported in 8/19 (42%) of patients regardless of attribution included: – Grade 5 progression of neoplasm (3/19, 16%; <30 days of last GDC-0919 dose); 1 patient each with Grade 4 lower gastrointestinal hemorrhage, Grade 4 hypotension, Grade 3 pneumonia, Grade 3 mental status change and Grade 3 small intestinal obstruction, and Grade 2 hypoxia Nayak, A et al, Abstract #346, ESMO/ECC Vienna, September 2015 26 Phase 1a Study of the Safety, Pharmacokinetics & Pharmacodynamics of GDC-0919 in Patients with Recurrent/Advanced Solid Tumors Conclusions: Overall, well tolerated up to 800 mg BID on a 21/28 day cycle Best response was limited to stable disease (SD) in 7 of 17 patients Higher doses modulate plasma Kyn in a manner consistent with half-life of drug Single and multiple dose exposures from 50 to 800 mg increased in approximately dose-proportional manner Evaluation of the PK/PD relationship is ongoing to identify the dose that will achieve maximal inhibition of IDO No immune-related AEs evident, although a possible relationship between study treatment and elevation of liver enzymes cannot be ruled out at this time Study continues to evaluate safety, PK, activity, and PD at a continuous dosing schedule (BID 28/28 days) to enable greater flexibility in future dosing regimens Phase 1b combination of GDC-0919 with atezolizumab (PD-L1 inhibitor) ongoing Nayak, A et al, Abstract #346, ESMO/ECC Vienna, September 2015 27 Improved anti-tumor immunity & efficacy upon combination of the IDO1 inhibitor GDC- 0919 with α-PD-L1 blockade versus α-PD-L1 alone in preclinical studies GDC-0919 favorably alters tumor microenvironment GDC-0919 decreases blood and tumor kynurenine levels in the EMT6 model. Balb/c mice were injected with EMT6 cells followed by treatment with α-PD-L1 alone (10 mg/kg, 2x/week), GDC-0919 alone (200 mg/kg twice daily), or a combination of the two. At 2 hrs post-lastdose, blood and tumors were assessed for kyn/trp. Spahn, J et al, SITC Annual Meeting , November 2015 28 Improved anti-tumor immunity & efficacy upon combination of the IDO1 inhibitor GDC- 0919 with α-PD-L1 blockade versus α-PD-L1 alone in preclinical studies Summary and Conclusions: In the clinic, peripheral blood testing of Kyn levels showed transiently decreasing plasma Kyn beyond 95% CI, in a manner consistent with its PK profile; PK was approximately dose proportional with a t1/2 ~ 12 hrs (Nayak et al.) Preclinically, GDC-0919 decreased plasma and tumor Kyn levels in tumor-bearing mice in a dose-dependent manner A combination treatment of GDC-0919 with αPD-L1 in the EMT6 syngeneic model resulted in improved anti-tumor activity compared with αPD-L1 alone EMT6 treatment of GDC-0919 in combination with αPD-L1 led to increased CD8+/Treg ratio and increased serum levels of IFNγ consistent with a stronger adaptive anti-tumor immune response GDC-0919 induces activation of intratumoral CD11b+F4/80+ macrophages as well as CD11b+CD11c+ and CD103+CD11c+ DCs as single agent and in combination Phase 1b combination of GDC-0919 with atezolizumab (PD-L1 inhibitor) ongoing Spahn, J et al, SITC Annual Meeting , November 2015 29 Indoximod Plus CTLA-4 Blockade Plus Cellular Immunotherapy Survival (%) 100 80 untreated aCTLA4 aCTLA4 + Indoximod 60 40 * 20 0 Vaccine + Indoximod Gvax + Indoximod Vaccine + aCTLA4 Gvax + aCTLA4 Gvax + aCTLA4 +Indoximod Vaccine + aCTLA4 + Indoximod 0 20 40 60 80 Days post tumor challenge untreated Immune-refractory tumors can respond to cellular aCTLA4 immunotherapy + checkpoint blockade aCTLA4 + Indoximod Holmgaard et al, JEM 2013 30 Combination Immunotherapy Trials The Future of Immuno-Oncology Combination therapies will be necessary to build upon initial successes seen in immuno-oncology NLG0304 dorgenmeltucel-L (HyperAcute Melanoma) plus checkpoint inhibitors ipilimumab, nivolumab, or pembrolizumab NLG2103 indoximod in combination with checkpoint inhibitors for patients with advanced melanoma NLG0401 tergenpumatucel-L (HyperAcute Lung) plus indoximod for patients with advanced NSCLC Combination therapies of cancer vaccines and checkpoint inhibitors could significantly expand the effectiveness of immuno-oncology 31 Infectious Disease Program Ebola Vaccine Novel recombinant viral vector (vesicular stomatitis virus, rVSV) developed by the Public Health Agency of Canada 100% protective after one dose in lethal monkey challenge model 100% of human subjects develop strong immune response after just one dose Manufactured multiple GMP lots meeting global requirements Program being supported by Merck in an agreement signed in November 2014 - $50 million of milestones through July 2015 NewLink Genetics has established an experienced infectious disease clinical development team Found to have 100% efficacy in an analysis of interim data from a Phase 3 ring vaccination trial in Guinea published in The Lancet (July 31, 2015) 32 Financial Position (as of September 30, 2015) Cash and equivalents $200.4 million Debt ~$1.0 million YE 2015 Cash Guidance >$160 million Shares Outstanding 28.8 million Market Capitalization ~$1.1 billion* Well-funded to develop many opportunities *As of November 1, 2015 33 NewLink Genetics Near-Term Catalysts, 2015 - 2017 Algenpantucel-L: results of IMPRESS in 2016, validation of HyperAcute Cellular Immunotherapy platform and commercial pathway Partnership clinical advancements with Genentech/Roche (GDC-0919 clinical milestones) Validation of IDO pathway inhibitor program (indoximod) across multiple cancer studies New combination trials with multiple checkpoint inhibitors and HyperAcute Cellular Immunotherapy Potential for significant catalysts in next 24 months 34