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Bacterial Chemoautotrophy in Coastal Sediments
D. Vasquez Cardenas
Dissertation title: Bacterial Chemoautotrophy in Coastal Sediments
Author: Diana Vasquez Cardenas
Abstract
A key process in the biogeochemistry of coastal sediments is the reoxidation of reduced
intermediates formed during anaerobic mineralization which in part is performed by
chemoautotrophic bacteria. These bacteria fix inorganic carbon using the energy derived from
reoxidation reactions. However the importance and distribution of chemoautotrophy has not been
systematically investigated in coastal environments. To address these issues, diverse coastal sediments
were surveyed by means of bacterial biomarker analysis (phospholipid derived fatty acids) combined with
stable isotope probing (13C-bicarbonate). Sediment chemoautotrophy rates from this study and from
literature (0.07 to 36 mmol C m-2 d-1) showed a power-law relation with benthic oxygen uptake. Benthic
oxygen uptake serves as a proxy for carbon mineralization as such the ratio of the CO2 fixed by
chemoautotrophy over the total CO2 released through mineralization can be estimated for sediments from
the continental shelf (3%), nearshore (9%) and salt marsh (21%). Therefore chemoautotrophy plays an
important role in C-cycling in reactive intertidal sediments (e.g. salt marsh) rather than in the organicpoor, permeable shelf sediments. Moreover, five coastal sediment regimes were linked to the depthdistribution of chemoautotrophy: 1) permeable sediments dominated by advective porewater transport, 2)
bioturbated sediments, and cohesive sediments dominated by diffusive porewater transport characterized
by either 3) canonical sulfur oxidation, 4) nitrate-storing Beggiatoa, or 5) electrogenic sulfur oxidation.
The depth-distribution of chemoautotrophy hence varies due to biogeochemical characteristics such as
grain size, organic carbon content, presence of filamentous sulfur oxidizing bacteria, and macrofaunal
activity in coastal environments.