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Phytochrome signalling modulates the SAperceptive pathway in Arabidopsis Cytosol Chloroplast Photosynthetic light reaction Calvin cycle Starch synthesis Protein synthesis Photorespiration Amino acid biosynthesis Chlorophyll and/or heme biosynthesis Nitrogen assimilation Sulfur assimilation Protein synthesis Sucrose synthesis Glycolysis Ubiquitin-proteasome pathway Brassinosteroid biosynthesis Golgi appatatus Plasma membrane Cell wall synthesis Nucleus Transcription factors Transcription factors Peroxisome photorespiration Endoplasmic reticulum Cell wall synthesis Microsome Phenylpropanoid pathways Mitochondrion Glyoxysome TCA cycle Photorespiration Brassinosteroid biosynthesis Glyoxidate cycle Fatty acid oxidation Vacuole Water transport Ethylene synthesis Hypocotyl elongation Blue light CRY1 Far-red light phyA Red light phyB COP1 COP1 Systemic Acquired resistance Hypersensitive response Methyl salicylate SA Infection SA SA b-glucoside SA b-glucoside Methyl salicylate The salicylic acid (SA) pathway The salicylic acid (SA) pathway is an important route inserted in the network of defense signalling. The synthesis of PR proteins can be activated by an ectopic treatment with SA or functional analogues such as BTH (benzo(1,2,3)thiadiazole7-carbothioic acid S-methyl ester). In transgenic Arabidopsis plants expressing a SA-hydroxylase gene of Pseudomonas putida (NahG gene), SA is degraded to catechol leading to a loss of PR1 gene expression, and a higher susceptibility to virulent pathogens. Interaction of Phytochrome Signalling with The SA Signal Transduction Pathway SA LTD (light to defense) PR1 PR5 Phytochrome A Chloroplast Phytochrome B PSI2 Unknown signal HR Structures of SAR-inducing compounds 2,6-dichloroisonicotinic acid Benzo(1,2,3)thiadiazole-7carbothioic acid S-methy ester Figure 1. The SA and BTH induction of PR1 and chlorophyll is light dependent Figure 2. The modulation of defense by light is phytochrome-dependent. Table S1 Effect of red light on the induction of CAB and ChS expression. Five-day-old seedlings grown in darkness were treated with SA or BTH alone, or in conjunction with a pulse of 5 min red light (25 mmol m-2 s-1). Each value represents the average response of two sets of 150 seedlings Cab2-W-luc expression ChS-W-luc expression (counts per seedling/15min) (counts per seedling/15min) No treatment 6.2 2.8 5' red light 122.0 72.3 SA (250 mM) 6.7 3.0 BTH (1 mM) 7.2 3.7 SA (250 mM) + 5' red light 119.7 68.0 BTH (1 mM) + 5' red light 103.6 61.1 (A) H2O+O2 H2 O2 Ferric enzyme Compound I H2 O2 H2 O (B) Ferric enzyme SA• (+H2O) Compound I H2 O2 SA Compound II H2 O SA• SA Potential targets in mammalian cells include: • Postaglandin H synthetase • Lactoperoxidase • Myeloperoxidase • Catalase • Aconitase • Methemoglobin • Metmyoglobin Potential targets in plants include: • Hydroperoxide dehydrase • Ascorbate peroxidase • Horseradish peroxidase • Catalase • Aconitase • Leghemoglobin • Aminocyclopropane carboxylic acid(ACC) oxidase Figure 3. SA content is not correlated to phytochrome activity. Figure S1 The light modulated expression of PR1 in SA-treated plants is independent of protein synthesis. Three-week-old WT plants were pretreated with cycloheximide, injected with 250 mM SA, and exposed to high light fluences for 30 min. Table 1. Effect of light perception on the expression of PR genes and the growth of an avirulent pathogen (Pseudomonas syringae pv. tomato DC3000 carrying avrRpt2) Dark (0.1 µmol m-2 sec-1) Plants: Wt phyA-phyB psi2 phyA-phyB-psi2 NahG NahG-psi2 aPlants Light (25 µmol m-2 sec-1) Bacterial titrea (± SD) PR1 expressionb (± SD) Bacterial titrea (± SD) 7.4 (0.5) 7.7 (0.4) 7.3 (0.7) 7.7 (0.6) 7.5 (0.5) 7.6 (0.8) 2.1 (0.8) 0.8 (0.7) 2.3 (0.9) 1.3 (0.7) 0.5 (0.3) 0.4 (0.2) 5.3 (0.8) 7.8 (0.6) 4.1 (0.4) 7.7 (0.4) 7.9 (0.5) 7.8 (0.5) PR1 expressionb (± SD) 16.3 (2.1) 3.2 (0.6) 35.8 (4.2) 3.6 (0.5) 2.8 (0.4) 4.0 (0.5) were injected with a solution of 0.5 X10 3 bacteria cm 2 and the number of colony forming units were measured 3 days after injection; data are expressed in Log cfu cm 2. bRelative abundance. 3681 mutant containing green and white areas Single mutant 3681-variegated Double mutant 3681-variegated psi2 Triple mutant 3681-variegated phyA-phyB Double mutant 3681-variegated psi2 containing the NahG transgene Figure 4. Influence of chloroplasts on the phytochrome-modulated defense responses. Figure 5. Schematic representation of the modulation of defense by phytochrome using intuitive (a) and Boolean formalism (b). Figure S2 The expression of a defensin gene is not upregulated by light: Expression of PDF1.2 under increasing light intensity.