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GLEN ALAN SATTEN EDUCATION 2251 Abby Lane Atlanta, Ga 30345 (404) 929-9786 (h) (770) 488-6296 (w) [email protected] Ph.D. (1985) Chemical Physics, Harvard University. Thesis title: Applications of Stochastic Differential Equations in Chemical Physics. M.A. (1981) Physics, Harvard University. B.A. (1979) Geology, Oberlin College. PROFESSIONAL HISTORY Senior Biomedical Research Service, Centers for Disease Control and Prevention (1997 – present). Senior Scientist, Maternal and Infant Health Branch, Division of Reproductive Health, Centers for Disease Control and Prevention, Atlanta Georgia (January 2006 – Present) Mathematical Statistician, Molecular Biology Branch, Division Laboratory Sciences, National Center for Environmental Health, Centers for Disease Control and Prevention, Atlanta, Georgia (January 2001 – January 2006). Mathematical Statistician, Division of HIV/AIDS Prevention: Surveillance and Epidemiology, National Center for HIV, STD and TB Prevention, Centers for Disease Control and Prevention, Atlanta, Georgia (September 1990 – December 2000). Adjunct Professor, Department of Human Genetics, School of Medicine, Emory University (2007 – present) Adjunct Professor, Division of Biostatistics, School of Public Health Emory University (August 2002 – present) Adjunct Associate Professor, Division of Biostatistics, School of Public Health, Emory University (August 1994 – August 2002). Adjunct Assistant Professor, Division of Biostatistics, School of Public Health, Emory University (February 1991 – July 1994). National Institute of Environmental Health Sciences post-doctoral trainee, Department of Biostatistics, School of Public Health, University of North Carolina at Chapel Hill (June 1988 – August 1990). Mathematics and Statistics Teacher/Peace Corps Volunteer, Kenya, East Africa (1985 – 87). PROFESSIONAL EXPERIENCE Oral presentation, International Genetic Epidemiology Society meeting “Testing Association without Calling Genotypes Allows for Systematic Differences in Read Depth and Sequencing Error Rate between Cases and Controls,” Chicago IL (2013) Oral presentation, American Statistical Association Meeting “Controlling Confounding in (Genetic) Case-Control Studies using the Stratification Score,” Vancouver BC, Canada (2010) Invited speaker, Southern Regional Council on Statistics Summer Research Conference “Robust regression analysis of copy number variation data,” Jekyll Island, GA (2009) Oral presentation, American Society of Human Genetics Meeting “New haplotype sharing method for genome-wide case-control association studies implicates gene for Parkinson’s disease,” Philadelphia PA (2008) Oral presentation, International Genetic Epidemiology Society Meeting “New haplotype sharing method for genome-wide case-control association studies implicates gene for Parkinson’s disease,” St. Louis MO (2008) Invited speaker, DIMACS Workshop on Computational Issues in Genetic Epidemiology, “New haplotype sharing method for genome-wide case-control association studies implicates gene for Parkinson’s disease,” New Brunswick NJ (2008) Invited speaker, Conference on Haplotype Analysis of Population and Pedigree Data in Association Studies, “Haplotype sharing for genome-wide case-control association studies,” Birmingham AL (2008) Invited speaker, Royal Statistical Society Genetic Association Studies and Public Health Conference, “Model selection for stratification scores,” York England (2007) Oral presentation, International Genetic Epidemiology Society Meeting, “Simple methods for high-density copy number variation data,” York, England (2007) Invited speaker, workshop on Application of Haplotype Sharing Methods in Gene Mapping of Complex Diseases, “Novel Haplotype Sharing Statistics for Case-Parent Trio Data,” German Cancer Research Center (DKFZ), Heidelberg, Germany (2006) Invited speaker, Minisymposium: Statistical analysis for mass spectrometric proteomics, “Standardization and Denoising Algorithms for Mass Spectra to Classify Whole-Organism Bacterial Specimens,” Leiden University Medical Center, Leiden, the Netherlands (2006) Oral presentation, European Mathematical Genetics Meeting, “Simple Correction for Population Stratification in Case-Control Studies Using a Novel Confounder Score,” Cardiff, Wales (2006) Invited speaker, Statistical Analysis of Complex Event History Data, “The fractional risk set approach to multistage data,” Centre for Advance Study, Norwegian Academy of Science and Letters, Oslo, Norway (2005) Invited speaker, International Biometric Society Eastern North American Region Conference “The fractional risk set approach to multistage data,” Austin, TX (2005) Invited speaker, Minisymposium on Association Analysis of Candidate Genes: From Single Point to Multipoint Methods. Leiden University Medical Center, Leiden, the Netherlands (2005) Oral presentation, International Genetic Epidemiology Society “Semiparametric estimation of haplotype-disease association with unphased genotype data in family-based studies,” Nordwijkerhout, the Netherlands (2004) Invited speaker, Joint Statistical Meetings “Estimating haplotype effects in family-based association studies,” Toronto, Canada (2004) Invited Speaker, International Conference on Analysis of Genomic Data “Inference on haplotype effects in case-control studies using unphased genotype data,” Boston MA (2004) Oral Presentation, Piedmont Genetic Epidemiology Society “Inference on Haplotype effects in Case-Control Studies Using Unphased Genotype Data,” Durham NC (2003) Member, American Cancer Society Biologic Specimen Advisory Group (2002-present) Invited speaker, Joint Statistical Meetings, “Informative missingness in statistical genetics,” New York (2002). Invited speaker, Nordic Network for Biostatistics Workshop on New Developments in Event History Analysis, “Marginal analyses of multistage models,” Oslo Norway (2001). Invited speaker, IMS Fifth North American Meeting of New Researchers in Statistics and Probability, “How I became rich and famous through statistics (an inspirational yet technical talk),” Atlanta GA (2001). Invited speaker, International Biometric Society ENAR meeting, “Marginal estimation for multistage models,” Chicago IL (2000). Invited speaker, NIAID Statistical Methodology Satellite Symposium, “Models with dependent censoring,” Bethesda, MD (2000). Invited speaker, Oberlin College “The biomathematics of detecting early HIV infection” (1999). Invited speaker, International Biometric Society ENAR meeting “Estimating the extent of tracking in interval censored chain-of-events data,” Atlanta, GA (1999). Invited speaker, SIMS conference on Quantitative Evaluation of HIV Prevention Programs, “Identification of persons with recent HIV infection, with application to estimating HIV incidence among U.S. blood donors,” Domaine de Divone, France (1998). Invited presentation “A mathematical model for the effect of a hold period on the number of potentially infectious units made by qualified plasma donors,” Blood Products Advisory Committee meeting, Food and Drug Administration, Bethesda, MD (1998). Invited speaker, Indian Statistical Institute and Bernoulli Society for Mathematical Statistics and Probability joint conference on Recent Advances in Statistics and Probability, “Staged models of early HIV infection, with application to estimation of HIV incidence,” Calcutta, India (1997). Discussant, AIDS in the 1990s, XVIIIth International Biometrics Conference, Amsterdam, The Netherlands (1996). Invited speaker and consultant, Amsterdam Municipal Health Service, “Analysis of the window periods between detectability of viral and serologic markers of HIV infection,” Amsterdam, The Netherlands (1996). Invited speaker, Workshop on Statistical Modeling and Inference for the Prediction of the AIDS Epidemic, Instituto per le Applicazioni del Calcolo Mauro Picone, “Analyzing interval censored data from AIDS studies,” Rome, Italy (1996). Invited speaker, Royal Statistical Society ordinary meeting, “Markov chains with measurement error: Estimating the ‘true’ course of a marker of the progression of human immunodeficiency virus disease,” London, UK (1995). Invited speaker, American Statistical Association Joint Statistical Meetings, “The proportional hazards model for interval censored data,” Orlando, Florida (1995). Invited speaker, INFORMS Applied Probability Conference, “Hidden Markov models for Markov chains observed with error,” Atlanta, Georgia (1995). Invited speaker, American Statistical Association Joint Statistical Meetings, “Hidden Markov models for Markov chains observed with error,” Toronto, Canada (1994). Invited speaker, XVIIth International Biometric Conference, “Models for markers of disease progression and their use in estimating recent HIV infection,” Hamilton, Canada (1994). Oral presentation, First National Conference on Human Retroviruses and Related Infections, “High per-act probability of female-to-male HIV-1 transmission in an emerging epidemic,” Washington, D. C. (1993). Invited speaker and consultant, Amsterdam Municipal Health Service, “The use of immunologic and virologic markers in the prediction of HIV disease using staged Markov models,” Amsterdam, The Netherlands (1993). Invited speaker, 1993 SIMS conference on Quantitative Methods for Studying AIDS, “Models for markers of disease progression and their use in estimating recent HIV incidence,” Blaubeuren, Germany (1993). Invited speaker, Human Diseases Workshop, Isaac Newton Institute for Mathematical Sciences, Cambridge University, “Continuous-time Markov chains with measurement error: estimating the ‘true’ course of a marker of HIV disease progression,” Cambridge, UK (1993). Participant, Multi-cohort Analysis Project, Biostatistics Unit, Medical Research Council, Cambridge, UK (1993). Discussant of “Modeling the HIV Epidemic”, VIII International Conference on AIDS/III STD World Conference, Amsterdam, the Netherlands (1992). Invited speaker, IVth E. C. Workshop on Quantitative Analyses of AIDS Modeling, Impact Assessment, Forecasting and Scenario-analysis, “Estimating the incidence of HIV infection using cross-sectional marker surveys,” Bilthoven, the Netherlands (1992). Invited speaker, Oberlin College, “How does the CDC know how many people are infected with HIV?” Oberlin Ohio (1992). Invited speaker, American Statistical Association Joint Statistical Meetings, “Estimating the incidence of new HIV infections from cross-sectional prevalence surveys,” Atlanta, Georgia (1991). Invited speaker, American Public Health Association, “Analyzing trends in HIV seroprevalence surveys,” Atlanta, Georgia (1991). Invited speaker, American Statistical Association Joint Statistical Meetings, “Conditional regression analysis of the odds ratio between two binary variables when one is not measured with certainty,” Anaheim, California (1990). DEPARTMENTAL SEMINARS Division of Biostatistics, Rollins School of Public Health, Emory University (1991,1992, 1993, 1995, 1998, 1999, 2004, 2013) Department of Biostatistics, School of Public Health, University of North Carolina, Chapel Hill (1993, 1998, 2000, 2005) School of Industrial and Systems Engineering, Georgia Institute of Technology (1994) Department of Biostatistics, University of California at Berkeley (1994) Department of Statistics, University of Georgia (1994, 1995, 1998, 2005) Department of Statistical Science, University College, London, UK (1995) Medical Research Council Biostatistics Unit, Cambridge, UK (1995) Department of Statistics, Columbia University (1995) Department of Biostatistics, Columbia University (2010) Department of Biostatistics, School of Public Health, University of California at Los Angeles (1995) Department of Biostatistics, School of Hygiene and Public Health, Johns Hopkins University (1995) Department of Biostatistics, University of Washington (1999) Department of Statistics and Actuarial Science, Waterloo University, Canada (1999) Department of Biostatistics, Harvard University (2000) Section for Medical Statistics, Oslo University School of Medicine (2001) Department of Statistics, Operations Research and Actuarial Science, Stern School of Business, New York University (2002) National Institute of Environmental Health Sciences (2002) Division of Biostatistics, University of California San Francisco (2003) Center for Statistical Sciences, Brown University (2003) Department of Biostatistics (Statistical Genetics Section), University of Alabama Birmingham (2003) Memorial Sloan Kettering Cancer Center (2004) National Cancer Institute (2004) Department of Human Genetics, Emory University School of Medicine (2008) National Institute of Allergy and Infectious Diseases (2010) Center for Genomics and Molecular Medicine, University of Louisville (2010) Division of Biostatistics, Dept. of Preventive Medicine, University of Southern California (2010) University of Pittsburgh, Dept. of Biostatistics (2011) University of Wisconsin, Madison Dept. of Biostatistics (2012) TEACHING EXPERIENCE Introduction to Statistics in Human Genetics, Department of Biostatistics, Rollins School of Public Health, Emory University (BIOS 598R). (Fall semester, 2001) Association Studies in Genetic Epidemiology, Department of Biostatistics, Rollins School of Public Health, Emory University (BIOS 760R). (Spring semester 2003) Statistics in Human Genetics, Department of Biostatistics, Rollins School of Public Health, Emory University (BIOS 598R). (Spring semester, 2008) GRADUATE STUDENTS SUPERVISED Graduate co-advisor for Emory University Ph.D. candidate Lydia Coulter Kwee (Division of Biostatistics, Rollins School of Public Health) Graduate co-advisor for Emory University Ph.D. candidate Michael Hudgens (Division of Biostatistics, Rollins School of Public Health) Graduate co-advisor for Emory University Ph.D. candidate Maya Sternberg (Division of Biostatistics, Rollins School of Public Health). Graduate advisor for Emory University M.P.H. candidate Lyle Petersen, M. D. (Division of Epidemiology, Rollins School of Public Health). SERVICE TO STATISTICAL COMMUNITY Associate Editor, Lifetime Data Analysis (1999 - present) Associate Editor, American Journal of Epidemiology (1998 - present) Associate Editor, Biometrics (1997 - 2005) President, American Statistical Association Atlanta Chapter (1994 - 2005). Member, 1999 ENAR meeting program committee, International Biometric Society Member, 2000 ENAR meeting program committee, International Biometric Society Chair, Statistics in Epidemiology Section, American Statistical Association (1999) Biometrics Section representative to Council of Sections, American Statistical Association (1996 - 1998). Member, Outstanding Statistical Application Award committee, American Statistical Association (1995 - 1998, 2000). Member, Mortimer Spiegelman Award committee, American Public Health Association (2000) Member, Nathan Mantel Award for Outstanding Achievement in Statistics in Epidemiolgy (2002) Member, Search Committee for Chair/Endowed Professor, Emory University Department of Biostatistics (2002-2003) HONORS Fellow, American Statistical Association (elected 2003) National Science Foundation Graduate Fellow (1979 - 82) Phi Beta Kappa (1978) AWARDS Best theoretical statistics paper by a CDC author published in 2010, “Inverse Probability of Censoring Weighted U-statistics for Right-Censored Data with an Application to Testing Hypotheses.” Best applied statistics paper by a CDC author published in 2009, “A Novel Haplotype Sharing Approach for Genome-Wide Case-Control Association Studies Implicates the Calpastatin Gene in Parkinson's Disease.” Best theoretical statistics paper by a CDC author published in 2005, “Locally-efficient robust estimation of haplotype-disease association in family-based studies.” Best applied statistics paper by a CDC author published in 2004, “Standardization and Denoising Algorithms for Mass Spectra to Classify Whole-Organism Bacterial Specimens.” Best theoretical statistics paper by a CDC author published in 2004, “How Special is a “Special” Interval: Modeling Departure from Length-Biased Sampling in Renewal Processes.” Best theoretical statistics paper by a CDC author published in 2003, “Marginal analyses of clustered data when cluster size is informative.” CDC and ATSDR Honor Award for Statistical Research and Services “For outstanding accomplishments in addressing methodologic and theoretical issues in biostatistics and statistics applied to epidemiology.” 2002 Best applied statistics paper by a CDC author published in 2001, “Analysis of dynamic cohort data.” Best theoretical statistics paper by a CDC author published in 2000, “The S-U algorithm for missing data problems.” Department of Health and Human Services Secretary’s Award for Distinguished Service (Early HIV Infection Detection Team), May 2000 Best theoretical statistics paper by a CDC author published in 1999, “Fitting semi-Markov models to interval-censored data with unknown initiation times.” Outstanding Statistical Application Award, American Statistical Association (1999) for “New testing strategy to detect early HIV-1 infection for use in incidence estimates and for clinical and prevention purposes.” Charles C. Shepard award for scientific excellence demonstrated by the publication of “New testing strategy to detect early HIV-1 infection for use in incidence estimates and for clinical and prevention purposes.” (The Shepard award is for best paper published by a CDC author) Best theoretical statistics paper by a CDC author published in 1998, “Inference based on imputed failure times for the proportional hazards model with interval-censored data.” Best applied statistics paper by a CDC author published in 1996, “Markov chains with measurement error: estimating the ‘true’ course of a marker of the progression of human immunodeficiency virus disease.” Best theoretical statistics paper by a CDC author published in 1996, “Rank-based inference in the proportional hazards model for interval censored data.” Best applied statistics paper by a CDC author published in 1994, “Duration of time from onset of human immunodeficiency type 1 virus infectiousness to development of detectable antibody.” Best theoretical statistics paper by a CDC author published in 1994, “Estimation of incidence of HIV infection using cross-sectional marker surveys.” PUBLICATIONS 113. Satten, G. A., Allen, A. S., Ikeda, M., Mulle, J. G., Warren, S. T. (2014). Robust Regression Analysis of Copy Number Variation Data Based on a Univariate Score. To appear in Plos One. 112. Satten, G. A., Biswas, S., Papachristou, C., Turkmen, A. and . König, I. R. (2014). Population-based association and gene by environment interactions in the Genetic Analysis Workshop 18. To appear in Genetic Epidemiology 111. Williamson, D. M., Marrie, R. A., Ashley-Koch, A., Satten, G. A. (2013). Interaction of HLA-DRB1*1501 and TNF-alpha in a population-based case-control study of multiple sclerosis. Immunology and Infectious Diseases 1(1):10-17 110. Epstein, M. P., Duncan, R., Jiang, Y., Conneelly, K. N., Allen, A. S. and Satten, G. A. (2012). A Novel Permutation Procedure to Correct for Confounders in Case-Control Studies, Including Tests of Rare Variation. The American Journal of Human Genetics 91(2):215-223 109. Satten, G. A., and Datta S. (2012). Minimum Distance Estimation of Transformation Parameters. Journal of The Indian Statistical Association (Golden Jubilee Issue) 50:219‐239 108. Alisch, R. S., Barwick, B. G., Chopra, P., Myrick, L. K., Satten, G. A., Conneely, K. N., Warren, S. T. (2012). Age-associated DNA Methylation in Pediatric Populations. Genome Research 22(4):623-32 107. Epstein, M. P., Duncan, R., Broadaway, K. A., He, M., Allen, A. S., Satten, G. A. (2012). Stratification Score Matching Improves Correction for Confounding by Population Stratification in Case-Control Association Studies. Genetic Epidemiology 36(3):195-205 106. Kharrazi M., Pearl M., Yang J., DeLorenze G. N., Bean C. J., Callaghan W. M., Grant A., Lackritz E., Romero R., Satten G., Simhan H., Torres A. R., Westover J. B., Yolken R., and Williamson D.M. (2012) California Very Preterm Birth Study: Design and characteristics of a population- and biospecimen bank-based nested case-control study. Paediatric and Perinatal Epidemiology 26:250-263 105. England L. J., Kim, S. Y., Shapiro-Mendoza, C. K., Wilson, H. G., Kendrick, J. S., Satten, G. A., Lewis, C., Whittern, P., Tucker, M. J., Callaghan, W. M. (2012). Maternal smokeless tobacco use in Alaska Native women and singleton infant birth size. Acta Obstetricia et Gynecologica Scandinavica 91(1):93-103 104. Xing, C., Satten, G. A., Allen A. S. (2011). A Weighted Accumulation Test for Associating Rare Genetic Variation with Quantitative Phenotypes. BMC Proceedings 5(suppl 9):S6 103. Allen A. S., Satten, G. A. (2011) Control for Confounding in Case-Control Studies using the Stratification Score, a Retrospective Balancing Score. Am J Epidemiol 173:752-760 102. Mulle J. G., Dodd, A. F., McGrath, J. A., Wolyniec, P. S., Mitchell, A. A., Shetty, A. C., Sobreira, N. L., Valle, D., Rudd, M. K., Satten, G., Cutler, D. J., Pulver, A. E., Warren, S. T. (2010). Microdeletions in 3q29 Confer High Risk of Schizophrenia. Am J Hum Genet 87:229-236 101. Satten, G. A., Allen, A. S., Bray, S. L., Dudbridge, F., Epstein, M. P. (2010). Fast and Robust Tests for Untyped SNPs in Case-Control Studies. Human Heredity 70:167-176 100. Datta, S., Bandyopadhyay, D., Satten, G. A. (2010). Inverse probability of censoring Weighted U-Statistics for Right Censored Data with an Application to Testing Hypotheses. Scan J Statistics 37:680-700 99. Abe, K., Shapiro-Mendoza, C. K, Hall, L. R., Satten, G. A. (2010). Late Preterm Birth and the Risk of Developing Asthma. J Pediatrics 157:74-78 98. Allen A. S. and Satten G. A. (2010). SNPs in CAST are associated with Parkinson disease: A confirmation study. American Journal of Medical Genetics Part B 153B:973-979 97. Allen A. S., Epstein M. P. and Satten G. A. (2010). Score-based Adjustment for Confounding by Population Stratification in Genetic Association Studies. Genetic Epidemiology 34:383-385 96. Kim S. Y., England, L., Wilson, H. G., Bish, C., Satten, G. A., Dietz, P. (2010) Fraction of Gestational Diabetes Mellitus Attributable to Overweight and Obesity. American Journal of Public Health 100:1047-1052 95. Liu Y., Li Y.-J., Satten, G. A., Allen, A. S., Tzeng J.-Y. (2009) A regression-based association test for case-control studies that uses inferred ancestral haplotype similarity. Annals of Human Genetics 73: 520-526 94. Allen, A. S. and Satten, G. A. (2009). Genome-Wide Association Analysis of Rheumatoid Arthritis Data Via Haplotype Sharing. BMC Proceedings 3(Suppl 7):S30 93. Sarasua, S., Collins, J. S., Williamson, D. M., Satten, G. A., Allen, A. S. (2009). Effect of Population Stratification on the Identification of Significant SNPs in Genome Wide Association Studies. BMC Proceedings 3(Suppl 7):S13 92. Allen, A. S. and Satten, G. A. (2009). A Novel Haplotype Sharing Approach for GenomeWide Case-Control Association Studies Implicates the Calpastatin Gene in Parkinson's Disease. Genetic Epidemiology 33:657-667 91. Moura, H., Woolfitt, A. R., Carvalho, M. G., Pavlopoulos, A., Teixeira, L. M., Satten, G A., and Barr, J. R. (2008). MALDI-TOFF Mass Spectrometry as a Tool for Differentiation of Invasive and Non-Invasive Streptococcus Pyogenes Ioslates. FEMS Immunology and Medical Microbiology 53:333-342 90. Epstein, M. P., Allen, A. S. and Satten G. A. (2008) Response to Lee et al. American Journal of Human Genetics 82:526-8 89. Datta, S. and Satten G. A. (2008). A Signed-Rank Test for Clustered Data. Biometrics 64:501-7 88. Allen, A. S. and Satten G. A. (2008). Robust Estimation and Testing of Haplotype Effects in Case-Control Studies. Genetic Epidemiology 32:29-40 87. Allen, A. S. and Satten G. A. (2007). Association mapping via a class of haplotype sharing statistics. BMC Proceedings 1(Suppl 1):S123 86. Epstein, M. P., Allen A. S. and Satten G. A. (2007). A Simple and Improved Correction for Population Stratification in Case-Control Studies. American Journal of Human Genetics 80: 921-930 85. Allen, A. S. and Satten G. A. (2007). Statistical Models for Haplotype Sharing in CaseParent Trio Data. Human Heredity 64: 35-44 84. Allen, A. S. and Satten, G. A. (2007). Inference on haplotype/disease association using parent-affected-child data: the projection conditional on parental haplotypes method. Genetic Epidemiology 31: 211-223 83. Kwee L. C., Epstein, M.P., Manatunga, A.K., Duncan, R., Allen, A.S. and Satten, G. A. (2007). Simple Methods for Assessing Haplotype-Environment Interactions in Case-Only and Case-Control Studies. Genetic Epidemiology 31:75-90 82. Steinberg, K. K., Relling, M. V., Gallagher, M. L., Greene, C. N., Rubin, C. S., French, D., Holmes, A. K., Carroll, W. L., Sampson, E. J. and Satten, G. A. (2007). Genetic studies of a cluster of acute lymphoblastic leukemia in Churchill County, Nevada. Environmental Health Perspectives 115:158-164 81. Rubin, C. S., Holmes, A. K., Belson, M., G., Jones, R. L., Flanders, W. D., Kieszak, S. M., Osterloh, J., Luber, G. E., Blount, B. C., Barr, D. B., Steinberg, K. K., Satten, G. A., McGeehin, M. A. and Todd, R. L. (2007). Investigating childhood leukemia in Churchill County, Nevada. Environmental Health Perspectives 115:151-157 80. Epstein, M. P., Waldman, I. D., and Satten, G. S. (2006). Improved association analyses of disease subtypes in case-parent triads. Genetic Epidemiology 30:209-219 79. Allen, A. S. and Satten, G. A. (2005). Robust testing of haplotype/disease association. BMC Genetics 6(Suppl 1):S69 78. Bailey-Wilson, J. E., Almasy, L., de Andrade, M., Bailey, J., Bickeböllers, H., Cordell, H. J., Daw, W., Goldin, L., Goode, E. L., Gray-McGuire, C., Hening, W., Jarvik, G., Maher, B. S., Mendell, N., Paterson, A. D., Rice, J., Satten, G., Suarez, B., Vieland, V., Wilcox, M., Zhang, H., Ziegler, A., and MacCluer, J. W. (2005) Genetic Analysis Workshop 14: microsatellite and single-nucleotide polymorphism marker loci for genome-wide scans. BMC Genetics 6(Suppl 1):S1 77. Allen, A. S., Satten, G. A. and Tsiatis, A. A. (2005). Locally-efficient robust estimation of haplotype-disease association in family-based studies. Biometrika 92:559-571 76. Datta, S., Satten, G. A. (2005). Rank sum tests for clustered data. Journal of the American Statistical Association 100:908-915 75. Epstein, M. P., Veal, C. D., Trembath, R. C., Barker, J. N. W. N., Li, C. and Satten, G. A. (2005). Genetic association analysis using data from nuclear families and unrelated subjects. American Journal of Human Genetics 76: 592-608 74. Satten, G. A., Datta, S., Moura, H., Woolfitt, A. R., Carvalho, M. da G., Carlone, G. M., De, B. K., Pavlopoulos, A., Barr, J. R. (2004). Standardization and Denoising Algorithms for Mass Spectra to Classify Whole-Organism Bacterial Specimens. Bioinformatics 20:31283136 73. Satten, G. A., Epstein, M. P. (2004). Comparison of Prospective and Retrospective Methods for Haplotype Inference in Case-Control Studies. Genetic Epidemiology 27:192-201 72. Datta S, Satten, G. A., Benos, D. J., Xia, J, Heslin, M. J., Datta, S. (2004). An Empirical Bayes Adjustment to Increase the True Discovery Rate of Detecting Differentially Expressed Genes in Microarray Experiments. Bioinformatics 20:235-242 71. Satten, G. A., Kong, F., Wright, D. J., Glynn, S. A., Schreiber, G. B. (2004). How Special is a “Special” Interval: Modeling Departure from Length-Biased Sampling in Renewal Processes. Biostatistics 5:145-151 70. Allen, A. S., Collins, J. S., Rathouz, P. J., Selander, C. L., Satten, G. A. (2003). Bootstrap Calibration of TRANSMIT for Informative Missingness of Parental Genotype Data. BMC Genetics 4(Suppl 1):S39 69. Li, Y., Ryan, L., Bellamy, S., Satten, G. A. (2003). Inference on clustered survival data using imputed frailties. Journal of Computational and Graphical Statistics 12:640-662 68. Correa-Villaseñor, A., Satten, G.A., Rolka, H. Langlois P., Devine O. (2003). Random Error and Undercounting in Birth Defects Surveillance Data: Implications for Inference. Birth Defects Research (Part A) 67:610-616 67. Epstein, M. P., Satten, G. A. (2003). Inference on Haplotype Effects in Case-Control Studies Using Unphased Genotype Data. American Journal of Human Genetics 73: 13161329 66. Kothe D., Byers R. H., Caudill, S. P., Satten, G. A., Janssen, R. S., Hannon, W H., Mei, J. V. (2003). Performance characteristics of a New Less Sensitive HIV-1 EIA for Use in Estimating HIV Seroincidence. Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology 33:625-634 65. Cogswell, M. E., Gallagher, M. L., Steinberg, K. K., Caudill, S. P., Looker A. C., Bowman, B. A., Gunter, E. W., Franks, A.L., Satten, G. A., Khoury, M. J., Grummer-Strawn, L.M. (2003). HFE genotype and iron status in the U.S. population. Genetics in Medicine 5: 304-10 64. Williamson, J. W., Datta S., Satten, G. A. (2003). Marginal analyses of clustered data when cluster size is informative. Biometrics 59:36-42 63. Allen, A., Rathouz, P. J., Satten, G. A. (2003). Informative missingness in genetic association studies: case-parent designs. The American Journal of Human Genetics 72:671-680 62. Rathouz, P. J., Satten, G. A., Carroll, R. J. (2002). Semiparametric inference in matched case-control studies with missing covariate data. Biometrika 89:905-916 61. Datta, S., Satten G. A. (2002). Estimation of integrated transition hazards and stage occupation probabilities for non-Markov systems under dependent censoring. Biometrics 58:792-802 60. Hudgens, M. G., Satten G. A. (2002). Midrank unification of rank tests for exact, tied and censored data. Journal of Nonparametric Statistics 14: 569-581 59. Hudgens, M. G., Longini, I. M. Jr. Vanichseni, S., Hu, D. J., Kitayaporn, D., Mock, P. A., Halloran M. E., Satten, G. A., Choopanya, K., Mastro, T. D. (2002). HIV-1 subtype-specific transmission probabilities among injecting drug users in Bangkok, Thailand. American Journal of Epidemiology 155: 159-168 58. Weinstock, H., Dale, M., Gwinn, M., Satten, G. A., Kothe, D., Mei, J., Royalty, J., Linley, L., Fridlund, C., Parekh, B., Rawal, B. D., Busch, M. P., Janssen R. S. (2002). HIV Seroincidence Among Patients at Clinics for Sexually Transmitted Diseases in Nine Cities in the United States. Journal of Acquired Immune Deficiency Syndromes 29: 478-483 57. Schreiber, G. B., Glynn, S. A., Satten, G. A., Kong, F., Wright, D., Busch, M. P., Tu, Y., Kleinman S. H. (2002). HIV Seroconverting Donors Delay their Return: Screening Test Implications. Transfusion 42, 414-21 56. Satten, G. A., Datta, S. (2002). Marginal estimation for multistage models: Waiting time distributions and competing risks analyses. Statistics in Medicine 21, 3-19 55. Datta S., Satten G. A. (2001). Validity of the Aalen-Johansen estimators of stage occupation probabilities and Nelson-Aalen estimators of integrated transition hazards for non-Markov models. Statistics and Probability Letters 55, 403-411 54. Satten G. A., Datta S., Robins J. (2001) Estimating the marginal survival function in the presence of time dependent covariates. Statistics and Probability Letters 54, 397-403 53. Ghys, P. D., Diallo, M. O., Ettiegne-Traore, V., Satten, G. A., Anoma, C. K., Maurice, C., Kadjo, J.-C., Coulibaly, I.-M., Wiktor, S. Z., Greenberg, A. E., Laga, M. (2001). Effect of interventions to control sexually transmitted disease on the incidence of HIV infection in female sex workers. AIDS 15, 1421-31 52. Williamson J. M., Satten G. A., Hanson J. A., Weinstock H., Datta S. (2001). Analysis of dynamic cohort data. American Journal of Epidemiology 154, 366-372 51. Satten G. A., Datta S. (2001). The Kaplan-Meier estimator as an inverse-probability-ofcensoring weighted average. The American Statistician 55, 207-210 50. Hudgens, M. G., Satten, G. A., Longini, I. M. Jr. (2001). Nonparametric maximum likelihood estimation for competing risks survival data subject to interval censoring and truncation. Biometrics 57, 74-80 49. Parekh, B. S., Hu D. J., Vanichseni S., Satten G. A., et al. (2001). Evaluation of a Sensitive/Less-Sensitive Testing Algorithm Using the 3A11-LS Assay for Detecting Recent HIV Seroconversion Among Individuals With HIV-1 Subtype B or E Infection in Thailand. AIDS Research and Human Retroviruses 17, 453-458 48. Satten, G. A., Flanders, D., Yang, Q. (2001). Accounting for Unmeasured Population Substructure in Case - Control Studies of Genetic Association using a Novel Latent Class Model. The American Journal of Human Genetics 68, 466-477 47. Datta, S., Satten, G. A. (2000). Estimating future stage entry and occupation probabilities in a multistage model based on randomly right-censored data. Statistics and Probability Letters 50, 89-95 46. Datta, S., Satten, G. A., Datta, S. (2000). Nonparametric estimation of the stage occupation probabilities for the three stage irreversible illness-death model. Biometrics 56, 841-847 45. Satten, G. A., Datta, S. (2000). The S-U algorithm for missing data problems. Computational Statistics 15, 243-277 44. Kaplan, E. H., Satten, G. A. (2000). Repeat Screening for HIV: When to Test and Why. Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology 23, 339345 43. Satten, G. A., Carroll, R. (2000). Conditional and Unconditional Categorical Regression Models with Missing Covariates. Biometrics 56, 384-388 42. Datta, S., Satten, G. A., Williamson, J. M. (2000) Consistency and asymptotic normality of estimators in a proportional hazards model for interval censored data. Annals of the Institute of Statistical Mathematics 52, 160-172 41. McFarland, W., Busch, M. Kellogg, T. A., Rawal, B., Satten, G. A., Katz, M. H., Dilley, J., Janssen, R. S. (1999). Detection of recent infection and estimation of HIV incidence at anonymous HIV counseling and testing sites in San Francisco using a Sensitive/Less Sensitive Testing Strategy. Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology 22, 484-489 40. Satten, G. A., Janssen, R. S., Busch, M. P., Datta, S. (1999) Validating marker-based incidence estimates in repeatedly screened populations. Biometrics 55, 254-257 39. Satten, G. A. (1999) Estimating the extent of tracking in interval-censored chain-of-events data. Biometrics 55, 1228-1231 38. Kaplan, E. H., Satten, G. A. (1999) Hold Everything! Holding policies for protecting plasma supplies. Mathematical Biosciences 160, 159-173 37. Satten, G. A., Datta, S. (1999). A Kaplan-Meier form for the competing risk estimators. Statistics and Probability Letters 42, 299-304 36. Sternberg, M., Satten, G. A. (1999) Discrete-time nonparametric estimation for semi-Markov models of chain-of-events data with interval censoring and truncation. Biometrics 55, 514522 35. Satten, G. A., Sternberg, M (1999). Fitting semi-Markov models to interval-censored data with unknown initiation times. Biometrics 55, 507-513 34. Weinstock, H., Sweeney, S., Satten, et al. HIV Seroincidence and risk factors among patients repeatedly tested for HIV attending sexually transmitted disease clinics in the United States, 1991-1996 (1998). Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology 19, 506-512 33. Hendriks, J. C. M., Satten, G. A., van Ameijden, E. J., van Druten, H. A. M., Coutinho, R. A., van Griensven, G. J. P. (1998) The incubation period to AIDS among injecting drug users estimated from a CD4-staged Markov model including death. AIDS 12, 1537-1544 32. Janssen, R. S., Satten, G. A., Stramer, S., Rawal, B. D., O’Brien, T. R., Weiblen, B. J., Hecht, F. M., Jack, N., Cleghorn, F. R., Kahn, J. O., Chesney, M. A., Busch, M. P. (1998). New testing strategy to detect early HIV-1 infection for use in incidence estimates and for clinical and prevention purposes. Journal of the American Medical Association 280, 42-48 31. Palella, F. J. Jr., Delaney, K. M., Moorman, A. C., Loveless, M. O., Fuhrer, J., Satten, G. A., Aschman, R., Holmberg, S. D. (1998). Declining morbidity and mortality among patients with advanced Human Immunodeficiency Virus infection. New England Journal of Medicine 338, 853-860 30. Satten, G. A., Datta, S., Williamson, J. (1998). Inference based on imputed failure times for the proportional hazards model with interval-censored data. Journal of the American Statistical Association 93, 318-327 29. Busch, M. P., Satten, G. A. (1997). Time course of viremia and antibody seroconversion following HIV exposure. The American Journal of Medicine 102 (5B), 117-124 28. Ekpini, E. R., Wiktor, S. Z., Satten, G. A., Adjorlolo-Johnson, G. T., Sibailly, T. S., Ou, C.Y., Karon, J. M., Brattegaard, K., Whitaker, J. P., Gnaore, E., De Cock, K. M., Greenberg, A. E. (1997). Late postnatal mother-to-child transmission of HIV-1 in Abidjan, Côte d'Ivoire. The Lancet 349, 1054 27. Satten, G. A. (1997). Steady-state calculation of the risk of HIV infection from transfusion of screened blood from repeat donors. Mathematical Biosciences 141, 101-113 26. Satten, G. A. (1996). Rank-based inference in the proportional hazards model for interval censored data. Biometrika 83, 355-370 25. Satten, G. A., Longini, I. M. (1996). Markov chains with measurement error: Estimating the ‘true’ course of a marker of HIV disease progression. With discussion. Applied Statistics 45, 275-309 24. Hendriks, J. C. M., Satten, G. A., Longini, I. M., van Druten, H. A. M., Schellekens, P. T. A., Coutinho, R. A., van Griensven, G. J. P. (1996). Use of immunological markers and continuous-time Markov models to estimate progression of HIV infection among homosexual men in Amsterdam. AIDS 10, 649-656 23. Satten, G. A. (1995). Upper and lower bound distributions which give simultaneous confidence intervals for quantiles. Journal of the American Statistical Association 90, 747752 22. Lackritz, E. M., Satten, G. A., Aberle-Grasse, J., Dodd, R. Y., Raimondi, V. P., Janssen, R. S., Lewis, W. F., Notari, E. P., Petersen, L. R. (1995). Estimated risk of HIV transmission by screened blood in the United States. The New England Journal of Medicine 333, 17211725 21. Busch, M. P., Lee, L. L. L., Satten, G. A., Henrard, D. R., Farzadegan, H. Nelson, K. E., Read, S., Dodd, R. Y., Petersen, L. R. (1995). Time course of detection of viral and serological markers preceding HIV-1 seroconversion: Implications for blood and tissue donor screening. Transfusion 35, 91-97 20. Satten, G. A., Mastro, T. D., Longini, I. M. (1994). Modeling the female-to-male per-act HIV transmission probability in an emerging epidemic. Statistics in Medicine 13, 20972106 19. Petersen, L. R., Satten, G. A., Dodd, R., Bush, M., Kleinman, S., Grindon, A., Lenes, B., Karon, J., and the HIV Lookback Study Group (1994). Duration of time from HIV-1 infectiousness to detectable antibody. Transfusion 34, 283-289 18. Satten, G. A., Longini, I. M., (1994). Estimation of incidence of HIV infection using crosssectional marker surveys. Biometrics 50, 675-688 17. Johnson, E. S., Doll, L. S., Satten, G. A., Lenes, B., Molinaris, J., Shafer, A. W., Kamel, H., Petersen, L. R. (1994). The impact of direct oral questions on blood donor screening for HIV. Transfusion 34, 769-774 16. Mastro, T. D., Satten, G. A., Nopkesorn, T., Sangkharomya, S., Longini, I. M. (1994). Probability of female-to-male transmission of HIV-1 in Thailand. The Lancet 343, 204-207 15. Schwartländer, B., Janssen, R. S., Satten, G. A., Critchley, S. E., Petersen, L. R., Dondero, T. J. (1994). Guidelines for designing rapid assessment surveys of HIV seroprevalence among hospitalized patients. Public Health Reports 109, 53-59 14. Satten, G. A., Kupper, L. (1993). Inferences about exposure-disease associations using probability-of-exposure information. Journal of the American Statistical Association 88, 200-208 13. Satten, G. A., Kupper, L. (1993). Conditional regression analysis of the odds ratio between two binary variables when one is not measured with certainty: a method for epidemiologic studies. Biometrics 49, 429-440 12. Hersh, B. S., Popovici, F., Jezek, Z., Satten, G. A., Apetrei, R. C., George, R. A., Shapiro, C. N., Gayle, H., Heymann, D. L. (1993). Risk factors for HIV infection among abandoned Romanian children. AIDS 7, 1617-1624 11. Janssen, R. S., St. Louis, M. E., Satten, G. A., Critchley, S. E., Petersen, L. R., Stafford, R. S., Ward, J. W., Hanson, D. L., Olivo, N., Schable, C. A., Dondero, T. J. and the Hospital HIV Surveillance Group (1992). HIV infection among patients in acute-care U. S. hospitals: considerations for a national strategy for targeting HIV counseling and testing. The New England Journal of Medicine 327, 445-52 10. Conway, G. A., Ambrose, T. J., Chase, E., Hooper, E. Y., Helgerson, S. D., Johannes, P., Epstein, M. R., McRae, B. A., Munn, V. P., Keevama, L., Raymond, S. A., Schable, C. A., Satten, G. A., Petersen, L. R., Dondero, T. J. (1992). HIV infection in American Indians and Alaska natives: Surveys in the Indian Health Service. Journal of Acquired Immune Deficiency Syndromes 5, 803-809 9. Ou, C.-Y., Ciesielski, C. A., Myers, G., Bandea, C. I., Luo, C.-C., Korber, B. T. M., Mullins, J. I., Schochetman, G., Berkelman, R. L., Economou, A. N., Witte, J. J., Furman, L. J., Satten, G. A., Curran, J. W., Jaffe, H. W., Laboratory Investigation Group, and Epidemiologic Investigation Group (1992). Molecular epidemiology of HIV transmission in a dental practice. Science 256, 1165-1171 8. Satten, G. A., Kupper, L. (1990). Continued fraction representation for expected cell counts of a 2x2 table: A rapid and exact method for conditional maximum likelihood estimation. Biometrics 46, 217-233 7. Satten, G. A., Kupper, L. (1990). Sample size requirements for interval estimation of the odds ratio. American Journal of Epidemiology 131, 177-184 6. Satten, G. A., Kupper, L. (1990). Sample size determination for pair-matched case-control studies where the goal is interval estimation of the odds ratio. Journal of Clinical Epidemiology 43, 55-59 5. Satten, G. A., Ronis, D. (1986). Critical phenomena in randomly stirred fluids: correlation functions, equation of motion and crossover behavior. Physical Review A 33, 3415-3432 4. Satten, G. A., Ronis, D. (1985). Critical phenomena in randomly stirred fluids. Physical Review Letters 55, 91-94 3. Satten, G. A., Ronis, D. (1984). On the implications of surface reciprocal relations for thermophoresis and photophoresis. Physica 125A, 302-320 2. Satten, G. A., Ronis, D. (1984). Fluctuations in finite systems: time reversal symmetry, surface Onsager reciprocal relations and fluctuating hydrodynamics. Physica 125A, 281301 1. Satten, G. A., Ronis, D. (1982). Modification of nonequilibrium fluctuations by interaction with surfaces. Physical Review A 26, 940-949 BOOK CHAPTERS AND OTHER UNREFEREED PUBLICATIONS Datta, S., Satten, G. A., Datta, S. (2000). Stage occupation probabilities in multistage models. In, IISA Conference Proceedings Volume. Gordon and Breach Karon, J. M., Satten, G. A. (1993). Comment on “Backcalculation of HIV infection rates" by Bacchetti, P., Segal, M. R., Jewell, N. P. Statistical Science 8, 109-112 Longini, I. M., Clark, W. S., Satten, G. A., Byers, R. H, Karon, J. M. (1996). Staged Markov models based on CD4+ T-lymphocytes for the natural history of HIV infection. In, Models for Infectious Human Diseases: Their Structure and Relation to Data (eds. V. Isham, G. Medley) Cambridge University Press , 429-449 Satten, G. A. (1994). Models for markers of disease progression and their use in estimating recent HIV infection. In, Proceedings of the XVIIth International Biometric Conference Satten, G. A., Allen, A. S. and Epstein, M. P. (2006). Discussion of “Likelihood-based inference on haplotype effects in genetic association studies” by Lin, D. Y. and Zeng, D. To appear in Journal of the American Statistical Association. Satten, G. A., Grummer-Strawn, L. (1998). Cross-Sectional Study. In, The Encyclopedia of Biostatistics, pp. 1028-1031. John Wiley: Chichester, UK Satten, G. A., Janssen R. A., Stramer S. et al. (2001). Development and validation of a serologic testing algorithm for recent HIV seroconversion. In, Quantitative evaluation of HIV prevention programs (ed.s EH Kaplan, R Brookmeyer). Yale University Press Satten G. A., Datta S. (2004). Marginal analyses of multistage data. In, Handbook of Statistics Vol. 23: Advances in Survival Analysis. N. Balakrishnan and C. R. Rao, Eds. Elsevier B.V. pp 559-574