Download 72. Datta S, Satten, GA, Benos, DJ, Xia, J, Heslin

GLEN ALAN SATTEN
EDUCATION
2251 Abby Lane
Atlanta, Ga 30345
(404) 929-9786 (h)
(770) 488-6296 (w)
[email protected]
Ph.D. (1985) Chemical Physics, Harvard University.
Thesis title: Applications of Stochastic Differential
Equations in Chemical Physics.
M.A. (1981) Physics, Harvard University.
B.A. (1979) Geology, Oberlin College.
PROFESSIONAL
HISTORY
Senior Biomedical Research Service, Centers for Disease Control
and Prevention (1997 – present).
Senior Scientist, Maternal and Infant Health Branch, Division of
Reproductive Health, Centers for Disease Control and Prevention, Atlanta
Georgia (January 2006 – Present)
Mathematical Statistician, Molecular Biology Branch, Division
Laboratory Sciences, National Center for Environmental Health,
Centers for Disease Control and Prevention, Atlanta, Georgia
(January 2001 – January 2006).
Mathematical Statistician, Division of HIV/AIDS Prevention:
Surveillance and Epidemiology, National Center for HIV, STD
and TB Prevention, Centers for Disease Control and Prevention,
Atlanta, Georgia (September 1990 – December 2000).
Adjunct Professor, Department of Human Genetics, School of
Medicine, Emory University (2007 – present)
Adjunct Professor, Division of Biostatistics, School of Public Health
Emory University (August 2002 – present)
Adjunct Associate Professor, Division of Biostatistics, School of
Public Health, Emory University (August 1994 – August 2002).
Adjunct Assistant Professor, Division of Biostatistics, School of
Public Health, Emory University (February 1991 – July 1994).
National Institute of Environmental Health Sciences post-doctoral
trainee, Department of Biostatistics, School of Public Health,
University of North Carolina at Chapel Hill (June 1988 – August 1990).
Mathematics and Statistics Teacher/Peace Corps Volunteer, Kenya, East
Africa (1985 – 87).
PROFESSIONAL EXPERIENCE
Oral presentation, International Genetic Epidemiology Society meeting “Testing Association
without Calling Genotypes Allows for Systematic Differences in Read Depth and Sequencing
Error Rate between Cases and Controls,” Chicago IL (2013)
Oral presentation, American Statistical Association Meeting “Controlling Confounding in
(Genetic) Case-Control Studies using the Stratification Score,” Vancouver BC, Canada (2010)
Invited speaker, Southern Regional Council on Statistics Summer Research Conference “Robust
regression analysis of copy number variation data,” Jekyll Island, GA (2009)
Oral presentation, American Society of Human Genetics Meeting “New haplotype sharing
method for genome-wide case-control association studies implicates gene for Parkinson’s
disease,” Philadelphia PA (2008)
Oral presentation, International Genetic Epidemiology Society Meeting “New haplotype sharing
method for genome-wide case-control association studies implicates gene for Parkinson’s
disease,” St. Louis MO (2008)
Invited speaker, DIMACS Workshop on Computational Issues in Genetic Epidemiology, “New
haplotype sharing method for genome-wide case-control association studies implicates gene for
Parkinson’s disease,” New Brunswick NJ (2008)
Invited speaker, Conference on Haplotype Analysis of Population and Pedigree Data in
Association Studies, “Haplotype sharing for genome-wide case-control association studies,”
Birmingham AL (2008)
Invited speaker, Royal Statistical Society Genetic Association Studies and Public Health
Conference, “Model selection for stratification scores,” York England (2007)
Oral presentation, International Genetic Epidemiology Society Meeting, “Simple methods for
high-density copy number variation data,” York, England (2007)
Invited speaker, workshop on Application of Haplotype Sharing Methods in Gene Mapping of
Complex Diseases, “Novel Haplotype Sharing Statistics for Case-Parent Trio Data,” German
Cancer Research Center (DKFZ), Heidelberg, Germany (2006)
Invited speaker, Minisymposium: Statistical analysis for mass spectrometric proteomics,
“Standardization and Denoising Algorithms for Mass Spectra to Classify Whole-Organism
Bacterial Specimens,” Leiden University Medical Center, Leiden, the Netherlands (2006)
Oral presentation, European Mathematical Genetics Meeting, “Simple Correction for Population
Stratification in Case-Control Studies Using a Novel Confounder Score,” Cardiff, Wales (2006)
Invited speaker, Statistical Analysis of Complex Event History Data, “The fractional risk set
approach to multistage data,” Centre for Advance Study, Norwegian Academy of Science and
Letters, Oslo, Norway (2005)
Invited speaker, International Biometric Society Eastern North American Region Conference
“The fractional risk set approach to multistage data,” Austin, TX (2005)
Invited speaker, Minisymposium on Association Analysis of Candidate Genes: From Single
Point to Multipoint Methods. Leiden University Medical Center, Leiden, the Netherlands (2005)
Oral presentation, International Genetic Epidemiology Society “Semiparametric estimation of
haplotype-disease association with unphased genotype data in family-based studies,”
Nordwijkerhout, the Netherlands (2004)
Invited speaker, Joint Statistical Meetings “Estimating haplotype effects in family-based
association studies,” Toronto, Canada (2004)
Invited Speaker, International Conference on Analysis of Genomic Data “Inference on haplotype
effects in case-control studies using unphased genotype data,” Boston MA (2004)
Oral Presentation, Piedmont Genetic Epidemiology Society “Inference on Haplotype effects in
Case-Control Studies Using Unphased Genotype Data,” Durham NC (2003)
Member, American Cancer Society Biologic Specimen Advisory Group (2002-present)
Invited speaker, Joint Statistical Meetings, “Informative missingness in statistical genetics,” New
York (2002).
Invited speaker, Nordic Network for Biostatistics Workshop on New Developments in Event
History Analysis, “Marginal analyses of multistage models,” Oslo Norway (2001).
Invited speaker, IMS Fifth North American Meeting of New Researchers in Statistics and
Probability, “How I became rich and famous through statistics (an inspirational yet technical
talk),” Atlanta GA (2001).
Invited speaker, International Biometric Society ENAR meeting, “Marginal estimation for
multistage models,” Chicago IL (2000).
Invited speaker, NIAID Statistical Methodology Satellite Symposium, “Models with dependent
censoring,” Bethesda, MD (2000).
Invited speaker, Oberlin College “The biomathematics of detecting early HIV infection” (1999).
Invited speaker, International Biometric Society ENAR meeting “Estimating the extent of
tracking in interval censored chain-of-events data,” Atlanta, GA (1999).
Invited speaker, SIMS conference on Quantitative Evaluation of HIV Prevention Programs,
“Identification of persons with recent HIV infection, with application to estimating HIV
incidence among U.S. blood donors,” Domaine de Divone, France (1998).
Invited presentation “A mathematical model for the effect of a hold period on the number of
potentially infectious units made by qualified plasma donors,” Blood Products Advisory
Committee meeting, Food and Drug Administration, Bethesda, MD (1998).
Invited speaker, Indian Statistical Institute and Bernoulli Society for Mathematical Statistics and
Probability joint conference on Recent Advances in Statistics and Probability, “Staged models
of early HIV infection, with application to estimation of HIV incidence,” Calcutta, India (1997).
Discussant, AIDS in the 1990s, XVIIIth International Biometrics Conference, Amsterdam, The
Netherlands (1996).
Invited speaker and consultant, Amsterdam Municipal Health Service, “Analysis of the window
periods between detectability of viral and serologic markers of HIV infection,” Amsterdam, The
Netherlands (1996).
Invited speaker, Workshop on Statistical Modeling and Inference for the Prediction of the AIDS
Epidemic, Instituto per le Applicazioni del Calcolo Mauro Picone, “Analyzing interval censored
data from AIDS studies,” Rome, Italy (1996).
Invited speaker, Royal Statistical Society ordinary meeting, “Markov chains with measurement
error: Estimating the ‘true’ course of a marker of the progression of human immunodeficiency
virus disease,” London, UK (1995).
Invited speaker, American Statistical Association Joint Statistical Meetings, “The proportional
hazards model for interval censored data,” Orlando, Florida (1995).
Invited speaker, INFORMS Applied Probability Conference, “Hidden Markov models for
Markov chains observed with error,” Atlanta, Georgia (1995).
Invited speaker, American Statistical Association Joint Statistical Meetings, “Hidden Markov
models for Markov chains observed with error,” Toronto, Canada (1994).
Invited speaker, XVIIth International Biometric Conference, “Models for markers of disease
progression and their use in estimating recent HIV infection,” Hamilton, Canada (1994).
Oral presentation, First National Conference on Human Retroviruses and Related Infections,
“High per-act probability of female-to-male HIV-1 transmission in an emerging epidemic,”
Washington, D. C. (1993).
Invited speaker and consultant, Amsterdam Municipal Health Service, “The use of immunologic
and virologic markers in the prediction of HIV disease using staged Markov models,”
Amsterdam, The Netherlands (1993).
Invited speaker, 1993 SIMS conference on Quantitative Methods for Studying AIDS, “Models
for markers of disease progression and their use in estimating recent HIV incidence,”
Blaubeuren, Germany (1993).
Invited speaker, Human Diseases Workshop, Isaac Newton Institute for Mathematical Sciences,
Cambridge University, “Continuous-time Markov chains with measurement error: estimating
the ‘true’ course of a marker of HIV disease progression,” Cambridge, UK (1993).
Participant, Multi-cohort Analysis Project, Biostatistics Unit, Medical Research Council,
Cambridge, UK (1993).
Discussant of “Modeling the HIV Epidemic”, VIII International Conference on AIDS/III STD
World Conference, Amsterdam, the Netherlands (1992).
Invited speaker, IVth E. C. Workshop on Quantitative Analyses of AIDS Modeling, Impact
Assessment, Forecasting and Scenario-analysis, “Estimating the incidence of HIV infection
using cross-sectional marker surveys,” Bilthoven, the Netherlands (1992).
Invited speaker, Oberlin College, “How does the CDC know how many people are infected with
HIV?” Oberlin Ohio (1992).
Invited speaker, American Statistical Association Joint Statistical Meetings, “Estimating the
incidence of new HIV infections from cross-sectional prevalence surveys,” Atlanta, Georgia
(1991).
Invited speaker, American Public Health Association, “Analyzing trends in HIV seroprevalence
surveys,” Atlanta, Georgia (1991).
Invited speaker, American Statistical Association Joint Statistical Meetings, “Conditional
regression analysis of the odds ratio between two binary variables when one is not measured
with certainty,” Anaheim, California (1990).
DEPARTMENTAL SEMINARS
Division of Biostatistics, Rollins School of Public Health, Emory University (1991,1992, 1993,
1995, 1998, 1999, 2004, 2013)
Department of Biostatistics, School of Public Health, University of North Carolina, Chapel Hill
(1993, 1998, 2000, 2005)
School of Industrial and Systems Engineering, Georgia Institute of Technology (1994)
Department of Biostatistics, University of California at Berkeley (1994)
Department of Statistics, University of Georgia (1994, 1995, 1998, 2005)
Department of Statistical Science, University College, London, UK (1995)
Medical Research Council Biostatistics Unit, Cambridge, UK (1995)
Department of Statistics, Columbia University (1995)
Department of Biostatistics, Columbia University (2010)
Department of Biostatistics, School of Public Health, University of California at Los Angeles
(1995)
Department of Biostatistics, School of Hygiene and Public Health, Johns Hopkins University
(1995)
Department of Biostatistics, University of Washington (1999)
Department of Statistics and Actuarial Science, Waterloo University, Canada (1999)
Department of Biostatistics, Harvard University (2000)
Section for Medical Statistics, Oslo University School of Medicine (2001)
Department of Statistics, Operations Research and Actuarial Science, Stern School of Business,
New York University (2002)
National Institute of Environmental Health Sciences (2002)
Division of Biostatistics, University of California San Francisco (2003)
Center for Statistical Sciences, Brown University (2003)
Department of Biostatistics (Statistical Genetics Section), University of Alabama Birmingham (2003)
Memorial Sloan Kettering Cancer Center (2004)
National Cancer Institute (2004)
Department of Human Genetics, Emory University School of Medicine (2008)
National Institute of Allergy and Infectious Diseases (2010)
Center for Genomics and Molecular Medicine, University of Louisville (2010)
Division of Biostatistics, Dept. of Preventive Medicine, University of Southern California (2010)
University of Pittsburgh, Dept. of Biostatistics (2011)
University of Wisconsin, Madison Dept. of Biostatistics (2012)
TEACHING EXPERIENCE
Introduction to Statistics in Human Genetics, Department of Biostatistics, Rollins School of
Public Health, Emory University (BIOS 598R). (Fall semester, 2001)
Association Studies in Genetic Epidemiology, Department of Biostatistics, Rollins School of
Public Health, Emory University (BIOS 760R). (Spring semester 2003)
Statistics in Human Genetics, Department of Biostatistics, Rollins School of Public Health,
Emory University (BIOS 598R). (Spring semester, 2008)
GRADUATE STUDENTS SUPERVISED
Graduate co-advisor for Emory University Ph.D. candidate Lydia Coulter Kwee
(Division of Biostatistics, Rollins School of Public Health)
Graduate co-advisor for Emory University Ph.D. candidate Michael Hudgens
(Division of Biostatistics, Rollins School of Public Health)
Graduate co-advisor for Emory University Ph.D. candidate Maya
Sternberg (Division of Biostatistics, Rollins School of Public Health).
Graduate advisor for Emory University M.P.H. candidate Lyle Petersen, M. D.
(Division of Epidemiology, Rollins School of Public Health).
SERVICE TO STATISTICAL COMMUNITY
Associate Editor, Lifetime Data Analysis (1999 - present)
Associate Editor, American Journal of Epidemiology (1998 - present)
Associate Editor, Biometrics (1997 - 2005)
President, American Statistical Association Atlanta Chapter (1994 - 2005).
Member, 1999 ENAR meeting program committee, International Biometric Society
Member, 2000 ENAR meeting program committee, International Biometric Society
Chair, Statistics in Epidemiology Section, American Statistical Association (1999)
Biometrics Section representative to Council of Sections, American Statistical
Association (1996 - 1998).
Member, Outstanding Statistical Application Award committee, American Statistical
Association (1995 - 1998, 2000).
Member, Mortimer Spiegelman Award committee, American Public Health Association
(2000)
Member, Nathan Mantel Award for Outstanding Achievement in Statistics in
Epidemiolgy (2002)
Member, Search Committee for Chair/Endowed Professor, Emory University Department
of Biostatistics (2002-2003)
HONORS
Fellow, American Statistical Association (elected 2003)
National Science Foundation Graduate Fellow (1979 - 82)
Phi Beta Kappa (1978)
AWARDS
Best theoretical statistics paper by a CDC author published in 2010, “Inverse Probability of
Censoring Weighted U-statistics for Right-Censored Data with an Application to Testing
Hypotheses.”
Best applied statistics paper by a CDC author published in 2009, “A Novel Haplotype Sharing
Approach for Genome-Wide Case-Control Association Studies Implicates the Calpastatin
Gene in Parkinson's Disease.”
Best theoretical statistics paper by a CDC author published in 2005, “Locally-efficient robust
estimation of haplotype-disease association in family-based studies.”
Best applied statistics paper by a CDC author published in 2004, “Standardization and Denoising
Algorithms for Mass Spectra to Classify Whole-Organism Bacterial Specimens.”
Best theoretical statistics paper by a CDC author published in 2004, “How Special is a “Special”
Interval: Modeling Departure from Length-Biased Sampling in Renewal Processes.”
Best theoretical statistics paper by a CDC author published in 2003, “Marginal analyses of
clustered data when cluster size is informative.”
CDC and ATSDR Honor Award for Statistical Research and Services “For outstanding
accomplishments in addressing methodologic and theoretical issues in biostatistics and
statistics applied to epidemiology.” 2002
Best applied statistics paper by a CDC author published in 2001, “Analysis of dynamic cohort
data.”
Best theoretical statistics paper by a CDC author published in 2000, “The S-U algorithm for
missing data problems.”
Department of Health and Human Services Secretary’s Award for Distinguished Service (Early
HIV Infection Detection Team), May 2000
Best theoretical statistics paper by a CDC author published in 1999, “Fitting semi-Markov
models to interval-censored data with unknown initiation times.”
Outstanding Statistical Application Award, American Statistical Association (1999) for “New
testing strategy to detect early HIV-1 infection for use in incidence estimates and for
clinical and prevention purposes.”
Charles C. Shepard award for scientific excellence demonstrated by the publication of “New
testing strategy to detect early HIV-1 infection for use in incidence estimates and for
clinical and prevention purposes.” (The Shepard award is for best paper published by a
CDC author)
Best theoretical statistics paper by a CDC author published in 1998, “Inference based on imputed
failure times for the proportional hazards model with interval-censored data.”
Best applied statistics paper by a CDC author published in 1996, “Markov chains with
measurement error: estimating the ‘true’ course of a marker of the progression of human
immunodeficiency virus disease.”
Best theoretical statistics paper by a CDC author published in 1996, “Rank-based inference in
the proportional hazards model for interval censored data.”
Best applied statistics paper by a CDC author published in 1994, “Duration of time from onset of
human immunodeficiency type 1 virus infectiousness to development of detectable
antibody.”
Best theoretical statistics paper by a CDC author published in 1994, “Estimation of incidence of
HIV infection using cross-sectional marker surveys.”
PUBLICATIONS
113. Satten, G. A., Allen, A. S., Ikeda, M., Mulle, J. G., Warren, S. T. (2014). Robust
Regression Analysis of Copy Number Variation Data Based on a Univariate Score. To
appear in Plos One.
112. Satten, G. A., Biswas, S., Papachristou, C., Turkmen, A. and . König, I. R. (2014).
Population-based association and gene by environment interactions in the Genetic Analysis
Workshop 18. To appear in Genetic Epidemiology
111. Williamson, D. M., Marrie, R. A., Ashley-Koch, A., Satten, G. A. (2013). Interaction of
HLA-DRB1*1501 and TNF-alpha in a population-based case-control study of multiple
sclerosis. Immunology and Infectious Diseases 1(1):10-17
110. Epstein, M. P., Duncan, R., Jiang, Y., Conneelly, K. N., Allen, A. S. and Satten, G. A.
(2012). A Novel Permutation Procedure to Correct for Confounders in Case-Control
Studies, Including Tests of Rare Variation. The American Journal of Human Genetics
91(2):215-223
109. Satten, G. A., and Datta S. (2012). Minimum Distance Estimation of Transformation
Parameters. Journal of The Indian Statistical Association (Golden Jubilee Issue)
50:219‐239
108. Alisch, R. S., Barwick, B. G., Chopra, P., Myrick, L. K., Satten, G. A., Conneely, K. N.,
Warren, S. T. (2012). Age-associated DNA Methylation in Pediatric Populations. Genome
Research 22(4):623-32
107. Epstein, M. P., Duncan, R., Broadaway, K. A., He, M., Allen, A. S., Satten, G. A. (2012).
Stratification Score Matching Improves Correction for Confounding by Population
Stratification in Case-Control Association Studies. Genetic Epidemiology 36(3):195-205
106. Kharrazi M., Pearl M., Yang J., DeLorenze G. N., Bean C. J., Callaghan W. M., Grant A.,
Lackritz E., Romero R., Satten G., Simhan H., Torres A. R., Westover J. B., Yolken R., and
Williamson D.M. (2012) California Very Preterm Birth Study: Design and characteristics
of a population- and biospecimen bank-based nested case-control study. Paediatric and
Perinatal Epidemiology 26:250-263
105. England L. J., Kim, S. Y., Shapiro-Mendoza, C. K., Wilson, H. G., Kendrick, J. S., Satten,
G. A., Lewis, C., Whittern, P., Tucker, M. J., Callaghan, W. M. (2012). Maternal
smokeless tobacco use in Alaska Native women and singleton infant birth size. Acta
Obstetricia et Gynecologica Scandinavica 91(1):93-103
104. Xing, C., Satten, G. A., Allen A. S. (2011). A Weighted Accumulation Test for
Associating Rare Genetic Variation with Quantitative Phenotypes. BMC Proceedings
5(suppl 9):S6
103. Allen A. S., Satten, G. A. (2011) Control for Confounding in Case-Control Studies using
the Stratification Score, a Retrospective Balancing Score. Am J Epidemiol 173:752-760
102. Mulle J. G., Dodd, A. F., McGrath, J. A., Wolyniec, P. S., Mitchell, A. A., Shetty, A. C.,
Sobreira, N. L., Valle, D., Rudd, M. K., Satten, G., Cutler, D. J., Pulver, A. E., Warren, S.
T. (2010). Microdeletions in 3q29 Confer High Risk of Schizophrenia. Am J Hum Genet
87:229-236
101. Satten, G. A., Allen, A. S., Bray, S. L., Dudbridge, F., Epstein, M. P. (2010). Fast and
Robust Tests for Untyped SNPs in Case-Control Studies. Human Heredity 70:167-176
100. Datta, S., Bandyopadhyay, D., Satten, G. A. (2010). Inverse probability of censoring
Weighted U-Statistics for Right Censored Data with an Application to Testing Hypotheses.
Scan J Statistics 37:680-700
99. Abe, K., Shapiro-Mendoza, C. K, Hall, L. R., Satten, G. A. (2010). Late Preterm Birth and
the Risk of Developing Asthma. J Pediatrics 157:74-78
98. Allen A. S. and Satten G. A. (2010). SNPs in CAST are associated with Parkinson disease:
A confirmation study. American Journal of Medical Genetics Part B 153B:973-979
97. Allen A. S., Epstein M. P. and Satten G. A. (2010). Score-based Adjustment for
Confounding by Population Stratification in Genetic Association Studies. Genetic
Epidemiology 34:383-385
96. Kim S. Y., England, L., Wilson, H. G., Bish, C., Satten, G. A., Dietz, P. (2010) Fraction of
Gestational Diabetes Mellitus Attributable to Overweight and Obesity. American Journal of
Public Health 100:1047-1052
95. Liu Y., Li Y.-J., Satten, G. A., Allen, A. S., Tzeng J.-Y. (2009) A regression-based association test
for case-control studies that uses inferred ancestral haplotype similarity. Annals of Human
Genetics 73: 520-526
94. Allen, A. S. and Satten, G. A. (2009). Genome-Wide Association Analysis of Rheumatoid
Arthritis Data Via Haplotype Sharing. BMC Proceedings 3(Suppl 7):S30
93. Sarasua, S., Collins, J. S., Williamson, D. M., Satten, G. A., Allen, A. S. (2009). Effect of
Population Stratification on the Identification of Significant SNPs in Genome Wide
Association Studies. BMC Proceedings 3(Suppl 7):S13
92. Allen, A. S. and Satten, G. A. (2009). A Novel Haplotype Sharing Approach for GenomeWide Case-Control Association Studies Implicates the Calpastatin Gene in Parkinson's
Disease. Genetic Epidemiology 33:657-667
91. Moura, H., Woolfitt, A. R., Carvalho, M. G., Pavlopoulos, A., Teixeira, L. M., Satten, G A.,
and Barr, J. R. (2008). MALDI-TOFF Mass Spectrometry as a Tool for Differentiation of
Invasive and Non-Invasive Streptococcus Pyogenes Ioslates. FEMS Immunology and
Medical Microbiology 53:333-342
90. Epstein, M. P., Allen, A. S. and Satten G. A. (2008) Response to Lee et al. American
Journal of Human Genetics 82:526-8
89. Datta, S. and Satten G. A. (2008). A Signed-Rank Test for Clustered Data. Biometrics
64:501-7
88. Allen, A. S. and Satten G. A. (2008). Robust Estimation and Testing of Haplotype Effects
in Case-Control Studies. Genetic Epidemiology 32:29-40
87. Allen, A. S. and Satten G. A. (2007). Association mapping via a class of haplotype sharing
statistics. BMC Proceedings 1(Suppl 1):S123
86. Epstein, M. P., Allen A. S. and Satten G. A. (2007). A Simple and Improved Correction for
Population Stratification in Case-Control Studies. American Journal of Human Genetics
80: 921-930
85. Allen, A. S. and Satten G. A. (2007). Statistical Models for Haplotype Sharing in CaseParent Trio Data. Human Heredity 64: 35-44
84. Allen, A. S. and Satten, G. A. (2007). Inference on haplotype/disease association using
parent-affected-child data: the projection conditional on parental haplotypes method.
Genetic Epidemiology 31: 211-223
83. Kwee L. C., Epstein, M.P., Manatunga, A.K., Duncan, R., Allen, A.S. and Satten, G. A.
(2007). Simple Methods for Assessing Haplotype-Environment Interactions in Case-Only
and Case-Control Studies. Genetic Epidemiology 31:75-90
82. Steinberg, K. K., Relling, M. V., Gallagher, M. L., Greene, C. N., Rubin, C. S., French, D.,
Holmes, A. K., Carroll, W. L., Sampson, E. J. and Satten, G. A. (2007). Genetic studies of a
cluster of acute lymphoblastic leukemia in Churchill County, Nevada. Environmental
Health Perspectives 115:158-164
81. Rubin, C. S., Holmes, A. K., Belson, M., G., Jones, R. L., Flanders, W. D., Kieszak, S. M.,
Osterloh, J., Luber, G. E., Blount, B. C., Barr, D. B., Steinberg, K. K., Satten, G. A.,
McGeehin, M. A. and Todd, R. L. (2007). Investigating childhood leukemia in Churchill
County, Nevada. Environmental Health Perspectives 115:151-157
80. Epstein, M. P., Waldman, I. D., and Satten, G. S. (2006). Improved association analyses of
disease subtypes in case-parent triads. Genetic Epidemiology 30:209-219
79. Allen, A. S. and Satten, G. A. (2005). Robust testing of haplotype/disease association.
BMC Genetics 6(Suppl 1):S69
78. Bailey-Wilson, J. E., Almasy, L., de Andrade, M., Bailey, J., Bickeböllers, H., Cordell, H. J.,
Daw, W., Goldin, L., Goode, E. L., Gray-McGuire, C., Hening, W., Jarvik, G., Maher, B. S.,
Mendell, N., Paterson, A. D., Rice, J., Satten, G., Suarez, B., Vieland, V., Wilcox, M.,
Zhang, H., Ziegler, A., and MacCluer, J. W. (2005) Genetic Analysis Workshop 14:
microsatellite and single-nucleotide polymorphism marker loci for genome-wide scans.
BMC Genetics 6(Suppl 1):S1
77. Allen, A. S., Satten, G. A. and Tsiatis, A. A. (2005). Locally-efficient robust estimation of
haplotype-disease association in family-based studies. Biometrika 92:559-571
76. Datta, S., Satten, G. A. (2005). Rank sum tests for clustered data. Journal of the American
Statistical Association 100:908-915
75. Epstein, M. P., Veal, C. D., Trembath, R. C., Barker, J. N. W. N., Li, C. and Satten, G. A.
(2005). Genetic association analysis using data from nuclear families and unrelated subjects.
American Journal of Human Genetics 76: 592-608
74. Satten, G. A., Datta, S., Moura, H., Woolfitt, A. R., Carvalho, M. da G., Carlone, G. M., De,
B. K., Pavlopoulos, A., Barr, J. R. (2004). Standardization and Denoising Algorithms for
Mass Spectra to Classify Whole-Organism Bacterial Specimens. Bioinformatics 20:31283136
73. Satten, G. A., Epstein, M. P. (2004). Comparison of Prospective and Retrospective Methods
for Haplotype Inference in Case-Control Studies. Genetic Epidemiology 27:192-201
72. Datta S, Satten, G. A., Benos, D. J., Xia, J, Heslin, M. J., Datta, S. (2004). An Empirical
Bayes Adjustment to Increase the True Discovery Rate of Detecting Differentially Expressed
Genes in Microarray Experiments. Bioinformatics 20:235-242
71. Satten, G. A., Kong, F., Wright, D. J., Glynn, S. A., Schreiber, G. B. (2004). How Special is
a “Special” Interval: Modeling Departure from Length-Biased Sampling in Renewal
Processes. Biostatistics 5:145-151
70. Allen, A. S., Collins, J. S., Rathouz, P. J., Selander, C. L., Satten, G. A. (2003). Bootstrap
Calibration of TRANSMIT for Informative Missingness of Parental Genotype Data. BMC
Genetics 4(Suppl 1):S39
69. Li, Y., Ryan, L., Bellamy, S., Satten, G. A. (2003). Inference on clustered survival data
using imputed frailties. Journal of Computational and Graphical Statistics 12:640-662
68. Correa-Villaseñor, A., Satten, G.A., Rolka, H. Langlois P., Devine O. (2003). Random
Error and Undercounting in Birth Defects Surveillance Data: Implications for Inference.
Birth Defects Research (Part A) 67:610-616
67. Epstein, M. P., Satten, G. A. (2003). Inference on Haplotype Effects in Case-Control
Studies Using Unphased Genotype Data. American Journal of Human Genetics 73: 13161329
66. Kothe D., Byers R. H., Caudill, S. P., Satten, G. A., Janssen, R. S., Hannon, W H., Mei, J. V.
(2003). Performance characteristics of a New Less Sensitive HIV-1 EIA for Use in
Estimating HIV Seroincidence. Journal of Acquired Immune Deficiency Syndromes and
Human Retrovirology 33:625-634
65. Cogswell, M. E., Gallagher, M. L., Steinberg, K. K., Caudill, S. P., Looker A. C., Bowman, B.
A., Gunter, E. W., Franks, A.L., Satten, G. A., Khoury, M. J., Grummer-Strawn, L.M. (2003).
HFE genotype and iron status in the U.S. population. Genetics in Medicine 5: 304-10
64. Williamson, J. W., Datta S., Satten, G. A. (2003). Marginal analyses of clustered data when
cluster size is informative. Biometrics 59:36-42
63. Allen, A., Rathouz, P. J., Satten, G. A. (2003). Informative missingness in genetic
association studies: case-parent designs. The American Journal of Human Genetics
72:671-680
62. Rathouz, P. J., Satten, G. A., Carroll, R. J. (2002). Semiparametric inference in matched
case-control studies with missing covariate data. Biometrika 89:905-916
61. Datta, S., Satten G. A. (2002). Estimation of integrated transition hazards and stage
occupation probabilities for non-Markov systems under dependent censoring. Biometrics
58:792-802
60. Hudgens, M. G., Satten G. A. (2002). Midrank unification of rank tests for exact, tied and
censored data. Journal of Nonparametric Statistics 14: 569-581
59. Hudgens, M. G., Longini, I. M. Jr. Vanichseni, S., Hu, D. J., Kitayaporn, D., Mock, P. A.,
Halloran M. E., Satten, G. A., Choopanya, K., Mastro, T. D. (2002). HIV-1 subtype-specific
transmission probabilities among injecting drug users in Bangkok, Thailand. American
Journal of Epidemiology 155: 159-168
58. Weinstock, H., Dale, M., Gwinn, M., Satten, G. A., Kothe, D., Mei, J., Royalty, J., Linley,
L., Fridlund, C., Parekh, B., Rawal, B. D., Busch, M. P., Janssen R. S. (2002). HIV
Seroincidence Among Patients at Clinics for Sexually Transmitted Diseases in Nine Cities in
the United States. Journal of Acquired Immune Deficiency Syndromes 29: 478-483
57. Schreiber, G. B., Glynn, S. A., Satten, G. A., Kong, F., Wright, D., Busch, M. P., Tu, Y.,
Kleinman S. H. (2002). HIV Seroconverting Donors Delay their Return: Screening Test
Implications. Transfusion 42, 414-21
56. Satten, G. A., Datta, S. (2002). Marginal estimation for multistage models: Waiting time
distributions and competing risks analyses. Statistics in Medicine 21, 3-19
55. Datta S., Satten G. A. (2001). Validity of the Aalen-Johansen estimators of stage occupation
probabilities and Nelson-Aalen estimators of integrated transition hazards for non-Markov
models. Statistics and Probability Letters 55, 403-411
54. Satten G. A., Datta S., Robins J. (2001) Estimating the marginal survival function in the
presence of time dependent covariates. Statistics and Probability Letters 54, 397-403
53. Ghys, P. D., Diallo, M. O., Ettiegne-Traore, V., Satten, G. A., Anoma, C. K., Maurice, C.,
Kadjo, J.-C., Coulibaly, I.-M., Wiktor, S. Z., Greenberg, A. E., Laga, M. (2001). Effect of
interventions to control sexually transmitted disease on the incidence of HIV infection in
female sex workers. AIDS 15, 1421-31
52. Williamson J. M., Satten G. A., Hanson J. A., Weinstock H., Datta S. (2001). Analysis of
dynamic cohort data. American Journal of Epidemiology 154, 366-372
51. Satten G. A., Datta S. (2001). The Kaplan-Meier estimator as an inverse-probability-ofcensoring weighted average. The American Statistician 55, 207-210
50. Hudgens, M. G., Satten, G. A., Longini, I. M. Jr. (2001). Nonparametric maximum
likelihood estimation for competing risks survival data subject to interval censoring and
truncation. Biometrics 57, 74-80
49. Parekh, B. S., Hu D. J., Vanichseni S., Satten G. A., et al. (2001). Evaluation of a
Sensitive/Less-Sensitive Testing Algorithm Using the 3A11-LS Assay for Detecting Recent
HIV Seroconversion Among Individuals With HIV-1 Subtype B or E Infection in Thailand.
AIDS Research and Human Retroviruses 17, 453-458
48. Satten, G. A., Flanders, D., Yang, Q. (2001). Accounting for Unmeasured Population
Substructure in Case - Control Studies of Genetic Association using a Novel Latent Class
Model. The American Journal of Human Genetics 68, 466-477
47. Datta, S., Satten, G. A. (2000). Estimating future stage entry and occupation probabilities in
a multistage model based on randomly right-censored data. Statistics and Probability
Letters 50, 89-95
46. Datta, S., Satten, G. A., Datta, S. (2000). Nonparametric estimation of the stage occupation
probabilities for the three stage irreversible illness-death model. Biometrics 56, 841-847
45. Satten, G. A., Datta, S. (2000). The S-U algorithm for missing data problems.
Computational Statistics 15, 243-277
44. Kaplan, E. H., Satten, G. A. (2000). Repeat Screening for HIV: When to Test and Why.
Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology 23, 339345
43. Satten, G. A., Carroll, R. (2000). Conditional and Unconditional Categorical Regression
Models with Missing Covariates. Biometrics 56, 384-388
42. Datta, S., Satten, G. A., Williamson, J. M. (2000) Consistency and asymptotic normality of
estimators in a proportional hazards model for interval censored data. Annals of the
Institute of Statistical Mathematics 52, 160-172
41. McFarland, W., Busch, M. Kellogg, T. A., Rawal, B., Satten, G. A., Katz, M. H., Dilley, J.,
Janssen, R. S. (1999). Detection of recent infection and estimation of HIV incidence at
anonymous HIV counseling and testing sites in San Francisco using a Sensitive/Less
Sensitive Testing Strategy. Journal of Acquired Immune Deficiency Syndromes and
Human Retrovirology 22, 484-489
40. Satten, G. A., Janssen, R. S., Busch, M. P., Datta, S. (1999) Validating marker-based
incidence estimates in repeatedly screened populations. Biometrics 55, 254-257
39. Satten, G. A. (1999) Estimating the extent of tracking in interval-censored chain-of-events
data. Biometrics 55, 1228-1231
38. Kaplan, E. H., Satten, G. A. (1999) Hold Everything! Holding policies for protecting
plasma supplies. Mathematical Biosciences 160, 159-173
37. Satten, G. A., Datta, S. (1999). A Kaplan-Meier form for the competing risk estimators.
Statistics and Probability Letters 42, 299-304
36. Sternberg, M., Satten, G. A. (1999) Discrete-time nonparametric estimation for semi-Markov
models of chain-of-events data with interval censoring and truncation. Biometrics 55, 514522
35. Satten, G. A., Sternberg, M (1999). Fitting semi-Markov models to interval-censored data
with unknown initiation times. Biometrics 55, 507-513
34. Weinstock, H., Sweeney, S., Satten, et al. HIV Seroincidence and risk factors among
patients repeatedly tested for HIV attending sexually transmitted disease clinics in the United
States, 1991-1996 (1998). Journal of Acquired Immune Deficiency Syndromes and
Human Retrovirology 19, 506-512
33. Hendriks, J. C. M., Satten, G. A., van Ameijden, E. J., van Druten, H. A. M., Coutinho, R.
A., van Griensven, G. J. P. (1998) The incubation period to AIDS among injecting drug
users estimated from a CD4-staged Markov model including death. AIDS 12, 1537-1544
32. Janssen, R. S., Satten, G. A., Stramer, S., Rawal, B. D., O’Brien, T. R., Weiblen, B. J.,
Hecht, F. M., Jack, N., Cleghorn, F. R., Kahn, J. O., Chesney, M. A., Busch, M. P. (1998).
New testing strategy to detect early HIV-1 infection for use in incidence estimates and for
clinical and prevention purposes. Journal of the American Medical Association 280, 42-48
31. Palella, F. J. Jr., Delaney, K. M., Moorman, A. C., Loveless, M. O., Fuhrer, J., Satten, G. A.,
Aschman, R., Holmberg, S. D. (1998). Declining morbidity and mortality among patients
with advanced Human Immunodeficiency Virus infection. New England Journal of
Medicine 338, 853-860
30. Satten, G. A., Datta, S., Williamson, J. (1998). Inference based on imputed failure times for
the proportional hazards model with interval-censored data. Journal of the American
Statistical Association 93, 318-327
29. Busch, M. P., Satten, G. A. (1997). Time course of viremia and antibody seroconversion
following HIV exposure. The American Journal of Medicine 102 (5B), 117-124
28. Ekpini, E. R., Wiktor, S. Z., Satten, G. A., Adjorlolo-Johnson, G. T., Sibailly, T. S., Ou, C.Y., Karon, J. M., Brattegaard, K., Whitaker, J. P., Gnaore, E., De Cock, K. M., Greenberg, A.
E. (1997). Late postnatal mother-to-child transmission of HIV-1 in Abidjan, Côte d'Ivoire.
The Lancet 349, 1054
27. Satten, G. A. (1997). Steady-state calculation of the risk of HIV infection from transfusion
of screened blood from repeat donors. Mathematical Biosciences 141, 101-113
26. Satten, G. A. (1996). Rank-based inference in the proportional hazards model for interval
censored data. Biometrika 83, 355-370
25. Satten, G. A., Longini, I. M. (1996). Markov chains with measurement error: Estimating the
‘true’ course of a marker of HIV disease progression. With discussion. Applied Statistics 45,
275-309
24. Hendriks, J. C. M., Satten, G. A., Longini, I. M., van Druten, H. A. M., Schellekens, P. T. A.,
Coutinho, R. A., van Griensven, G. J. P. (1996). Use of immunological markers and
continuous-time Markov models to estimate progression of HIV infection among
homosexual men in Amsterdam. AIDS 10, 649-656
23. Satten, G. A. (1995). Upper and lower bound distributions which give simultaneous
confidence intervals for quantiles. Journal of the American Statistical Association 90, 747752
22. Lackritz, E. M., Satten, G. A., Aberle-Grasse, J., Dodd, R. Y., Raimondi, V. P., Janssen, R.
S., Lewis, W. F., Notari, E. P., Petersen, L. R. (1995). Estimated risk of HIV transmission by
screened blood in the United States. The New England Journal of Medicine 333, 17211725
21. Busch, M. P., Lee, L. L. L., Satten, G. A., Henrard, D. R., Farzadegan, H. Nelson, K. E.,
Read, S., Dodd, R. Y., Petersen, L. R. (1995). Time course of detection of viral and
serological markers preceding HIV-1 seroconversion: Implications for blood and tissue
donor screening. Transfusion 35, 91-97
20. Satten, G. A., Mastro, T. D., Longini, I. M. (1994). Modeling the female-to-male per-act
HIV transmission probability in an emerging epidemic. Statistics in Medicine 13, 20972106
19. Petersen, L. R., Satten, G. A., Dodd, R., Bush, M., Kleinman, S., Grindon, A., Lenes, B.,
Karon, J., and the HIV Lookback Study Group (1994). Duration of time from HIV-1
infectiousness to detectable antibody. Transfusion 34, 283-289
18. Satten, G. A., Longini, I. M., (1994). Estimation of incidence of HIV infection using crosssectional marker surveys. Biometrics 50, 675-688
17. Johnson, E. S., Doll, L. S., Satten, G. A., Lenes, B., Molinaris, J., Shafer, A. W., Kamel, H.,
Petersen, L. R. (1994). The impact of direct oral questions on blood donor screening for
HIV. Transfusion 34, 769-774
16. Mastro, T. D., Satten, G. A., Nopkesorn, T., Sangkharomya, S., Longini, I. M. (1994).
Probability of female-to-male transmission of HIV-1 in Thailand. The Lancet 343, 204-207
15. Schwartländer, B., Janssen, R. S., Satten, G. A., Critchley, S. E., Petersen, L. R., Dondero, T.
J. (1994). Guidelines for designing rapid assessment surveys of HIV seroprevalence among
hospitalized patients. Public Health Reports 109, 53-59
14. Satten, G. A., Kupper, L. (1993). Inferences about exposure-disease associations using
probability-of-exposure information. Journal of the American Statistical Association 88,
200-208
13. Satten, G. A., Kupper, L. (1993). Conditional regression analysis of the odds ratio between
two binary variables when one is not measured with certainty: a method for epidemiologic
studies. Biometrics 49, 429-440
12. Hersh, B. S., Popovici, F., Jezek, Z., Satten, G. A., Apetrei, R. C., George, R. A., Shapiro,
C. N., Gayle, H., Heymann, D. L. (1993). Risk factors for HIV infection among abandoned
Romanian children. AIDS 7, 1617-1624
11. Janssen, R. S., St. Louis, M. E., Satten, G. A., Critchley, S. E., Petersen, L. R., Stafford, R.
S., Ward, J. W., Hanson, D. L., Olivo, N., Schable, C. A., Dondero, T. J. and the Hospital
HIV Surveillance Group (1992). HIV infection among patients in acute-care U. S. hospitals:
considerations for a national strategy for targeting HIV counseling and testing. The New
England Journal of Medicine 327, 445-52
10. Conway, G. A., Ambrose, T. J., Chase, E., Hooper, E. Y., Helgerson, S. D., Johannes, P.,
Epstein, M. R., McRae, B. A., Munn, V. P., Keevama, L., Raymond, S. A., Schable, C. A.,
Satten, G. A., Petersen, L. R., Dondero, T. J. (1992). HIV infection in American Indians and
Alaska natives: Surveys in the Indian Health Service. Journal of Acquired Immune
Deficiency Syndromes 5, 803-809
9. Ou, C.-Y., Ciesielski, C. A., Myers, G., Bandea, C. I., Luo, C.-C., Korber, B. T. M., Mullins,
J. I., Schochetman, G., Berkelman, R. L., Economou, A. N., Witte, J. J., Furman, L. J.,
Satten, G. A., Curran, J. W., Jaffe, H. W., Laboratory Investigation Group, and
Epidemiologic Investigation Group (1992). Molecular epidemiology of HIV transmission in
a dental practice. Science 256, 1165-1171
8. Satten, G. A., Kupper, L. (1990). Continued fraction representation for expected cell counts
of a 2x2 table: A rapid and exact method for conditional maximum likelihood estimation.
Biometrics 46, 217-233
7. Satten, G. A., Kupper, L. (1990). Sample size requirements for interval estimation of the
odds ratio. American Journal of Epidemiology 131, 177-184
6. Satten, G. A., Kupper, L. (1990). Sample size determination for pair-matched case-control
studies where the goal is interval estimation of the odds ratio. Journal of Clinical
Epidemiology 43, 55-59
5. Satten, G. A., Ronis, D. (1986). Critical phenomena in randomly stirred fluids: correlation
functions, equation of motion and crossover behavior. Physical Review A 33, 3415-3432
4. Satten, G. A., Ronis, D. (1985). Critical phenomena in randomly stirred fluids. Physical
Review Letters 55, 91-94
3. Satten, G. A., Ronis, D. (1984). On the implications of surface reciprocal relations for
thermophoresis and photophoresis. Physica 125A, 302-320
2. Satten, G. A., Ronis, D. (1984). Fluctuations in finite systems: time reversal symmetry,
surface Onsager reciprocal relations and fluctuating hydrodynamics. Physica 125A, 281301
1. Satten, G. A., Ronis, D. (1982). Modification of nonequilibrium fluctuations by interaction
with surfaces. Physical Review A 26, 940-949
BOOK CHAPTERS AND OTHER UNREFEREED PUBLICATIONS
Datta, S., Satten, G. A., Datta, S. (2000). Stage occupation probabilities in
multistage models. In, IISA Conference Proceedings Volume. Gordon and
Breach
Karon, J. M., Satten, G. A. (1993). Comment on “Backcalculation
of HIV infection rates" by Bacchetti, P., Segal, M. R., Jewell,
N. P. Statistical Science 8, 109-112
Longini, I. M., Clark, W. S., Satten, G. A., Byers, R. H, Karon, J. M.
(1996). Staged Markov models based on CD4+ T-lymphocytes for
the natural history of HIV infection. In, Models for Infectious
Human Diseases: Their Structure and Relation to Data
(eds. V. Isham, G. Medley) Cambridge University Press , 429-449
Satten, G. A. (1994). Models for markers of disease progression
and their use in estimating recent HIV infection. In, Proceedings of
the XVIIth International Biometric Conference
Satten, G. A., Allen, A. S. and Epstein, M. P. (2006). Discussion of “Likelihood-based inference
on haplotype effects in genetic association studies” by Lin, D. Y. and Zeng, D. To
appear in Journal of the American Statistical Association.
Satten, G. A., Grummer-Strawn, L. (1998). Cross-Sectional Study. In, The Encyclopedia
of Biostatistics, pp. 1028-1031. John Wiley: Chichester, UK
Satten, G. A., Janssen R. A., Stramer S. et al. (2001). Development and validation of a
serologic testing algorithm for recent HIV seroconversion. In, Quantitative evaluation
of HIV prevention programs (ed.s EH Kaplan, R Brookmeyer). Yale University
Press
Satten G. A., Datta S. (2004). Marginal analyses of multistage data. In, Handbook of Statistics
Vol. 23: Advances in Survival Analysis. N. Balakrishnan and C. R. Rao, Eds. Elsevier
B.V. pp 559-574