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Transcript
Data Mining
Cluster Analysis: Basic Concepts
and Algorithms
L t
Lecture
N
Notes
t ffor Chapter
Ch t 8
Introduction to Data Mining
by
Tan Steinbach
Tan,
Steinbach, Kumar
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
1
What is Cluster Analysis?
z
Finding groups of objects such that the objects in a group
will be similar (or related) to one another and different
from (or unrelated to) the objects in other groups
Inter-cluster
distances are
maximized
Intra-cluster
distances are
minimized
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
2
Applications of Cluster Analysis
z
Discovered Clusters
Understanding
– Group related documents
for browsing, group genes
and proteins that have
similar functionality, or
group stocks with similar
price fluctuations
z
Industry Group
Applied-Matl-DOWN,Bay-Network-Down,3-COM-DOWN,
Cabletron-Sys-DOWN,CISCO-DOWN,HP-DOWN,
DSC-Comm-DOWN,INTEL-DOWN,LSI-Logic-DOWN,
Micron-Tech-DOWN,Texas-Inst-Down,Tellabs-Inc-Down,
Natl-Semiconduct-DOWN,Oracl-DOWN,SGI-DOWN,
Sun-DOWN
Apple-Comp-DOWN
Apple
Comp DOWN,Autodesk
Autodesk-DOWN
DOWN,DEC
DEC-DOWN
DOWN,
ADV-Micro-Device-DOWN,Andrew-Corp-DOWN,
Computer-Assoc-DOWN,Circuit-City-DOWN,
Compaq-DOWN, EMC-Corp-DOWN, Gen-Inst-DOWN,
Motorola-DOWN,Microsoft-DOWN,Scientific-Atl-DOWN
1
2
Fannie-Mae-DOWN,Fed-Home-Loan-DOWN,
MBNA-Corp-DOWN,Morgan-Stanley-DOWN
3
4
Baker-Hughes-UP,Dresser-Inds-UP,Halliburton-HLD-UP,
Louisiana-Land-UP,Phillips-Petro-UP,Unocal-UP,
Schlumberger-UP
Technology1-DOWN
Technology2-DOWN
Financial-DOWN
Oil-UP
Summarization
– Reduce the size of large
data sets
Clustering precipitation
in Australia
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
3
What is not Cluster Analysis?
z
Supervised classification
– Have class label information
z
Simple segmentation
– Dividing students into different registration groups
alphabetically, by last name
z
Results of a query
– Groupings are a result of an external specification
z
Graph partitioning
– Some mutual relevance and synergy, but areas are not
identical
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
4
Notion of a Cluster can be Ambiguous
How many clusters?
Six Clusters
Two Clusters
Four Clusters
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
5
Types of Clusterings
z
A clustering is a set of clusters
z
Important
p
distinction between hierarchical and
partitional sets of clusters
z
Partitional Clustering
– A division data objects into non-overlapping subsets (clusters)
such that each data object is in exactly one subset
z
Hi
Hierarchical
hi l clustering
l t i
– A set of nested clusters organized as a hierarchical tree
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
6
Partitional Clustering
Original Points
A Partitional Clustering
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
7
Hierarchical Clustering
p1
p3
p4
p2
p1 p2
Traditional Hierarchical Clustering
p3 p4
Traditional Dendrogram
p1
p3
p4
p2
p1 p2
Non-traditional Hierarchical Clustering
© Tan,Steinbach, Kumar
p3 p4
Non-traditional Dendrogram
Introduction to Data Mining
4/18/2004
8
Other Distinctions Between Sets of Clusters
z
Exclusive versus non-exclusive
– In non-exclusive clusterings, points may belong to multiple
clusters.
– Can
C representt multiple
lti l classes
l
or ‘b
‘border’
d ’ points
i t
z
Fuzzy versus non-fuzzy
– In fuzzy clustering, a point belongs to every cluster with some
weight between 0 and 1
– Weights must sum to 1
– Probabilistic clustering has similar characteristics
z
Partial versus complete
– In some cases, we only want to cluster some of the data
z
Heterogeneous versus homogeneous
– Cluster of widely different sizes, shapes, and densities
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
9
4/18/2004
10
Types of Clusters
z
Well-separated clusters
z
Center based clusters
Center-based
z
Contiguous clusters
z
Density-based clusters
z
Property or Conceptual
z
Described by an Objective Function
© Tan,Steinbach, Kumar
Introduction to Data Mining
Types of Clusters: Well-Separated
z
Well-Separated Clusters:
– A cluster is a set of points such that any point in a cluster is
closer (or more similar) to every other point in the cluster than
t any point
to
i t nott in
i the
th cluster.
l t
3 well-separated clusters
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
11
Types of Clusters: Center-Based
z
Center-based
– A cluster is a set of objects such that an object in a cluster is
closer (more similar) to the “center” of a cluster, than to the
center
t off any other
th cluster
l t
– The center of a cluster is often a centroid, the average of all
the points in the cluster, or a medoid, the most “representative”
point of a cluster
4 center-based clusters
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
12
Types of Clusters: Contiguity-Based
z
Contiguous Cluster (Nearest neighbor or
Transitive)
– A cluster is a set of p
points such that a p
point in a cluster is
closer (or more similar) to one or more other points in the
cluster than to any point not in the cluster.
8 contiguous clusters
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
13
Types of Clusters: Density-Based
z
Density-based
– A cluster is a dense region of points, which is separated by
low-density regions, from other regions of high density.
– Used when the clusters are irregular or intertwined, and when
noise and outliers are present.
6 density-based clusters
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
14
Types of Clusters: Conceptual Clusters
z
Shared Property or Conceptual Clusters
– Finds clusters that share some common property or represent
a particular concept.
.
2 Overlapping Circles
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
15
4/18/2004
19
Clustering Algorithms
z
K-means and its variants
z
Hierarchical clustering
z
Density-based clustering
© Tan,Steinbach, Kumar
Introduction to Data Mining
K-means Clustering
z
Partitional clustering approach
z
Each cluster is associated with a centroid (center point)
z
Each p
point is assigned
g
to the cluster with the closest
centroid
z
Number of clusters, K, must be specified
z
The basic algorithm is very simple
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
20
K-means Clustering – Details
z
Initial centroids are often chosen randomly.
–
Clusters produced vary from one run to another.
z
The centroid is (typically) the mean of the points in the
cluster.
cluster
z
‘Closeness’ is measured by Euclidean distance, cosine
similarity, correlation, etc.
z
K-means will converge for common similarity measures
mentioned above.
z
Most of the convergence happens in the first few
iterations.
–
z
Often the stopping condition is changed to ‘Until relatively few
points change clusters’
Complexity is O( n * K * I * d )
–
n = number of points, K = number of clusters,
I = number of iterations, d = number of attributes
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
21
Two different K-means Clusterings
3
2.5
Original Points
2
y
1.5
1
0.5
0
-2
-1.5
-1
-0.5
0
0.5
1
1.5
2
x
3
3
2.5
2.5
y
2
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y
2
1.5
1
1
0.5
0.5
0
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-1.5
-1
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0
0.5
1
1.5
2
-2
-1.5
-1
x
-0.5
0
0.5
1
1.5
2
x
Optimal Clustering
© Tan,Steinbach, Kumar
Sub-optimal Clustering
Introduction to Data Mining
4/18/2004
22
Importance of Choosing Initial Centroids
Iteration 6
1
2
3
4
5
3
2.5
2
y
1.5
1
0.5
0
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-1.5
-1
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x
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
23
Importance of Choosing Initial Centroids
Iteration 1
Iteration 2
Iteration 3
2.5
2.5
2.5
2
2
2
1.5
1.5
1.5
y
3
y
3
y
3
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1
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2
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x
0
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-2
Iteration 4
Iteration 5
2.5
2
2
1.5
1.5
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0.5
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0
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x
-0.5
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1.5
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-2
x
© Tan,Steinbach, Kumar
0
y
2.5
2
y
2.5
y
3
-1
-0.5
Iteration 6
3
-1.5
-1
x
3
-2
-1.5
x
Introduction to Data Mining
-1.5
-1
-0.5
0
0.5
x
4/18/2004
24
Evaluating K-means Clusters
z
Most common measure is Sum of Squared Error (SSE)
– For each point, the error is the distance to the nearest cluster
– To get SSE, we square these errors and sum them.
K
SSE = ∑ ∑ dist 2 (mi , x )
i =1 x∈Ci
– x is a data point in cluster Ci and mi is the representative point for
cluster Ci
‹
can show that mi corresponds to the center (mean) of the cluster
– Given two clusters,, we can choose the one with the smallest
error
– One easy way to reduce SSE is to increase K, the number of
clusters
A good clustering with smaller K can have a lower SSE than a poor
clustering with higher K
‹
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
25
Importance of Choosing Initial Centroids …
Iteration 5
1
2
3
4
3
2.5
2
y
1.5
1
0.5
0
-2
-1.5
-1
-0.5
0
0.5
1
1.5
2
x
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
26
Importance of Choosing Initial Centroids …
Iteration 1
Iteration 2
3
3
2.5
2.5
1.5
y
2
1.5
y
2
1
1
0.5
0.5
0
0
-2
-1.5
-1
-0.5
0
0.5
1
1.5
2
-2
-1.5
-1
-0.5
x
0
0.5
Iteration 3
2.5
2
2
1.5
1.5
1.5
y
2.5
2
y
2.5
y
3
1
1
1
0.5
0.5
0.5
0
0
-1
-0.5
0
0.5
x
© Tan,Steinbach, Kumar
2
Iteration 5
3
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1.5
Iteration 4
3
-2
1
x
1
1.5
2
0
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-1.5
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0
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x
Introduction to Data Mining
1.5
2
-2
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-1
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0
0.5
1
1.5
2
x
4/18/2004
27
Problems with Selecting Initial Points
z
If there are K ‘real’ clusters then the chance of selecting
one centroid from each cluster is small.
–
Chance is relatively small when K is large
–
If clusters are the same size, n, then
–
For example, if K = 10, then probability = 10!/1010 = 0.00036
–
Sometimes the initial centroids will readjust themselves in
‘right’ way, and sometimes they don’t
–
Consider an example of five pairs of clusters
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
28
10 Clusters Example
Iteration 4
1
2
3
8
6
4
y
2
0
-2
-4
-6
0
5
10
15
20
x
Starting with two initial centroids in one cluster of each pair of clusters
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
29
10 Clusters Example
Iteration 2
8
6
6
4
4
2
2
y
y
Iteration 1
8
0
0
-2
-2
-4
-4
-6
-6
0
5
10
15
20
0
5
x
15
20
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20
Iteration 4
8
6
6
4
4
2
2
y
y
10
x
Iteration 3
8
0
0
-2
-2
-4
-4
-6
-6
0
5
10
15
20
0
5
10
x
x
Starting with two initial centroids in one cluster of each pair of clusters
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
30
10 Clusters Example
Iteration 4
1
2
3
8
6
4
y
2
0
-2
-4
-6
0
5
10
15
20
x
Starting with some pairs of clusters having three initial centroids, while other have only one.
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
31
10 Clusters Example
Iteration 2
8
6
6
4
4
2
2
y
y
Iteration 1
8
0
0
-2
-2
-4
-4
-6
-6
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20
x
Iteration
4
8
6
6
4
4
2
2
y
y
x
Iteration
3
8
0
0
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-4
-4
-6
-6
0
5
10
15
20
x
0
5
10
x
Starting with some pairs of clusters having three initial centroids, while other have only one.
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
32
Solutions to Initial Centroids Problem
z
Multiple runs
– Helps, but probability is not on your side
Sample and use hierarchical clustering to
determine initial centroids
z Select more than k initial centroids and then
select among these initial centroids
z
– Select most widely separated
Postprocessing
p
g
z Bisecting K-means
z
– Not as susceptible to initialization issues
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
33
Handling Empty Clusters
z
Basic K-means algorithm can yield empty
clusters
z
Several strategies
– Choose the point that contributes most to SSE
– Choose a point from the cluster with the highest SSE
– If there are several empty clusters, the above can be
repeated several times.
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
34
Updating Centers Incrementally
z
In the basic K-means algorithm, centroids are
updated after all points are assigned to a centroid
z
An alternative is to update the centroids after
each assignment (incremental approach)
–
–
–
–
–
Each assignment updates zero or two centroids
More expensive
Introduces an order dependency
Never get an empty cluster
Can use “weights” to change the impact
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
35
Pre-processing and Post-processing
z
Pre-processing
– Normalize the data
– Eliminate
Eli i t outliers
tli
z
Post-processing
– Eliminate small clusters that may represent outliers
– Split ‘loose’ clusters, i.e., clusters with relatively high
SSE
– Merge clusters that are ‘close’ and that have relatively
low SSE
– Can use these steps during the clustering process
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
36
Bisecting K-means
z
Bisecting K-means algorithm
–
Variant of K-means that can produce a partitional or a
hierarchical clustering
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
37
Bisecting K-means Example
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
38
Limitations of K-means
z
K-means has problems when clusters are of
differing
– Sizes
– Densities
– Non-globular shapes
z
K-means has problems when the data contains
outliers.
tli
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
39
Limitations of K-means: Differing Sizes
K-means (3 Clusters)
Original Points
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
40
Limitations of K-means: Differing Density
K-means (3 Clusters)
Original Points
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
41
Limitations of K-means: Non-globular Shapes
Original Points
© Tan,Steinbach, Kumar
K-means (2 Clusters)
Introduction to Data Mining
4/18/2004
42
Overcoming K-means Limitations
Original Points
K-means Clusters
One solution is to use many clusters.
Find parts of clusters, but need to put together.
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
43
Overcoming K-means Limitations
Original Points
© Tan,Steinbach, Kumar
K-means Clusters
Introduction to Data Mining
4/18/2004
44
Overcoming K-means Limitations
Original Points
© Tan,Steinbach, Kumar
K-means Clusters
Introduction to Data Mining
4/18/2004
45
Hierarchical Clustering
Produces a set of nested clusters organized as a
hierarchical tree
z Can
C b
be visualized
i
li d as a d
dendrogram
d
z
– A tree like diagram that records the sequences of
merges or splits
5
6
0.2
4
3
4
2
0 15
0.15
5
2
0.1
1
0.05
3
0
1
© Tan,Steinbach, Kumar
3
2
5
4
1
6
Introduction to Data Mining
4/18/2004
46
Strengths of Hierarchical Clustering
z
Do not have to assume any particular number of
clusters
– Any desired number of clusters can be obtained by
‘cutting’ the dendogram at the proper level
z
They may correspond to meaningful taxonomies
– Example in biological sciences (e.g., animal kingdom,
phylogeny reconstruction, …)
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
47
Hierarchical Clustering
z
Two main types of hierarchical clustering
– Agglomerative:
‹
Start with the points as individual clusters
At each step, merge the closest pair of clusters until only one cluster
(or k clusters) left
‹
– Divisive:
‹
Start with one, all-inclusive cluster
At each step, split a cluster until each cluster contains a point (or
there are k clusters))
‹
z
Traditional hierarchical algorithms use a similarity or
distance matrix
– Merge or split one cluster at a time
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
48
Agglomerative Clustering Algorithm
z
More popular hierarchical clustering technique
z
Basic algorithm is straightforward
1
1.
C
Compute
t the
th proximity
i it matrix
ti
2.
Let each data point be a cluster
3.
Repeat
4.
Merge the two closest clusters
5.
Update the proximity matrix
6.
z
Until only a single cluster remains
Key operation is the computation of the proximity of
two clusters
–
Different approaches to defining the distance between
clusters distinguish the different algorithms
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
49
Starting Situation
z
Start with clusters of individual points and a
proximity matrix
p1 p2
p3
p4 p5
...
p1
p2
p3
p4
p5
.
.
Proximity Matrix
.
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
50
Intermediate Situation
z
After some merging steps, we have some clusters
C1
C2
C3
C4
C5
C1
C2
C3
C3
C4
C4
C5
Proximity Matrix
C1
C2
© Tan,Steinbach, Kumar
C5
Introduction to Data Mining
4/18/2004
51
Intermediate Situation
z
We want to merge the two closest clusters (C2 and C5) and
update the proximity matrix.
C1 C2
C3
C4 C5
C1
C2
C3
C3
C4
C4
C5
Proximity Matrix
C1
C5
C2
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
52
After Merging
z
The question is “How do we update the proximity matrix?”
C1
C2 U C5
C4
C3
C4
?
?
?
C1
C3
C2
U
C5
?
?
C3
?
C4
?
Proximity Matrix
C1
C2 U C5
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
53
How to Define Inter-Cluster Similarity
p1
Similarity?
p2
p3
p4 p5
...
p1
p2
p3
p4
z
z
z
z
z
p5
MIN
.
MAX
.
Group Average
.
Proximity Matrix
Distance Between Centroids
C
Other methods driven by an objective
function
– Ward’s Method uses squared error
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
54
How to Define Inter-Cluster Similarity
p1
p2
p3
p4 p5
...
p1
p2
p3
p4
z
z
z
z
z
p5
MIN
.
MAX
.
Group Average
.
Proximity Matrix
Distance Between Centroids
C
Other methods driven by an objective
function
– Ward’s Method uses squared error
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
55
How to Define Inter-Cluster Similarity
p1
p2
p3
p4 p5
...
p1
p2
p3
p4
z
z
z
z
z
p5
MIN
.
MAX
.
Group Average
.
Proximity Matrix
Distance Between Centroids
C
Other methods driven by an objective
function
– Ward’s Method uses squared error
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
56
How to Define Inter-Cluster Similarity
p1
p2
p3
p4 p5
...
p1
p2
p3
p4
z
z
z
z
z
p5
MIN
.
MAX
.
Group Average
.
Proximity Matrix
Distance Between Centroids
C
Other methods driven by an objective
function
– Ward’s Method uses squared error
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
57
How to Define Inter-Cluster Similarity
p1
p2
p3
p4 p5
...
p1
×
×
p2
p3
p4
z
z
z
z
z
p5
MIN
.
MAX
.
Group Average
.
Proximity Matrix
Distance Between Centroids
C
Other methods driven by an objective
function
– Ward’s Method uses squared error
© Tan,Steinbach, Kumar
Introduction to Data Mining
4/18/2004
58
Cluster Similarity: MIN or Single Link
z
Similarity of two clusters is based on the two
most similar (closest) points in the different
clusters
– Determined by one pair of points, i.e., by one link in
the proximity graph.
I1
I2
I3
I4
I5
I1
1.00
0.90
0.10
0.65
0.20
© Tan,Steinbach, Kumar
I2
0.90
1.00
0.70
0.60
0.50
I3
0.10
0.70
1.00
0.40
0.30
I4
0.65
0.60
0.40
1.00
0.80
I5
0.20
0.50
0.30
0.80
1.00
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Hierarchical Clustering: MIN
1
5
3
5
0.2
2
1
2
3
0.15
6
0.1
0.05
4
4
0
Nested Clusters
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6
2
5
4
1
Dendrogram
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Strength of MIN
Original
g
Points
Two Clusters
• Can handle non-elliptical shapes
© Tan,Steinbach, Kumar
Introduction to Data Mining
Limitations of MIN
Original Points
Two Clusters
• Sensitive to noise and outliers
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Cluster Similarity: MAX or Complete Linkage
z
Similarity of two clusters is based on the two least
similar (most distant) points in the different
clusters
– Determined by all pairs of points in the two clusters
I1
I1 1.00
I2 0.90
0 90
I3 0.10
I4 0.65
I5 0.20
© Tan,Steinbach, Kumar
I2 I3 I4 I5
0.90 0.10 0.65 0.20
1 00 0.70
1.00
0 70 0.60
0 60 0.50
0 50
0.70 1.00 0.40 0.30
0.60 0.40 1.00 0.80
0.50 0.30 0.80 1.00
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Hierarchical Clustering: MAX
4
1
2
5
5
0.4
0.35
0.3
2
0.25
3
3
6
0.2
0.15
1
0.1
0.05
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0
Nested Clusters
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3
6
4
1
2
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Dendrogram
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Strength of MAX
Original Points
Two Clusters
• Less susceptible to noise and outliers
© Tan,Steinbach, Kumar
Introduction to Data Mining
Limitations of MAX
Original Points
Two Clusters
•Tends to break large clusters
•Biased towards globular clusters
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Cluster Similarity: Group Average
z
Proximity of two clusters is the average of pairwise proximity
between points in the two clusters.
∑ proximity(p , p )
i
proximity(Clusteri , Clusterj ) =
z
j
pi∈Cluster
Cl ste i
p j∈Clusterj
|Clusteri |∗|Clusterj |
Need to use average connectivity for scalability since total
proximity favors large clusters
I1
I2
I3
I4
I5
I1
1.00
0.90
0.10
0.65
0.20
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I2
0.90
1.00
0.70
0.60
0.50
I3
0.10
0.70
1.00
0.40
0.30
I4
0.65
0.60
0.40
1.00
0.80
I5
0.20
0.50
0.30
0.80
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Hierarchical Clustering: Group Average
5
4
1
0.25
2
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0.2
2
0.15
3
6
1
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0.1
0.05
0
Nested Clusters
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Dendrogram
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Hierarchical Clustering: Group Average
z
Compromise between Single and Complete
Link
z
Strengths
– Less susceptible to noise and outliers
z
Li it ti
Limitations
– Biased towards globular clusters
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Cluster Similarity: Ward’s Method
z
Similarity of two clusters is based on the increase
in squared error when two clusters are merged
– Similar to group average if distance between points is
distance squared
z
Less susceptible to noise and outliers
z
Biased towards g
globular clusters
z
Hierarchical analogue of K-means
– Can be used to initialize K-means
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Hierarchical Clustering: Comparison
1
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2
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MIN
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2
MAX
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3
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Ward’s Method
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3
3
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5
2
Group Average
3
1
4
4
4
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Hierarchical Clustering: Time and Space requirements
z
O(N2) space since it uses the proximity matrix.
– N is the number of points.
z
O(N3) time in many cases
– There are N steps and at each step the size, N2,
proximity matrix must be updated and searched
– Complexity can be reduced to O(N2 log(N) ) time for
some approaches
© Tan,Steinbach, Kumar
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DBSCAN
z
DBSCAN is a density-based algorithm.
–
Density = number of points within a specified radius (Eps)
–
A point is a core point if it has more than a specified number
of points (MinPts) within Eps
‹
These are points that are at the interior of a cluster
–
A border point has fewer than MinPts within Eps, but is in
the neighborhood of a core point
–
A noise point is any point that is not a core point or a border
point.
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DBSCAN: Core, Border, and Noise Points
© Tan,Steinbach, Kumar
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DBSCAN Algorithm
Eliminate noise points
z Perform clustering on the remaining points
z
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DBSCAN: Core, Border and Noise Points
Original Points
Point types: core,
border and noise
Eps = 10, MinPts = 4
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When DBSCAN Works Well
O i i l Points
Original
P i t
Clusters
• Resistant to Noise
• Can handle clusters of different shapes and sizes
© Tan,Steinbach, Kumar
Introduction to Data Mining
When DBSCAN Does NOT Work Well
(MinPts=4, Eps=9.75).
Original Points
• Varying densities
• High-dimensional data
(MinPts=4, Eps=9.92)
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DBSCAN: Determining EPS and MinPts
z
z
z
Idea is that for points in a cluster, their kth nearest
neighbors are at roughly the same distance
Noise p
points have the kth nearest neighbor
g
at farther
distance
So, plot sorted distance of every point to its kth
nearest neighbor
© Tan,Steinbach, Kumar
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Measures of Cluster Validity
z
Numerical measures that are applied to judge various aspects
of cluster validity, are classified into the following three types.
– External Index: Used to measure the extent to which cluster labels
match externally supplied class labels
labels.
‹
Entropy
– Internal Index: Used to measure the goodness of a clustering
structure without respect to external information.
‹
Sum of Squared Error (SSE)
– Relative Index: Used to compare two different clusterings or
clusters.
‹
z
Often an external or internal index is used for this function, e.g.,
g SSE or
entropy
Sometimes these are referred to as criteria instead of indices
– However, sometimes criterion is the general strategy and index is the
numerical measure that implements the criterion.
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Internal Measures: Cohesion and Separation
z
Cluster Cohesion: Measures how closely related
are objects in a cluster
– Example: SSE
z
Cluster Separation: Measure how distinct or wellseparated a cluster is from other clusters
z
Example: Squared Error
– Cohesion is measured by the within cluster sum of squares (SSE)
WSS = ∑ ∑ ( x − mi )2
i x∈C i
– Separation is measured by the between cluster sum of squares
BSS = ∑ Ci ( m − mi ) 2
i
– Where |Ci| is the size of cluster i
© Tan,Steinbach, Kumar
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Internal Measures: Cohesion and Separation
z
A proximity graph based approach can also be used for
cohesion and separation.
– Cluster cohesion is the sum of the weight of all links within a cluster.
– Cluster separation is the sum of the weights between nodes in the cluster
and nodes outside the cluster.
cohesion
© Tan,Steinbach, Kumar
separation
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Final Comment on Cluster Validity
“The validation of clustering structures is the most
difficult and frustrating part of cluster analysis.
Without a strong effort in this direction, cluster
analysis will remain a black art accessible only to
those true believers who have experience and
great courage.”
Algorithms for
f Clustering
C
Data, Jain and Dubes
© Tan,Steinbach, Kumar
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