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Chapter 7 CELLULAR STRUCTURE AND FUNCTION Section 1 CELL DISCOVERY AND THEORY Introduction Cells are the simplest collection of matter that can live. Cells were first observed by Robert Hooke in 1665. Working with more refined lenses, Antoni van Leeuwenhoek later described – blood, – sperm, and – organisms living in pond water. Microscope Technology INTRODUCTION TO THE CELL Difference between Magnification and Resolution Magnification is the increase in the apparent size of an object. Resolution is a measure of the clarity of an image. In other words, it is the ability of an instrument to show two close objects as separate. The cell theory 1- All living cells are composed of one or more cells 2- Cells are the basic unit of structure and organization of all living organisms 3- cells arise only from previously existing cells, with cells passing copies of their genetic material on to their daughter cells. Light microscope (LM) Electron Microscope (EM) Light passes through a specimen, then through glass lenses, and finally light is projected into the viewer’s eye. EM uses a beam of electrons instead of light Specimens can be magnified up to 1000 times Resolve biological structures as small as 2 nanometers and Cannot provide the details of a small cell’s structure. Magnify up to 100,000 times. Two Types of EM 1- Scanning electron microscopes (SEM) study the detailed architecture of cell surfaces. 2- Transmission electron microscopes (TEM) study the details of internal cell structure. 10 m 100 mm (10 cm) Length of some nerve and muscle cells Chicken egg 10 mm (1 cm) Unaided eye Human height 1m Frog egg 10 m 1 m 100 nm Most plant and animal cells Nucleus Most bacteria Mitochondrion Smallest bacteria Viruses Ribosome 10 nm Proteins Lipids 1 nm 0.1 nm Small molecules Atoms Electron microscope 100 m Paramecium Human egg Light microscope 1 mm Basic cell Types Prokaryotes Eukaryotes Have Plasma membrane Have Plasma membrane Have DNA coiled into a region called the nucleoid, but no membrane surrounds the DNA. Have DNA bounded in a nucleus Have cytoplasm Have Cytoplasm Have ribosomes Have ribosomes No true-bounded organelles Have number of organelles Prokaryotes Eukaryotes Examples: Bacteria and archaea Examples: Human, Animals, Plants, Fungi Unicellular Organisms Multicellular Organisms The surface of the prokaryotic cells may: - Be surrounded by cell wall - Have a capsule surrounding the cell wall - Have longer projections called flagella for movement - Have short projections, that help attach to other cells or substrate. The structures and organelles of eukaryotic cells perform four basic functions © 2012 Pearson Education, Inc. 1. The nucleus and ribosomes are involved in the genetic control of the cell. 2. The endoplasmic reticulum, Golgi apparatus, lysosomes, vacuoles, and peroxisomes are involved in the manufacture, distribution, and breakdown of molecules. 3. Mitochondria in all cells and chloroplasts in plant cells are involved in energy processing. 4. Structural support, movement, and communication between cells are functions of the cytoskeleton, plasma membrane, and cell wall. Fimbriae Ribosomes Nucleoid Plasma membrane Cell wall Bacterial chromosome A typical rod-shaped bacterium Capsule Flagella A TEM of the bacterium Bacillus coagulans Origin of cell diversity Mitochondria and chloroplasts have – DNA and – ribosomes. The structure of this DNA and these ribosomes is very similar to that found in prokaryotic cells. The Endosymbiont theory proposes that – mitochondria and chloroplasts were formerly small prokaryotes and – they began living within larger cells. Mitochondrion Nucleus Endoplasmic reticulum Some cells Engulfing of oxygenusing prokaryote Engulfing of photosynthetic prokaryote Chloroplast Host cell Mitochondrion Host cell Section 2 THE PLASMA MEMBRANE The small size of cells relates to the need to exchange materials across the plasma membrane As the cell size increases, the surface area to volume ratio decreases. Therefore, in order to build larger organisms, they must be built up from small cell subunits. Function of the plasma membrane – Homeostasis is the process that responsible of maintaining balance in an organism’s internal environment – Plasma membrane is primarily responsible for homeostasis – The plasma membrane allows nutrients into the cell and allows waste and other products leave the cell – All prokaryotic and eukaryotic cells have a plasma membrane to separate them from the watery environments in which they exist Function of the plasma membrane – Plasma membrane key property is selective permeability (allows some substances to pass through while keeping other out) Structure of the plasma membrane Most molecules in the plasma membrane are lipids, Lipids are large molecules made up of glycerol and fatty acids The plasma membrane is composed of a Phospholipid bilayer – hydrophilic heads (polar) face outward, exposed to water, and – hydrophobic tails point inward (non-polar), shielded from water. Figure 4.2B Outside cell Hydrophilic heads Hydrophobic region of a protein Hydrophobic tails Phospholipid Hydrophilic region of a protein Inside cell Channel protein Proteins Other components of the plasma membrane Membrane proteins are either – attached to the membrane surface or – embedded in the phospholipid bilayer. Some proteins form channels or tunnels that shield ions and other hydrophilic molecules as they pass through the hydrophobic center of the membrane (Transport proteins). Other proteins serve as pumps, using energy to actively transport molecules into or out of the cell. Fluid mosaic model The fluid mosaic model refers to a plasma membrane with substances that can move around within the membrane - Phospholipids can move sideways within the membrane - Proteins also move among the phospholipids - Because there are different substances in the plasma membrane a pattern or mosaic is created on the surface Section 3 STRUCTURES AND ORGANELLES Cytoplasm and Cytoskeleton Cytoplasm - A semifluid material inside the plasma membrane - In a prokaryotic cell: all of the chemical processes of the cell such as breaking down sugar to generate energy take place in the cytoplasm - Eukaryotic cells perform these processes within organelles in the cytoplasm Cytoplasm and Cytoskeleton Cytoskeleton Cells contain a network of protein fibers, called the cytoskeleton, which functions in structural support and cell movement The cytoskeleton is composed of two kinds of fibers. 1. Microfilaments (actin filaments) support the cell’s shape and are involved in motility.(The thinnest fiber) 2. Microtubules (made of tubulin) are long, hollow protein cylinders that form a rigid skeleton for the cell and assist in moving substances within the cell. (The thickest filaments) Cell structures Ribosomes - Produce proteins (protein synthesis) - Are made of two components RNA and protein - Not bound by a membrane like other organelles are - Nucleolus is the site of ribosome production - Some Ribosomes float freely in the cytoplasm(produce proteins for use within cytoplasm) - Others are bound to another organelle called the Endoplasmic Reticulum (RER) They produce proteins that will be bound within membranes or used by other cells. Cell structures Organelles that carry out the genetic control of the cells Nucleus and Ribosomes The Nucleus - It controls the cell processes. - Is the cell’s managing structure - Contains most of the cell’s DNA which stores information used to make proteins for cell growth, function and reproduction © 2012 Pearson Education, Inc. Cell structures The Nucleus - Surrounded by a double membrane called the nuclear envelope has pores that allow material to flow in and out of the nucleus The nucleolus is – a prominent structure in the nucleus and – the site of (ribosomes) ribosomal RNA (rRNA) synthesis © 2012 Pearson Education, Inc. Cell structure Endoplasmic reticulum - A membrane system of folded sacs and interconnected channels that serve as the site of protein and lipid synthesis There are two kinds of endoplasmic reticulum— smooth and rough. – Smooth ER do not have ribosomes attached. – Rough ER have ribosomes attached on the outer surface of their membranes. Cell structure Smooth ER is involved in a variety of diverse metabolic processes. – Smooth ER produces enzymes important in the synthesis of lipids, oils, phospholipids, and steroids. – Other enzymes help process drugs, alcohol, and other potentially harmful substances. – Some smooth ER helps store calcium ions. – Smooth ER in the liver detoxifies harmful substances Rough ER makes – additional membrane for itself and – proteins destined for secretions. Cell structure The Golgi apparatus serves as a molecular warehouse and finishing factory for products manufactured by the ER. – Products travel in transport vesicles from the ER to the Golgi apparatus. – One side of the Golgi apparatus functions as a receiving dock for the product and the other as a shipping dock. – Products are modified as they go from one side of the Golgi apparatus to the other and travel in vesicles to other sites. “Receiving” side of Golgi apparatus Golgi apparatus 1 Transport vesicle from ER 2 Transport vesicle from the Golgi 3 4 4 “Shipping” side of Golgi apparatus Golgi apparatus Organelles That Build Proteins 1. Proteins are assembled on ribosomes. 2. Some proteins complete their assembly on the rough endoplasmic reticulum. 3. Proteins are carried to the Golgi apparatus in vesicles. Organelles That Build Proteins 5. Vesicles are shipped to their final destination. 4. The Golgi apparatus sorts and packages proteins. Cell structure Vacuoles - membrane-bound organelle - Temporary storage of materials within the cytoplasm - A plant vacuole is a sac used to store food, enzymes and other materials needed by a cell - Some vacuoles store waste products - Animal cells usually have no vacuoles , but if they do, these vacuoles are much smaller than those in plant cell Cell structure A lysosome is a membranous sac containing digestive enzymes. – The enzymes and membrane are produced by the ER and transferred to the Golgi apparatus for processing. – The membrane serves to safely isolate these potent (IMPORTANT)enzymes from the rest of the cell. Lysosomes help digest food particles engulfed by a cell. 1. A food vacuole binds with a lysosome. 2. The enzymes in the lysosome digest the food. 3. The nutrients are then released into the cell. Digestive enzymes Lysosome Digestion Food vacuole Plasma membrane Cell structure Lysosomes also help remove or recycle damaged parts of a cell. 1. The damaged organelle is first enclosed in a membrane vesicle. 2. Then a lysosome – fuses with the vesicle, – dismantles its contents, and – breaks down the damaged organelle. Lysosome Digestion Vesicle containing damaged mitochondrion Cell structure Centrioles - Made up of microtubules - Function during cell division - Located in the cytoplasm of animal cells - Plants do not have centrioles Cell structure Mitochondria are organelles that carry out cellular respiration in nearly all eukaryotic cells. Cellular respiration converts the chemical energy in foods to chemical energy in ATP (Adenosine triphosphate). Highly active cells such as muscle cells can have hundreds of mitochondria Cells that are not active such as fat-storage cells have few mitochondria Mitochondria has its own DNA. Cell structure Mitochondria have two internal compartments. 1. The intermembrane space is the narrow region between the inner and outer membranes. 2. The mitochondrial matrix contains – the mitochondrial DNA, – ribosomes, and – many enzymes that catalyze some of the reactions of cellular respiration. Mitochondrion Outer membrane Intermembrane space Inner membrane Cristae Matrix Cell structure Chloroplasts are the photosynthesizing organelles of all photosynthesizing eukaryotes. Photosynthesis is the conversion of light energy from the sun to the chemical energy of sugar molecules. Chloroplasts are partitioned into compartments. – Between the outer and inner membrane is a thin intermembrane space. – Inside the inner membrane is – a thick fluid called stroma that contains the chloroplast DNA, ribosomes, and many enzymes and – a network of interconnected sacs called thylakoids. – In some regions, thylakoids are stacked like poker chips. Each stack is called a granum, where green chlorophyll molecules trap solar energy Inner and outer membranes Granum Chloroplast Stroma Thylakoid Cell structure Cilia and flagella - Cilia are short, numerous projections that look like hair - The motion of cilia is similar to the motion of oars in a rowboat - Flagella are longer and less numerous than cilia - These projection move with a whiplike motion Cilia 4.17 Cilia and flagella move when microtubules bend Both flagella and cilia are made of microtubules wrapped in an extension of the plasma membrane. A ring of nine microtubule doublets surrounds a central pair of microtubules. This arrangement is – called the 9 + 2 pattern and – anchored in a basal body with nine microtubule triplets arranged in a ring. Outer microtubule doublet Central microtubules Radial spoke Dynein proteins Plasma membrane Cell structure A plant cell, but not an animal cell, has a rigid cell wall that – protects and provides skeletal support that helps keep the plant upright against gravity and – is primarily composed of cellulose. Plant cells have cell junctions called plasmodesmata that serve in communication between cells. Figure 4.21 Plant cell walls Vacuole Plasmodesmata Primary cell wall Secondary cell wall Plasma membrane Cytoplasm