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Health ■ New Diseases – Phenomena Developing into Problems ■ Virulece Mechanisms ■ The Fish Immune System Atle Lillehaug1) and Aud Skrudland2) 1) National Veterinary Institute, 2) Norwegian Food Safety Authority New Diseases – Phenomena Developing into Problems Overall losses in fish farming include mortality, escape, predation and sorting out of fish at slaughter, in addition to other unregistered demise of fish. These losses represent substantial reductions in profit. The overall proportion of fish lost has been quite stable during the last 15 years. In salmonids, it is assumed that “new” diseases are a major cause of losses, including pancreas disease (PD), heart and skeletal muscle inflammation (HSMI), cardiomyopathy syndrome (CMS), epiteliocystis / proliferative gill inflammation (PGI), and disease caused by Parvicapsula pseudobranchiola. In marine fish aquaculture, bacteria such as Vibrio anguillarum and Aeromonas salmonicida create problems, as does infection with nodavirus. Parasites such as “the Scottish louse” (Caligus elongatus) and other lice (Caligus curtus, Argulus sp.), as well as gill worms, flagellates, ciliates, microsporidiae, nematodes, and different gyrodactylus species, can turn problematic for marine fish production. 156 Aquaculture Research: From Cage to Consumption Measures for fish health The state of fish health in Norwegian aquaculture is considered substantially improved during recent years, compared to the situation in the late 1980s and the early 1990s. One yardstick for demonstrating an improved health situation is the consumption of antibacterial drugs in fish. The number of outbreaks of ISA is another health parameter used. Using losses of fish as a measure, statistics from Kontali Analyse AS illustrate that after a reduction in overall losses during the early 1990s, the percentages of lost fish have been quite constant or slightly increasing, as can be seen in Figure 1. A great proportion of both governmental and private research funding for aquaculture purposes has been applied in the area of fish health and closely related topics. However, this effort has not resulted in a reduction of losses. There are no statistics describing the different causes of overall losses. The organisation of the aquaculture industry in big companies may lead to more secrecy relating to the causes of losses, and fear of negative reactions from the market may contribute to reduced openness in health problems. Some diseases must be reported in accordance with Norway’s Food Safety Act, and all outbreaks should be registered. Phenomena developing into problems One can assume that a predominant cause of losses is “new” diseases such as CMS, HSMI, PD, etc. These disease conditions seem to have gained increased importance in recent years, developing from phenomena into problems, and they will be described in more detail in this chapter. In general, most infections causing disease outbreaks under aquaculture conditions develop from rare phenomena in wild fish. This has been the case for major bacterial infections, such as vibriosis and furunculosis. But “new” diseases have also been discovered in farmed fish, such as coldwater vibriosis, IPN and ISA, which have never been described in wild fish. These infections do, in all probability, also have reservoirs in wild stocks of fish or other feral organisms. In aquaculture, a great number of individuals are Overall losses in Norwegian Atlantic salmon production 1986–2005, Loss % expressed as per cent of total number of fish per generation 40 % 35 % 30 % 25 % 20 % 15 % 10 % 5% 0% 86G 87G 88G 89G 90G 91G 92G 93G 94G 95G 96G 97G 98G 99G 00G 01G 02G 03G 145x100//Kap09-fig01.eps Figure 1. The graph shows the progression of losses calculated per generation of Atlantic salmon from 86G to 03G in the period 1986–2005. The figures represent percentages lost from the total number of smolt put to sea. 92G designates fish put to sea in the calendar year 1992, minus the number of fish of that generation slaughtered. Loss includes mortality, escape, predation, culled fish at slaughter, and any unrecorded losses. Thematic area: Health 157 concentrated in a limited volume of water, and the conditions may be optimal for infectious agents to flourish and spread. The examples already mentioned have been thoroughly described earlier, and will not be dealt with in this chapter. Vibrio infections and furunculosis in salmonids are effectively controlled by use of vaccines, resulting in limited use of antibiotics in Norwegian fish farming for many years. However, the number of prescriptions for antibacterials now seems to be increasing; these are mainly associated with the cultivation of cod larvae. Hence, in this context, we can observe that new infections, and, moreover, new variants of well-known disease agents, may develop from phenomena into problems. Pancreas disease (PD) Pancreas disease is a viral disease first described in Scotland by Munro et al. (1984). Later, PD has been reported in North America, and the disease is particularly significant in Ireland. In Norway, PD has been present as a disease problem since the second half of the 1980s (Poppe et al. 1989), with a geographic localisation in the county of Hordaland and the southern parts of Sogn og Fjordane. Today, PD is probably one of the diseases inflicting the greatest losses to the salmo- 145x100//Kap09-fig02.eps Figure 2. Atlantic salmon surviving an outbreak of pancreas disease may suffer from reduced growth and have poor quality at slaughter. The two fishes are from the same population. (Photo: T.T. Poppe) 158 Aquaculture Research: From Cage to Consumption nid fish farming industry in the western parts of Norway. In 2003, the first outbreaks were reported in Troms and Finnmark, probably as a result of spreading from the western parts of the country with infected smolt. From 2002 to 2005, the number of farms experiencing outbreaks per year has increased from 12 to 35. In 2004, 44 outbreaks were reported, and the same year the disease has spread to the counties of Nordland and Rogaland. Pancreas disease affects both Atlantic salmon and rainbow trout in the seawater phase; usually outbreaks occur half a year or more after the fish have been transferred to sea. A typical disease outbreak has chronic characteristics with symptoms including loss of appetite and low mortalities, but a long duration of an outbreak may result in high overall mortality numbers. Losses of several hundreds of tonnes of fish have been reported in one single farm location. Moreover, surviving fish may have reduced growth rate, and fish slaughtered after an outbreak may have reduced meat quality due to muscle damage. The development of the disease first results in necroses in pancreas, caused by the virus, which has given rise to the name of the condition. Next, damage develops in the heart muscle, and later even in skeletal muscle. In Norway, pathological changes have even been seen in the kidney and spleen late in the course of the disease. Diagnostic examinations for PD should be done on fish showing clinical signs of disease (Taksdal et al., manuscript). Post mortem may demonstrate mucous intestinal contents, caused by anorexia, and signs of circulatory disturbances may be seen, such as oedema in scale pockets, protruding eyes and liquid contents in the abdominal cavity. Petechial haemorrhages in the adipose tissue surrounding pancreas may be found. Early in the course of the disease, typical acute changes in pancreas may be found in histological sections, and positive immunohistochemical staining for the PD virus may be demonstrated. Next, inflammatory cells and tissue damage can be found in the heart muscle, and later in skeletal muscle. It has been difficult to isolate the PD virus in cell culture. However, the methods have been improved. Moreover, the virus can be detected by use of PCR. Demonstration of specific anti-PD virus antibodies in fish blood is crucial in the diagnosis of pancreas disease, but such tests can only be employed some time after the infection has been established. Antibodies may be detected for a long time after infection, and may be used to find out if a fish population has been infected with the PD virus. Causality Three different but closely related PD viruses have been described. Salmon pancreas disease virus (SPDV) is the cause of PD in Atlantic salmon in Scotland and Ireland (Nelson et al. 1995). Hodneland et al. (2005) describe a Norwegian strain called salmonid alphavirus (NSAV) causing disease both in Atlantic salmon and rainbow trout. A third variant of the virus gives rise to “sleeping disease” in rainbow trout in fresh water in Europe (Welsh et al. 2000). It has been suggested to unite the three types in a species named “Salmonid alphavirus”. Experience indicates that PD contamination is connected to specific locations, such that outbreaks often reappear when fish are transferred to sea at a site where the disease has been seen earlier. Spread of the infection to new areas seems to be connected to movements of infected fish. A vaccine against pancreas disease is being tested. Current topics for further research Studies which have contributed to create knowledge on PD, including the development of diagnostic methods, have been carried out in cooperation between research institutions in Norway, Ireland and Scotland (Taksdal et al. manuscript). The cooperation is being continued in new research projects aimed at elucidating the geographical distribution of the pertinent virus types, and identifying risk factors for acquiring infection and for disease outbreaks, as well as further characterisation of virus isolates and validation of diagnostic methods. 145x100//Kap09-fig03.eps Figure 3. Fish suffering from heart and skeletal muscle inflammation. The heart is visibly paler than normal. (Photo: T. Taksdal) Thematic area: Health 159 145x100//Kap09-fig04.eps Figure 4. The histological section to the left shows normal, red skeletal muscle, and to the right is a section of muscle from an Atlantic salmon with heart and skeletal muscle inflammation. The muscle is infiltrated with inflammatory cells, and many of the muscle cells shrink and degenerate. (Photo: R.T. Kongtorp) Heart and skeletal muscle inflammation (HSMI) HSMI was found for the first time during routine diagnostic investigations of farmed Atlantic salmon in 1999; the disease has since created increasing problems for the Norwegian aquaculture industry. Most of the outbreaks are occurring in Central Norway, but HSMI is reported in most fish farming coastal areas (Kongtorp et al. 2004a). No cases have been confirmed outside Norway, but outbreaks have been suspected in Scotland (Ferguson et al. 2005). HSMI affects Atlantic salmon in seawater. Outbreaks usually occur between five and nine months after sea transfer of the smolt, and body weights are usually below 1.5 kg (Kongtorp et al. 2004a). Results from field studies and challenge trials indicate that close to 100 per cent of the individuals in a farm can be affected, although not all fish show obvious symptoms (Kongtorp et al. 2004b; Kongtorp et al. 2006). During an HSMI outbreak, lethargic fish and increased mortality may be observed for one to six months. Mortality numbers vary from almost negligible to nearly 160 Aquaculture Research: From Cage to Consumption 20 per cent in some pens. Stressing of the fish seems to result in increased mortality (Kongtorp et al. 2004a). Results of a study of the development of a disease outbreak indicate that HSMI can act as a sub-clinical inflammation in the heart several months prior to the onset of increased mortalities in the farm, and heart injuries may be observed for a long period after mortality numbers have normalised (Kongtorp et al. 2006). The diagnosis is based on clinical signs, including increased mortality and increasing numbers of lethargic individuals, together with observations during autopsy and histopathology. Typical findings are coagulated blood in the pericardium, pale and flabby heart, liquid contents in the abdominal cavity, yellowish or spotted liver with a fibrinous veil covering the capsule, tiny haemorrhages in the liver parenchyma, and a swollen spleen (Kongtorp et al. 2004a). Histological characteristics of HSMI include severe inflammation and necroses in the heart and in the red skeletal muscle. In the heart ventricle, all layers are involved. Usually, an extensive infiltration of inflammatory cells is observed in the epicardium, together with inflammation and necroses in both the compact and spongy layers of the heart muscle. The atrium is usually less affected, and in bulbus arteriosus (a pear-shaped expansion of the first part of the aorta, made up of elastic tissue) no inflammation has been observed in connection with HSMI. There are inflammatory reactions and necroses in red skeletal muscle, but the white muscle is rarely affected. Necroses may be found in the liver, probably as a result of impaired blood circulation. Some individuals even have oedematous stretches in the spleen, and other organs may show different levels of circulation disturbances (Kongtorp et al. 2004a). Causality Challenge trials have demonstrated that the disease can be transmitted both by intraperitoneal injection of heart tissue homogenate from sick fish, as well as by cohabitation with injected fish (Kongtorp et al. 2004b). A viral cause of HSMI is suspected. However, isolation and characterisation of an etiological agent has not been published yet. Due to the contagious characteristics of HSMI, it is important to prevent further spread of the disease by measures such as disinfection of equipment and fallowing of contaminated sites between fish generations. Due to the high infection rate in affected populations, together with a prolonged course of the disease, any transfer of fish during the seawater phase will involve a risk of spread of the disease. This is also the case for the introduction of new populations to sites already inhabited by salmon. Current topics for further research A study of the inflammatory reactions in fish with HSMI is in progress, aiming at an improved understanding of the development of the disease. Figure 5. Atlantic salmon dead from cardiomyopathy syndrome. Coagulated blood can be observed in the pericardium, causing a so-called heart tamponade. (Photo: T.T. Poppe) 145x100//Kap09-fig05.eps Important aims for future research will be to identify the etiological agent and to develop diagnostic tools in order to improve the sensitivity and specificity of the diagnosis. It is also crucial to develop further competence regarding pathogenesis, applying pathological and microbiological studies. An epidemiological project is necessary in order to map geographic distribution and spread of disease, together with risk factors for acquiring the disease. Such knowledge is basic for the implementation of control measures and eradication strategies for HSMI. Cardiomyopathy syndrome (CMS) Cardiomyopathy syndrome is a serious heart condition, mainly causing disease in farmed Atlantic salmon late in the seawater phase, when the fish is approaching slaughter 14–18 months after sea transfer. At this time, the monetary value of the fish is greatest. CMS was first observed in Norway in 1985 (Amin & Trasti 1988). Later, it has been diagnosed in Scotland (Rodger & Turnbull 2000) and on the Faeroe Islands, and there have been suspected cases in Canada (Brocklebank & Raverty 2002). Similar Thematic area: Health 161 disease conditions have been observed in wild salmon as well (Poppe & Seierstad 2003). In Norway, CMS occurs along the entire coastline, but is most prevalent in Central Norway. The disease is rare in the counties of Troms and Finnmark (Østvik & Kjerstad 2003). There has been an increase in the annual number of diagnosed outbreaks, from 25 in 1998 to 101 in 2002 (Brun et al. 2003), and statistics from diagnostic work at the National Veterinary Institute demonstrate a lasting high prevalence in recent years. A clinical outbreak can last from one to six months, even longer. Typically, an outbreak arises more than one year after sea transfer (mean: 400 days), at a fish body weight of 2–3 kg. According to a study by Østvik & Kjerstad (2003), mean total mortality during an outbreak was six per cent. In most cases, only some of the net pens in a farm were affected by the disease outbreak. Still, up to 80 per cent of the total losses in affected farms were caused by CMS. The course of the disease can go in one of two directions: either sudden onset of mortalities in a population of apparently healthy fish (Skrudland et al. 2002), or moderately increased mortalities over several months (Brun et al. 2003). During a prolonged course of the disease, abnormal swimming movements and anorexia may be observed prior to deaths. Due to the high value of each fish dying from CMS, the economic losses may be significant (Brun et al. 2003; Østvik & Kjerstad 2003). Losses may be limited by avoiding stresses such as sorting and moving of fish, delousing or other handling, when CMS is suspected or diagnosed in the farm. Emergency slaughtering may contribute to the limitation of losses (Skrudland et al. 2002). Autopsy of fish dying from CMS will typically reveal haemorrhages in the skin, and protruding scales and eyeballs. Fluid contents in the abdominal cavity and fibrinous coverings on the liver surface can be seen. In the heart, the atrium and the adjacent great veins are usually dilated and enlarged, and the pericardium may contain blood coagula (Bruno & Poppe 1996). Sometimes, the wall of the atrium may have ruptured (Amin & Trasti 1988). The pathological changes described may also be studied in live, anaesthetised fish by use of ultrasound examinations. In histological sections, CMS may be characterised by inflammatory reactions and degenerations in the spongy layers of the heart muscle (Ferguson et al. 1990). Studies have documented that the pathological changes develop over several months, and in early stages the changes are de- 145x100//Kap09-fig06.eps Figure 6. The histological section to the left shows a normal gill filament, and to the right is a filament with proliferative gill inflammation. Thickened lamellae with infiltrations of inflammatory cells can be seen. (Photo: A. Kvellestad) 162 Aquaculture Research: From Cage to Consumption marcated. However, gradually the changes become generally distributed, and the inflammatory reactions and necroses in the muscular cells may weaken the wall of the atrium and lead to a rupture. Necroses may be observed even in the liver (Ferguson et al. 1990). In other organs, e.g. the gills and spleen, congestion of blood can be seen, probably as a consequence of a general circulatory failure (Amin & Trasti 1988). Causality An infection hypothesis of CMS is based on the findings of inflammatory reactions and necroses in the heart muscle. Other theories have been launched, relating to malnutrition, auto immune reactions or environmental influences. However, alternative causal relations (other than an infectious agent) have received little attention in research projects. As early as in the first description of the condition, Amin & Trasti (1988) suggested a viral aetiology, based on the detection of inclusion bodies in muscle cells adjacent to damaged cells. Later studies, however, have not succeeded in cultivating any virus or in demonstrating viral particles by use of electron microscopy (Rogder & Turnbull 2000; Ferguson et al. 1990). Still, Grotmol et al. (1997) reported the detection of nodaviruslike particles in heart muscle of fish suffering from CMS, both by use of immunohistochemistry against nodavirus, as well as by demonstrating virus-like particles 25 nm in size with electron microscopy. It could not be concluded, however, that the virus particles were the cause of the disease, and similar findings have not been reported from other outbreaks of CMS. Transmission of the disease by injection of cellfree material based on heart, liver and kidney tissue from sick fish has been reported (Watanabe et al. 1995; Nylund 2001), supporting a theory of viral aetiology. In an epidemiological study, Brun et al. (2003) found a connection between outbreaks of CMS and earlier cases of infectious pancreas necrosis (IPN) in the same farm. Inflammation of the heart muscle is also found in connection with “erythrocytic inclusion body syndrome” (EIBS) (Rodger & Richards 1998). Recently, it was reported that a variant of the PD virus, Norwegian salmonid alphavirus, had been isolated from CMS fish (Hodneland et al. 2005). It is not known whether this was merely a coincidental finding. Current topics for further research There are many unanswered questions related to CMS, particularly connected to the aetiology, the elucidation of the pathogenesis, and the mapping of risk factors. An approach to these problems can include observing groups of fish during the entire seawater phase – preferably even during outbreaks of CMS – and making clinical records and taking samples in order to study pathological changes and examine for microorganisms. Detection of microorganisms should be followed by characterisation studies and challenge trials, in order to try to reproduce the disease condition. Possible connections between CMS and other diseases, including IPN, should be studied further, and other risk factors should be identified in epidemiological studies. Based on the results of pathological and microbiological studies, better diagnostic tools should be developed. Epitheliocystis / proliferative gill inflammation (PGI) Comprehensive gill problems in Atlantic salmon, resulting in impaired growth and significant mortalities, have been observed to varying degrees along the entire coast since the 1980s. Some fish health services do report increasing Thematic area: Health 163 problems in recent years (Myklebust & Holm 2005). Outbreaks typically occur the first autumn in seawater, a few months after sea transfer. Mortalities may vary from negligible to more than 20 per cent. Even higher mortality numbers have been reported in some outbreaks (Myklebust & Holm 2005). In addition, there are losses due to reduced growth in survivors. Fish suffering from such gill problems may also be more vulnerable to other disorders. Hence, the overall economic impact of the disease is substantial. So far, diagnosis of PGI has mainly been based on clinical symptoms and histological findings, the latter revealing intracellular accumulations of rickettsia- or clamydia-like organisms, termed “epitheliocysts” in the gills. These formations give rise to the term “epitheliocystis” for this condition. Typical findings in histology from gills are inflammation and increased numbers of surface cells; in recent years the disease has been called “proliferative gill inflammation” (PGI). So far, it has not been possible to cultivate the microorganisms in question, so challenge experiments have not been possible. Based on molecular characterisations of the organism, a new species has been suggested: Candidatus pisciclamydia salmonis (Draghi et al. 2004). A paramyxovirus has been isolated from the gills of sick post-smolt, Atlantic salmon paramyxovirus (ASPV) (Kvellestad et al. 2003), and the virus has been detected in fish suffering from clinical outbreaks in the field (Kvellestad et al. 2005). However, it has not been possible to reproduce the disease in challenge trials (Fridell et al. 2004). Therefore, the etiology for PGI is not fully elucidated, but the pathogenesis probably includes an interaction between clamydia, ASPV and unfavourable environmental conditions (Holm et al. 2005). 164 Aquaculture Research: From Cage to Consumption No effective treatment has been identified for PGI. Bathing in different solutions has been tested, as well as antibiotics added to feed, but no evident effect has been demonstrated (Myklebust & Holm 2005). The Research Council of Norway is supporting two ongoing projects aimed at identifying risk factors for outbreaks of PGI and developing diagnostics for the disease condition. Parvicapsula pseudobranchiola During the spring and early summer of 2002, disease outbreaks in Atlantic salmon were recorded in five sea farms in Northern Norway (Karlsbakk et al. 2002; Sterud et al. 2003). Mortality numbers in the farms varied from three to 50 per cent. A single-celled parasite, Parvicapsula pseudobranchiola, was found to be the cause of deaths. The diagnosis was based on histology. The parasite is a myxosporidium, and the life cycle probably includes a switch between Atlantic salmon (intermediate host) and an invertebrate (end host). There is no known treatment for the disease. Disease caused by Parvicapsula has previously been reported in salmon in North America (Jones et al. 2004). The discovery of a new parasite in Norway attracted considerable attention, particularly in relation to a possible risk for important wild stocks of Atlantic salmon. During 2003, the parasite was found in more than 30 fish farming sites from the county of Møre og Romsdal in Central Norway, and northwards. In 2004, the parasite was even found in Sunnhordaland. The findings in 2002 resulted in the employment of new routines for histological investigations of diagnostic material. The increased numbers of identifications of Parvicapsula in recent years should be interpreted in this context. 145x100//Kap09-fig07.eps Figure 7. Vibrio anguillarum-isolates from Atlantic cod examined for antibiotic resistance. The plates from left to right show a resistant, an intermediate and a sensitive isolate, respectively. (Photo: D.J. Colquhoun) The Research Council of Norway has funded a project to build up knowledge regarding the parasite, its spread, life cycle and ability to cause disease. Such knowledge will be important in order to evaluate different preventive measures. Bacterial infections in marine fish Great effort goes into developing the cultivation of marine fish species as an aquaculture industry. Production is increasing, particularly for Atlantic cod, and even for halibut. The range of diseases is reminiscent of what was seen in salmonids during the 1980s and early 1990s: bacterial infections are dominating these relatively early phases of developing production of marine fishes. In 2005, a new bacterial species was found and isolated from cod with granulomatous formations in different organs. The bacterium belongs to the genus Francisella (Olsen et al. 2006), and the disease is already of concern for the cod farming industry. Vibriosis Globally, vibriosis is probably the most common systemic bacterial infection in farmed fish. The disease is caused by the Gram-negative bacterium usually known as Vibrio anguillarum. The species has been reclassified in the genus Listonella (MacDonald & Colwell 1985), but its taxonomic transfer from genus Vibrio has not been fully recognised (Austin et al. 1995) and is still a subject of discussion (Thompson et al. 2004). Vibriosis has caused sporadic mortalities in feral fish, but the disease is primarily a problem under marine aquaculture conditions in temperate zones, including fish farming in brackish water. Outbreaks are most common during relatively high water temperatures in summer. Sørensen & Thematic area: Health 165 Larsen (1986) originally suggested 10 different serovariants of the bacterium. In addition, a number of sub-groups have been identified (Rasmussen 1987; Bolinches et al. 1990; Tiainen et al. 1997). Vibriosis in cod in Norway is caused solely by V. anguillarum serovars O2α and O2β, the latter being dominating. Vibriosis is the most important bacterial infection in the production of cod fry in Norway, and the majority of prescriptions of antibiotics for cod fry are against this disease. Vibriosis has also been seen in coalfish. The pathological findings usually include ulcers and haemorrhages in the skin, particularly in the head region, and at the bases of the fins. With a more chronic disease course, bloodshot, protruding eyeballs may be seen. Losses due to vibriosis can be limited by vaccination. While the vaccines used today are without adjuvants, and do not offer full protection against disease, experiments with adjuvanted injection vaccines have shown promising results (Mikkelsen et al. 2004). These vaccines cannot, however, be applied to small fishes. Results from experiments with fry have demonstrated better protection of fish of two grams weight, compared to those vaccinated at one gram weight. Fish vaccinated at five grams are protected for at least six months (Schrøder et al. 2006). Vibrio bacteria are usually sensitive to antibiotics, and oxolonic acid is usually the drug of choice. However, resistant isolates have been identified (Colquhoun et al. 2005). Ongoing studies (Colquhoun, underway) indicate that Norwegian V. anguillarum O2β are quite homogenous, while there are greater variations between O2α isolates. These differences may be of importance for the design of vibriosis vaccines intended for cod. Studies are underway 166 Aquaculture Research: From Cage to Consumption of genetic differences between isolates of V. anguillarum O2α and O2β from different European countries. Their results will hopefully provide important knowledge of the population structure of V. anguillarum. Further research should aim at improved vaccines on the one hand, and at the optimisation of fry cultivation systems on the other, in order to reduce the infection pressure. Aeromonas salmonicida A. salmonicida can cause serious systemic infections in many fish species around the world. The bacterial species can be divided into five subspecies, but in connection with fish diseases, isolates are categorised into two main groups; subspecies salmonicida, and “atypical” isolates. Isolates causing disease outbreaks in farmed marine species usually belong to the atypical group (Bergh et al. 2001; Lund et al. 2002; Gudmundsdóttir et al. 2003), but infections caused by subsp. salmonicida do occur as well. In Norwegian aquaculture, A. salmonicida causes problems primarily in halibut, Atlantic cod, wolffish and turbot. Typical external symptoms are seen as skin lesions, including ulcers (Wiklund & Dalsgaard 1998). Acute mortality can be observed, but more common is a moderately increased level of mortalities over time. Fish may be covertly infected with the bacterium, showing no signs of disease. One may expect that an increase in the farming of marine fish species in the North Atlantic region can be followed by problems with different variants of A. salmonicida. The reservoir for infection is supposed to be infected fish, wild or in farms. Outbreaks are probably activated by stressors such as high fish densities, handling of fish, or poor water quality. Losses during an outbreak may be reduced by keeping proper routines. Treatment with antibi- otics is usually effective, but the disease may reappear after some time, and A. salmonicida has the ability to quite frequently develop strains showing multi-resistance against several antibiotics (L’abée-Lund & Sørum 2001). Vaccination against atypical furunculosis in marine fish species has not offered protection comparable to that achieved against furunculosis in salmonids. Levels of protection seem to vary with the bacterial strain causing disease (Lund et al. 2003), and differences in the bacterial surface A-layer protein seem to be of importance. Variation in the A-layer reflected in DNA of the isolates is a promising epidemiological marker for virulence (Colquhoun, underway). Ongoing research activities are to a great extent focusing on selection of isolates for vaccine development as well as epidemiological typing systems based on molecular biological characteristics. 145x100//Kap09-fig08.eps Figure 8. Cod louse (Caligus curtus) situated on the skin of an Atlantic cod. (Photo: T.T. Poppe) VER (Johansen et al. 2004b). However, the virus was somewhat different from the one causing disease in halibut. Disease is also reported in cod, the virus being quite similar to the halibut virus (Starkey et al. 2001). Nodavirus Nodavirus is the cause of viral encephalopathy and retinopathy (VER) in halibut fry (Grotmol et al. 1997; Grotmol et al. 1999). The disease caused substantial losses throughout the 1990s, but in more recent years, reported outbreaks have been few. It can be assumed that general hygienic management procedures implemented in the farming of halibut have had a positive effect. Infection of larger fish does not seem to cause disease (Grove et al. 2002); however, they can become carriers of the virus. Although they show no obvious symptoms, growth rate may be affected (Johansen et al. 2004a). The virus may be transmitted to spotted wolffish, resulting in a disease condition resembling that seen in halibut (Johansen et al. 2003; Sommer et al. 2004). A nodavirus has been isolated from turbot, as well, in connection with a disease outbreak similar to Methods for cultivating the virus in cell culture have been established (Dannevig et al. 2000) and antibodies have been produced and are being utilised in immunohistochemistry (Johansen et al. 2002). An ELISA to monitor the immune response in fish has been established (Grove et al. 2003), and PCR methods have been developed for the detection of virus (Grotmol et al. 2000; Grove et al. 2003). Experimental vaccines have been designed and tested in turbot, and a vaccine based on a recombinant capsid protein gave protection (Sommerset et al. 2005). Further studies concerning the pathogenesis of VER are needed, as is the development of better diagnostic tools. Parasites in marine fish When a fish species is kept in monoculture for farming purposes, the conditions are ideal for the Thematic area: Health 167 multiplication of parasites, particularly for species which do not need intermediate hosts. The parasites get access to a great number of hosts living in high population densities, compared to wild populations. Therefore, it is of great importance to know which parasite species may be found in wild stocks of the same fish species, and to follow the development of parasites burdening farmed fish. The multiplication of parasites in aquaculture may also affect wild fish, due to increased infection pressure. The “Scottish louse”, Caligus elongatus, constitutes a particular challenge; this louse can be a parasite on many different fish species, including Atlantic salmon, Atlantic cod (Karlsbakk et al. 2001), and halibut. In a research project, lice sampled from different fish species are compared in order to reveal any differences in morphology, genetic material or specific preferences for different fish species. There are even other “lice” in cod, such as Caligus curtus, which attack only 168 Aquaculture Research: From Cage to Consumption cod, and the “fish louse”, genus Argulus (Schram et al. 2005). All these species are parasitic crustaceans. Other parasites in cod include the gill worm (Lernaeocera branchialis, copepod) (Lysne & Skorping 2002), the flagellate Spironucleus torosa in the intestine, and the microsporidium Pleistophora gadi in the muscle. Several ciliates (e.g. Trichodina), flagellates (e.g. Ichthyobodo) and myxosporidia (e.g. Pleistophora) can infest different marine fish species, such as cod, halibut and wolffish. The nematodes include species such as Anisakis and Pseudoterranova, giving rise to intermediate stages of the worm in muscle and other organ systems (Hemmingsen & MacKenzie 2001), and they may cause health problems in humans (zoonoses). Monogenean ectoparasites also need investigating, including various species of gyrodactylus, which may cause problems in farmed cod. References Amin AB, Trasti J. Endomyocarditis in Atlantic salmon in Norwegian seafarms. Bulletin of the European Association of Fish Pathologists 1988; 8(4):70−71. Austin B, Alsina M, Austin DA, Blanch AR, Grimont F, Grimont PAD, Jofre J, Koblavi S, Larsen JL, Pedersen K, Tiainen T, Verdonck L, Swings J. Identification and typing of Vibrio anguillarum: a comparison of different methods. Systematic Applied Microbiology 1995; 18:285−302. Bergh Ø, Nilsen F, Samuelsen OB. Diseases, prophylaxis and treatment of the Atlantic halibut Hippoglossus hippoglossus: a review. Diseases of Aquatic Organisms 2001; 48:57−74. Bolinches J, Lemos ML, Fouz B, Cambra M, Larsen JL, Toranzo AE. Serological relationships among Vibrio anguillarum strains. Journal of Aquatic Animal Health 1990; 2:21−29. Brocklebank J, Raverty S. Sudden mortality caused by cardiac deformities following seining of preharvest farmed Atlantic salmon (Salmo salar) and by cardiomyopathy of postintraperitoneally vaccinated Atlantic salmon parr in British Columbia. Canadian Veterinary Journal 2002; 43:129−130. Brun E, Poppe TT, Skrudland A, Jarp J. 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(in Norwegian) Thematic area: Health 171 Øystein Evensen1), Nina Santi1), Ann-Inger Sommer2) and Siri Mjaaland1) 1) Norwegian School of Veterinary Science, 2) Fiskeriforskning (Norwegian Institute of Fisheries and Aquaculture Research) Virulence Mechanisms Virulence is the ability of infectious agents to cause disease in the infected animal. This is a trait that has developed over millions of years in close interaction between the host and the agent. The relationship that has developed over millions of years of co-existence has resulted in a situation where there is on one side a balance between the agent’s ability to spread within a susceptible population and on the other side the outcome of an infection both at the level of the individual and the host. Rapid viral replication and spread within the host will result in severe damage to internal organs and rapid death, which will limit the ability of the agent to spread and survive within the population. It is anticipated that agents will trade off virulence for persistence and less-efficient spreading mechanisms in lower vertebrates as well as mammals. This chapter will describe characteristics of two fish viruses and present results from recent years’ research into infectious pancreatic necrosis virus (IPNV) and infectious salmon anaemia virus (ISAV). For the IPN virus, a good understanding has been gained of the association between a strain’s amino acid residues at defined positions in the VP2 protein and the virulence of the strain, defining a virulence signature. Similarly, defined mutations in the same amino acid residues can easily be associated with loss of virulence. For the ISA virus it has been shown there are large variations in some of the surface molecules between strains, although it has not been possible to associate these differences with virulence traits. It has also been shown that viral proteins can counteract the defence mechanisms of the host. 172 Aquaculture Research: From Cage to Consumption Definitions Viral replication Virulence is used as a term to describe the relative pathogenicity of the relative ability (capacity) of the agent to cause tissue damage/ disease. While virulence traits in bacteria are often associated with different toxins and the level at which they are produced, virulence in viruses is often less well defined. This chapter will focus on virulence traits of viruses for the reason that it has been the main topic of the Aquaculture programme for this reporting period. In no way does this mean that the virulence traits of fish pathogenic bacteria are all known and well described. Many factors contribute to the overall pathogenicity of a virus, such as the host cell entry mechanisms, replication capacity, ability to counteract or resist the defence mechanisms of the cell, and the ability to cause temporary or permanent damage to the host through cell lysis, production of toxic substances, cell transformation, and production of antiviral substances by the infected cell in response to an infection. In addition, induction of structural changes in the cell nucleus and the cytoplasm are observed. A virus can infect the host through damaged skin or an insect bite (in fish it has been proposed that the salmon louse – Lepeophteirus salmonis – can act as a carrier and vector of infectious agents). However, in both lower and higher vertebrates the mucosal surfaces are considered a prime port of entry of pathogens; because of this, pathogenic viruses have developed the ability to exist in company with the normal flora, both viruses and bacteria. Replication of a virus can occur in the mucosal lining, i.e. this site is the primary port of infection (as seen for koi herpes virus) but more often the mucosal lining is the port of entry of systemic infection. The speed at which replication takes place plays a key role in determining virulence. Fast replication will frequently be associated with disease symptoms and clinical disease. The ability of the virus to replicate in vivo will depend on the ability of the virus to replicate under the conditions “provided” by the infected cell plus the extent to which the virus can resist the defence mechanisms of the cell aimed at preventing replication and eliminating the virus. A fine-tuned balance has developed over years of co-existence and relates to different stages of an infection: cell adherence, penetration, release of the virus particle to the inner compartment of the cell, access to energy, synthesis of components of importance during early stage of replication, synthesis of virus proteins and genome replication, and assembly and release from the cell. Tissue damage A successful infection will often result in cell lysis, typical of cytolytic viruses. Typically, membrane integrity is lost, followed by leakage of enzymes and cell damage. Apoptosis is another classical cellular response to a virus infection and because of this many viruses have developed strategies whereby they counteract the induction of apoptosis. Virus proteins interact at different levels of the apoptosis “machinery” and the details are largely unknown for many viruses; the consequence to the host cells is a delay in the onset of apoptosis, which allows the virus to produce more progeny before the cell machinery shuts down. Non-cytolytic viruses, on the other hand, will often cause cell damage through immunological defence mechanisms, typically through an expression of capsid or membrane components of the virus being expressed in the cell membrane of the infected cell. Antibodies in combination with Thematic area: Health 173 complement can result in cytolysis while cytotoxic T cells can induce cell lysis through direct interaction. An important virulence trait of many viruses is the ability to circumvent the immune responses of the host. Different viruses have developed different strategies; inhibition of presentation of virus proteins via MHC molecules is one, yet another is the ability of the virus to mutate single amino acids in immunodominant virus proteins. Cellular effects A virus infection can have toxic effects on the infected cells. Examples are formation of syncytia, fusion of chromosomes (polykaryocytosis) and so on. Virus infections can also result in cell transformation (pre-cancerous stages) and suppression of immune responses as inhibition of interferon responses. Cytoplasmic and nuclear inclusion bodies are structural cell changes observed in association with virus infections. In the ensuing paragraphs you will find a presentation of virulence mechanisms of infectious pancreatic necrosis virus and infectious salmon anaemia virus. IPNV is a small virus, 60 nm in diameter with an icosahedral symmetry in the capsid (Figure 1). The genome consists of two double-stranded RNA molecules which encode five virus proteins (VP1–5). VP2 and possibly VP5 carry virulence traits. VP2 is exposed on the virus surface and is important for the binding to and uptake in target cells. The VP2 protein also carries serotype specific and neutralising epitopes. VP5 can promote the ability of the virus to replicate and it has been shown that certain strains of IPN virus have an anti-apoptotic effect. 174 Aquaculture Research: From Cage to Consumption 145x100//Kap10-fig01.eps Figure 1. Electron micrograph of IPN virus (negative staining; Trygve Eliassen). Methods relevant to studies of viral virulence mechanisms Both biotechnological methods and fish challenge studies are important tools when investigating the virulence mechanisms of IPNV. It has been known for a while that some strains cause higher mortality, and that passage in cell culture can alter the virulence characteristics of the virus. Virulence differences among virus stains can be revealed through experimental challenge of salmonid fish. A number of factors influence the mortality caused by IPN, both in field outbreaks and under experimental conditions. Accordingly, virulence comparison of IPNV strains must be coordinated, and performed in a controlled environment to attain credible results. All conditions, such as the number of fish, virus dose, challenge time, temperature, tanks, and water flow, must be equal for all experimental groups. By challenging susceptible rainbow trout fry, early investigators detected virulence differences among IPNV strains of 145x100//Kap10-fig01.eps Figure 2. The reverse genetics technique for production of recombinant IPN virus. First, a CDNA copy of the viral genome is cloned into a plasmid vector. In front of the genomic sequences is a short sequence recognised by a RNA polymerase (T7). This enables in vitro synthesis of RNA copies of viral genomic segments A and B. When this copy RNA is transfected into a susceptible cell culture, new viral proteins and genomic segments are made, and later assembled into new viral particles. Mutations introduced in the cDNA copy of the viral genome will be expressed as alteration in the proteins of the new, recombinant virus isolate. the same serotype, and mapped virulence traits to RNA-segment A. Sequencing and subsequent comparisons of the viral genomes of different IPNV strains can reveal differences and lead to identification of molecular motifs involved in virulence. However, the strains may differ in more than one way, making it hard to decide which motif is most significant for the virulence traits of the virus. The reverse genetics technique can be applied to gain a more detailed map of the virulence markers (Figure. 2). By this technique it is pos- sible to alter the viral proteins by introducing specific mutations of the viral genome. It is, for instance, possible to change one amino acid residue of a highly virulent strain to match the corresponding amino acid of a low virulent strain. The resulting recombinant viral strain can be further tested to confirm the role of this residue as a virulence marker. The reverse genetics technique provides a unique tool for studies of the viral life cycle, viral assembly, the role of viral proteins in pathogenicity, and the interplay of viral protein with components of the host’s immune response. A reverse genetics technique has been developed for the IPN virus as well. Thematic area: Health 175 Identified virulence mechanisms of the IPN virus When Atlantic salmon fry are challenged with different field strains of IPNV, great variation in the pathogenicity of the isolates is displayed. Some of the strains cause high mortality and severe lesions in the pancreas and liver of infected fish, while other strains cause low mortality and no detectable tissue damage. The same strains cause varying mortality in experimental challenge of Atlantic salmon post-smolt as well. The virulence was also tested after 10 passages in cell culture. From these studies, several molecular motifs associated with IPNV virulence were identified. Four amino acid residues of the capsid protein VP2, as well as the size of the non-structural protein VP5, appeared to be important. These motifs have since been subject to further studies to attain detailed knowledge of their individual influence on the pathogenicity of the virus. The reverse genetics technique has been used to study the effect of VP5 on IPNV virulence. Recombinant viruses coding for different size variants of the VP5 protein have been made, as well as a VP5 knock-out mutant. Challenge studies of both Atlantic salmon fry and postsmolt did not reveal any differences in the virulence of the VP5 variant strains. Additional studies have demonstrated that VP5 is not essential for viral persistence. A cell protective function (anti-apoptotic) has been recorded for the VP5 protein of an Asian IPNV strain. This anti-apoptotic effect was not found in cell culture or in fish infected with the recombinant strains studied. Taken together, these results oppose a role of VP5 as a virulence factor of Norwegian IPNV strains. 176 Aquaculture Research: From Cage to Consumption The significance of the individual VP2 amino acids was also investigated using the reverse genetics technique. These studies pinpoint VP2 residues 217 and 221 as the major virulence determinants of Norwegian IPNV isolates. Highly virulent strains encode Thr217 and Ala221, while moderate to low virulent strains have Pro217 and Ala221. Strains with Thr at residue 221 are almost avirulent, irrespective of the amino acid in position 217. The molecular basis for cell culture attenuation was realised by detection of an Ala-Thr substitution at residue 221 after a few passages of the virus in cell culture. The cell culture adapted strains are strongly attenuated and almost avirulent in experimental challenge of Atlantic salmon fry. A single mutation at VP2 residue 221 can be detected after 10 passages in cell culture. The resulting mutated strain has significantly reduced virulence, causing very low mortality as compared to the original strain. The three-dimensional structure of VP2 of IBDV was recently determined. IBDV is a birnavirus causing infectious bursitis in chicken. From the IBDV VP2 crystal structure it can be predicted that the amino acids 217 and 221 of IPNV are exposed at the viral surface. Their exposed orientation combined with the marked effect on virulence may suggest that residues 217 and 221 are engaged directly with receptors of the host cell. Further investigations are necessary to decide if this is the case. Field studies In a field study of IPN including 20 different fish farms with post-smolt vaccinated against IPN, an accumulated mortality varying from one to 45 per cent was registered three to nine weeks after transfer to seawater. There might be different reasons for the large variation in mor- tality. One possibility was that salmon from different localities was infected with IPN viruses of varying virulence, and IPN virus isolates from these outbreaks were therefore sequenced. Most of them showed the motif of the four amino acids in VP2 consistent with a highly virulent strain, while only a few of the field strains were equal to the variants of moderate virulence. One field strain was interesting because it contained only two of the four “markers of high virulence”, Thr217 and Ala221, but nevertheless was characterised as highly virulent in a challenge test. Again this indicated that the two amino acids in position 217 and 221 are the most important ones for virulence in related IPN virus strains. All genetic characterisations of the field isolates as highly or moderately virulent were confirmed when the strains were tested in challenge experiments under equal conditions. Several trials have shown that nonvaccinated post-smolt challenged with strains of high virulence usually results in 40–70 per cent accumulated mortality and zero to 35 per cent using strains of moderate to low virulence. The mortality also seems to vary with the susceptibility to IPN in the families of Atlantic salmon used. There is obviously a lack of correspondence between mortality registered out in the field and in controlled challenge experiments. This reflects that many factors, besides the quality of the IPN virus itself, have an impact on the result of an infection. It should be mentioned, though, that no low virulent virus strain was isolated from any of the IPN outbreaks. Results from all the studies together show that the same virulence factors are important for development of IPN both in Atlantic salmon fry and post-smolt. Whether this applies to other fish species susceptible to IPN is still to be investigated. Carrier conditions, reactivation of the IPN virus and virulence Because the IPN virus is very common in Norwegian fish farms, primary infections may occur after transfer of the salmon to the sea. Nevertheless, there is reason to believe that reactivation of a persistent IPN virus infection could be responsible for a great part of the outbreaks. Increased resistance to IPN in new generations of farmed Atlantic salmon may also represent a genetic pressure allowing more virulent IPN viruses to be carried asymptomatically in the fish. For instance, the N1 strain of IPNV previously isolated from most of the outbreaks of IPN in salmon fry and from virus carriers is now characterised as a low virulent strain. Experimental challenge and knowledge about the virulence of the IPN virus strains are also used to ascertain the significance of virulence in the establishment of a carrier condition, and in reactivation of IPN as well. Experimental carriers of the IPN virus were established under equal conditions by bath challenge in freshwater, using both a highly virulent and a low virulent strain. The highly virulent strain was reactivated after smoltification and transfer to seawater, which resulted in an IPN outbreak. The accumulated mortality was comparable to that observed after challenge of post-smolt salmon with the same strain in seawater. This occurred even if the virus at some time points in the freshwater phase was not detectable in cell culture using a traditional carrier test. This type of IPN virus was isolated from more than ¾ of all collected field strains, but it is not known whether the salmon was infected in seawater or Thematic area: Health 177 already carried the virus in the early freshwater phase. The mechanisms behind an IPN virus carrier condition are not known. Studies have shown that the mutations that happen during passages in cell cultures and result in a change from Alanine to Threonine in position 221 in VP2 may explain a reduced virulence, which seems to coincide with the establishment of a persistent infection. Virulence mechanisms for the ISA virus ISA virus The ISA virus is an aquatic orthomyxovirus (genus: Isavirus), belonging to the same family as the influenza A virus causing disease in birds and mammals. The virus is enveloped, 80–120 nm in size (Figure 3), with surface projections performing hemagglutination (receptor-binding), receptor-destroying (viral release) and fusion (virus entry into the cell) activity. The genome consists of eight single-stranded RNA molecules with negative polarity, encoding at least 10 proteins, where nine are known to be present in the mature virus particle. The largest genomic segments (segments 1, 2 and 4) encode the viral polymerases, while segment 3 encodes the viral nucleoprotein. Segments 5 and 6 encode the two surface glycoproteins, i.e. the fusion protein (F) and the hemagglutininesterase (HE). The HE is responsible for receptorbinding and -release, while the F protein enables the entrance of viral nucleic acids into the cell. The two smallest genomic segments encode two proteins each. The largest open reading frame (ORF1) of segment 7 encodes a non-structural protein (NS), a putative interferon antagonist, while the function of the structural ORF2 protein remains to be characterised. The matrix (M) protein is encoded by the ORF1 178 Aquaculture Research: From Cage to Consumption of segment 8, while the larger ORF2 encodes an RNA-binding structural protein with putative interferon antagonistic activity. The ISA disease picture is complex, as observed by large differences in disease development and clinical signs. Typically, an ISA outbreak may initially appear as diffuse, unspecific disease problems and variable mortality over long time periods, before finally cumulating into an outbreak, while acute disease outbreaks occur more seldom. Virulence is influenced by a) the genetic constitution of the fish, b) the genetic constitution of the virus isolate, and c) environmental circumstances. Possible virulence mechanisms The study of ISA virus genes and gene product is still in its infancy, and there are at present major gaps in our knowledge around the mechanisms behind ISA virus virulence. It was not until 2002, for instance, that all the genes had been sequenced, and not until 2005 that the total sequence of one isolate (Glesvaer 2/90), including the non-coding 3’- and 5’-terminal viral RNA sequences, was completed. This last work was initiated as the first step in the establishment of a reverse genetics system on ISAV (see below). Current knowledge of virulence is based on results from experimental trials, sequence analyses of viral genes, and functional studies on cloned recombinant viral proteins. In orthomyxoviruses, reassortment of gene segments occurs frequently and is a major contributor to the evolution of these viruses and the emergence of new virulent strains. Extensive molecular and phylogenetic sequence analyses of 14 full-length sequences of Norwegian ISA virus isolates together with a parallel study on the two surface glycoproteins provide strong evidence for the occurrence of genetic reassortment involving several ISAV gene segments. Moreover, properties like receptor-binding and -release, fusion and interferon antagonism, which are all important factors of virulence for influenza virus, have also been identified for the ISA virus. However, it is still not known to what extent variations in these activities influence the outcome of an ISA virus infection. ISA virus HE protein Cloning and early characterisation of the hemagglutinin-esterase (HE) gene was published in 2001. It was soon realised that HE is the ISA virus protein with the overall highest sequence variation, concentrated in a small highly polymorphic region (HPR) near the transmembrane region. This region is characterised by the presence of gaps rather than single-nucleotide substitutions. Alignments and analyses of a large number of HE gene sequences suggested that the polymorphism in this region could arise from differential deletions of a theoretical full- 145x100//Kap10-fig01.eps Figure 3. Electron micrograph of ISA virus particles (Ellen length precursor gene (HPR0) as a result of strong functional selection pressure, possibly,due to a newly or ongoing crossing of species barrier, or as a results of changes in ecological conditions related to fish farming. So far, the number of different HPR groups is 25 in Europe and four in North America. The pattern of variation is constrained to the 35 amino acids defined as the HPR. The presence of a long HPR0 gene has been confirmed by RT-PCR of tissue samples from healthy wild and farmed Atlantic salmon. HPR0 is therefore assumed to represent a lowpathogenic /avirulent virus. The main reservoir for the ISA virus is today believed to be wild salmonids (brown trout and Atlantic salmon) and the farmed salmon itself. HPR/HPR0 All viruses isolated from ISA-diseased fish so far contain deletions in the HPR region. It is therefore assumed that deletions in the HPR are a prerequisite for disease development, and that the HPR most likely represents an important virulence marker. In fact, this is so far the only genetic marker associated more or less directly with virulence in the ISA virus. The virulence of the ISA virus cannot, however, be attributed to the HE-HPR alone, as isolates with identical HPR vary in virulence in experimental infections using standardised experimental fish. Virus-host interactions Experimental trials have been designed to study the interactions between the ISA virus and the salmon host in detail, with emphasis on disease susceptibility and immune responses. To reduce the effect of host genes, half-siblings identical in MHC class I and II genes were used as experimental fish. The ISA virus isolates were selected according to a) variation in their HE- Namork). Thematic area: Health 179 145x100//Kap10-fig01.eps Figure 4. Reverse genetics on the ISA virus. A. The bidirectional transcription system. Viral cDNA is oriented in a positive direction to the RNA polymerase II promoter (pII) and poly adenylation site (aII), and a negative orientation to the RNA polymerase I promoter (pI) and termination sequence (tI). In this way both viral mRNA (positive-stranded) and viral vRNA (negative-stranded) may be produced from the same construct following transfection into susceptible cells. B. Total viral RNA sequence of each of the eight ISA virus genomic segments is converted to cDNA and placed in separate plasmid vectors. The eight plasmids are co-transfected into fish cells (ASK or TO) and recombinant ISA virus synthesised. C. Detailed description of plasmid-based replication of recombinant ISA virus. 180 Aquaculture Research: From Cage to Consumption HPR region and b) the isolates’ differences in virulence in field outbreaks. The mortality induced after cohabitant challenge ranged from zero to 47 per cent in the test-group fish, and three to 75 per cent in the injected cohabitants. The use of MHC compatible experimental fish made it possible – for the first time – to estimate the relative importance of humoral versus cellular responses in protection against the ISA virus. Most interestingly, the ability to induce a strong proliferative response correlated with survival, while induction of a humoral response in itself was less protective. The differences in induced immune responses could not be ascribed to the variation in the HE-HPR alone, as two isolates with identical HE-HPR induced opposite immune responses and hence survival. ISA virus biobank material Due to the lack of a reverse genetics system for this virus at the time, detailed sequence- and phylogenetic analyses were the methods of choice in the search for additional virulence traits. The 14 ISA virus isolates described above were therefore cloned and full-length sequenced. Following extended amino acid sequence analyses coupled to data on virulence, candidate genes and areas of genes of importance in ISAV virulence have been suggested (see below). For final proof, however, a reverse genetics system is needed. ISA virus F protein The fusion activity is associated with uptake of a virus into the cell during infection, and changes in this protein may thus have important implications for the virulence of an isolate. Most interestingly, when aligning all available fusion gene sequences (segment 5), a 30-nucleotidelong insertion was found in several virus isolates, immediately upstream of the protein’s pu- tative cleavage site. More detailed analyses revealed extensive sequence homology in this region. This, together with the fact that exactly the same recombination occurred in two unrelated ISA virus isolates, suggests the presence of a recombinational hot spot. Hypothetically, this could lead to alterations in the cleavage specificity of the fusion protein, with potential changes in tissue or organ tropism, analogous to avian influenza A virus HA of the subtypes H5 and H7, where sequential insertion of several basic amino acid residues at the HA1/HA2 proteolytic cleavage site leads to systemic infection and multi-organ failure in poultry. ISA virus interferon antagonists Induction of type I interferon responses represents an important first-line defence against viral infections. Many viruses have developed strategies to counteract this response. For the influenza viruses, this is accomplished by a non-structural protein with RNA-binding properties. The ISA virus, on the other hand, produces two proteins potentially interfering with the cells’ interferon response: a non-structural protein without RNA-binding properties, and a small RNA-binding structural protein. The two related virus groups may therefore seem to use different strategies to achieve the same goal: to inhibit the cells’ defence against viral infection. The detailed mechanisms behind the ISA virus interferon antagonism have not yet been characterised. Reverse genetics on the ISA virus Reverse genetics is the optimal tool for studying virulence mechanisms and virus-host interactions. The method also has great potential in future productions of vaccines against the ISA virus. For several positive-stranded RNA viruses (such as the IPN virus) this technology has already been established and been in use for Thematic area: Health 181 several years. However, in contrast to positivestranded RNA molecules, negative-stranded RNA molecules (vRNA; as the ISA virus) are not infectious. By including expression of functional viral RNA polymerases and ribonucleoprotein complexes, synthetic vRNA segments can be converted to an infectious virus from full-length cDNA. A plasmid-based expression system is used, similar to the one developed for the influenza A virus, where viral cDNA from each of the genomic segments are placed between a RNA polymerase I promoter and terminator sequence, flanked by a RNA polymerase II promoter and polyadenylation site. The orientation of the two transcription units allows synthesis of negative-stranded vRNA and posi- 182 Aquaculture Research: From Cage to Consumption tive-stranded mRNA from each cDNA template (Figure 4). The total vRNA sequences from all eight of the ISA virus genomic segments have been mapped and cDNA cloned into the pol I/II vector pHW2000, and the work towards producing viable artificial viral particles is promising. After successful isolation of recombinant viral particles, mutations will be introduced into candidate genes. The molecular analyses of the above mentioned biobank material will help to define relevant genes and areas of genes. The effects of the mutations will be tested in vitro (infection of cell cultures) and in vivo (experimental trials). References Brun, E., 2003. Epidemiology. In: Evensen Ø, Rimstad E, Stagg R, Brun E, Midtlyng P, Skjerstad B, Johansen LH, Jensen I (eds): IPN in salmonids; a review. Trondheim, FHL and VESO, pp 51−67. Coulibaly, F., Chevalier, C., Gutsche, I., Pous, J., Navaza, J., Bressanelli, S., Delmas, B., Rey, F.A., 2005. The birnavirus crystal structure reveals structural relationships among icosahedral viruses. Cell 120, 761−772. Cunningham, C.O., Gregory, A., Black, J., Simpson, I., Raynard, R.S., 2002. A novel variant of infectious salmon anaemia virus (ISAV) haemagglutinin gene suggests mechanisms for virus diversity Bull. Eur. Ass. Fish Pathol. 22, 366−374 Devold, M., Karlsen, M., Nylund, A., 2006. Sequence analysis of the fusion protein gene from infectious salmon anemia virus isolates: evidence of recombination and reassortment. J.Gen.Virol. 87, 2031– 2040 Dorson, M., Castric, J., Torchy, C., 1978. Infectious pancreatic necrosis virus of salmonids: biological and antigenic features of a pathogenic and of a nonpathogenic variant selected in RTG-2 cells. J. Fish Dis. 1, 309−320. Garcia-Rosado, E., Markussen, T., Mjaaland, S., Bækkevold,E., Rimstad, E., 2007. The un-spliced mRNA of infectious salmon anemia virus genomic segment 7 encodes a non-structural interferon antagonist (submitted) Hoffmann, E., Webster, R.G., 2000. Unidirectional RNA polymerase I-polymerase II transcription system for the generation of influenza A virus from eight plasmids. J. Gen. Virol. 81, 2843−2847 Hoffmann, E., Neumann, G., Kawaoka, Y., Hobom, G., Webster, R.G., 2000. A DNA transfection system for generation of influenza A virus from eight plasmids. Proc. Natl. Acad. Sci. USA, 97(11), 6108− 6113 Krossoy, B., Devold, M., Sanders, L., Knappskog, P.M., Aspehaug, V., Falk, K., Nylund, A., Koumans, S., Endresen, C., Biering, E., 2001. Cloning and identification of the infectious salmon anaemiavirus haemagglutinin. J. Gen. Virol. 82, 1757−1765. Lyngstad, T.M., Brun, E., Jansen, P.A., Heier, B.T., 2005. Sammendrag av epidemiologiske rapporter om utbrudd av ILA i Norge 2004. Rapport til Mattilsynet fra Veterinærinstituttet. pp 1−36. Markussen, T.,Jonassen, C.M., Numanovic, S., Braaen, S. & Mjaaland, S. 2007. Evolutionary mechanisms of infectious salmon anaemia virus (ISAV): fulllength sequence analyses of 14 isolates diverging in virulence (submitted) Melby, H.P., Christie, K.E., 1994. Antigenic analysis of reference strains and Norwegian field strains of aquatic birnaviruses by the use of 6 monoclonal antibodies produced against the infectious pancreatic necrosis virus N1 strain. J. Fish Dis. 17(4), 409−415. Mjaaland, S., Hungnes, O., Teig, A., Dannevig, B.H., Thorud, K., Rimstad, E., 2002. Polymorphism in the infectious salmon anemia virus hemagglutinin gene: importance and possible implications for evolution and ecology of infectious salmon anemia disease. Virology 304, 379−391 Mjaaland, S., Markussen, T., Sindre, H., Kjoglum, S., Dannevig, B.H., Larsen, S., Grimholt, U., 2005. Susceptibility and immune responses following experimental infection of MHC compatible Atlantic salmon (Salmo salar L.) with different infectious salmon anaemia virus isolates. Arch Virol. 150, 2195−2216. Nylund, A., Devold, M., Plarre, H.. Isdal, E., Aarseth, M., 2003. Emergence and maintenance of infectious salmon anaemia virus (ISAV) in Europe: a new hypothesis Dis. Aquat. Organ. 56, 11−24. Plarre,H., Devold, M., Snow, M., Nylund, A., 2005. Prevalence of infectious salmon anaemia virus (ISAV) in wild salmonids in western Norway. Dis. Aquat. Org. 66, 71−79. Raynard, R.S., Murray, A.G., Gregory, A., 2001. Infectious salmon anaemia virus in wild fish from Scotland. Dis. Aquat. Organ. 46(2), 93−100. Rimstad, E., Mjaaland, S., Snow, M., Mikalsen, A.B., Cunningham, C., 2001. Characterization of the infectious salmon anemia virus genomic segment that encodes the putative hemagglutinin. J. Virol. 75 (11), 5352−5356. Roberts, R.J., McKnight, I.J., 1976. The pathology of infectious pancreatic necrosis. II. Stress-mediated recurrence. Br. Vet. J. 132, 209−214. Sano, T., 1971. Studies on viral diseases of Japanese fishes. II. Infectious pancreatic necrosis of rainbow trout: pathogenicity of isolates. Bull. Jap. Soc. Sci. Fish 37, 499−503. Sano, M., Okamoto, N., Fukuda, H., Saneyoshi, M., Sano, T., 1992. Virulence of infectious pancreatic necrosis virus is associated with the larger RNA segment (RNA segment A). J. Fish Dis. 15, 283− 293. Santi, N., Sandtrø, A., Sindre, H., Song, H., Hong, J.R., Thu, B., Wu, J.L., Vakharia, V.N., Evensen, Ø., 2005. Infectious pancreatic necrosis virus induces apoptosis in vitro and in vivo independent of VP5. Virology 342, 13−25 Thematic area: Health 183 Santi, N., Song, H., Vakharia, V.N., Evensen, Ø., 2005b. Infectious pancreatic necrosis virus VP5 is dispensable for virulence and persistence. J. Virol. 79, 9206−9216. Santi, N., Vakharia, V.N., Evensen, Ø., 2004. Identification of putative motifs involved in the virulence of infectious pancreatic necrosis virus. Virology 322, 31−40. Sommer, A.-I., Knappskog, D., Rødseth, O.-M., 1998. Ny smittemodell for IPN – et viktig bidrag i kampen mot sykdommen. Norsk Fiskeoppdrett nr. 18, 30− 32. Sommer, A-I., 2004. Studier av virulensfaktorer hos norske feltisolater av IPN-virus. Fact sheet, Final Report, Project 1 418 877/120. Research Council of Norway’s website: www.forskningsradet.no/ havbruk 184 Aquaculture Research: From Cage to Consumption Song, H., Santi, N., Evensen, Ø., Vakharia, V.N., 2005. Molecular determinants of infectious pancreatic necrosis virus virulence and cell culture adaptation. J. Virol. 79, 10 289−10 299. Stangeland K. et al. 1996. Experimental induction of infectious pancreatic necrosis in Atlantic salmon, Salmo salar L., post-smolts. J. Fish Dis. 19, 323− 327. Taksdal et al. 1998. Induction of infectious oancreatic necrosis (IPN) in covertly infected Atlantic salmon, Salmo salar L., post-smolts by stress exposure, by injection of IPN virus (IPNV) and by cohabitation. J. Fish Dis. 21, 193−204. Vestergård Jørgensen, P.E., Kehlet, N.P., 1971. Infectious pancreatic necrosis (IPN) viruses in Danish rainbow trout. Nord. Vet.-Med. 23, 568−575. Yao, K., Vakharia, V.N., 1998. Generation of infectious pancreatic necrosis virus from cloned cDNA. J. Virol. 72, 8913−8920. Børre Robertsen1), Ivar Hordvik2) and Trond Jørgensen1) 1) Norwegian College of Fishery Science, University of Tromsø 2) University of Bergen The Fish Immune System Why do Atlantic salmon smolts develop infectious pancreatic necrosis (IPN) when released into the sea? Why are viral vaccines less efficient than bacterial vaccines in salmon? Why does infectious salmon anaemia virus (ISA-virus) kill Atlantic salmon, but not trout? These are some of the questions that occupy fish immunology researchers. It is the immune status of the fish, which determines whether the fish develops disease after contact with an infectious microorganism. Molecular and functional studies of the fish immune system are thus very important to understand why fish get sick and how fish vaccines can be developed to work optimally. The defence against microorganisms of vertebrates consists of the innate and the adaptive immune system. The innate immune system is comprised of cells and mechanisms that defend the host from infection by microorganisms, in a non-specific manner. This means that the cells of the innate system recognize and respond to molecules that are structurally conserved in viruses, bacteria or fungi. The innate immune defence is active only for a short period of time and may also be deceived by many pathogens. In contrast, the adaptive immune system is activated later during the infection and is directed specifically against the invader. Moreover, the adaptive immune defence is more effective, possesses memory and thus has a longer duration than the innate immune defence. The main executing cells of the adaptive immune system are B and T lymphocytes. B cells are the origin of antibodies whereas T cells kill virus infected cells and stimulate macrophages to kill intracellular bacteria. The goal of vaccination is to activate the adaptive immune system. Increased knowledge about the fish immune systems may be used to improve fish vaccines and to develop better methods for measuring the immune/health status of the fish. Such methods may be used to reveal conditions that predispose the fish for infections. Thematic area: Health 185 Atlantic salmon is one of the most important model species for obtaining new knowledge about the fish immune system and many of the key genes involved have now been cloned and sequenced. Research on the cod immune system has also made good progress. The Aquaculture Program of the Research Council of Norway has contributed with significant funding in this field, which has resulted in increased knowledge and competence in fish immunology. During the Program period several projects have been devoted to studies of the antibody repertoire of salmon and cod and on the innate immunity against viruses of Atlantic salmon. These topics are thus the main focus of this chapter. Innate immunity against virus in fish Although viral diseases cause major losses of farmed Atlantic salmon, we tend to forget that fish like mammals, are normally quite resistant to viral infections. The fact is that vertebrates possess a powerful innate immune defence, which stops viral infections in an early phase. The reason why fish or humans sometimes develop disease due to virus infection may be that the innate defence is weakened by stress, poor nutrition, poor environmental conditions or because some very aggressive viruses are able to avoid or inhibit the defence mechanisms of the animal. Atlantic salmon is for example quite resistant to IPN except for the early stages after hatching and after release of the smolt into the sea. Different salmon strains also display a large variation in susceptibility to IPN-virus. Atlantic salmon thus has an innate immunity against IPN-virus that varies with inherited traits, ontogeny/age and living conditions. As described below Atlantic salmon appears to have poor innate immunity against ISA-virus. 186 Aquaculture Research: From Cage to Consumption The interferon system The interferon system plays a major role in the innate defence against viruses and recent research has shown that teleost fish have an interferon system, which is very similar to that of mammals [1]. Interferons (IFNs) are defined as proteins that induce an antiviral state in host cells. Virus infection activates the IFN system of the host cell because the cell recognizes viral nucleic acids [1, 2]. Henceforth, the infected cell produces IFN, which is an alarm protein that circulates in the body and tells other cells to start production of antiviral proteins (Figure 1). As a result the IFN system stops further invasion of the virus. The importance of the IFN system in the innate immunity against viruses in mammals is well documented. Mice that have defective genes in the IFN system are for example very susceptible to viral infection. The IFN system is likely to be equally important in the antiviral innate immunity of fish. The mechanisms used by host cells for recognizing viruses have recently been uncovered. This occurs by binding of viral single-stranded or doublestranded RNA to intracellular receptor proteins (RIG-I, MDA5, TLR3, TLR7, TLR8 or PKR). The synthetic dsRNA poly I:C is in fact a powerful inducer of the IFN system because it imitates a virus infection in vertebrate cells. Whereas the first IFN-genes from humans were cloned in 1980, the first IFN-genes from fish including Atlantic salmon were cloned in 2003 [1, 3]. The reason why it has taken such a long time to clone the first fish IFNs is that the sequence identity between IFNs from fish and mammals is very low. Similar to mammals, Atlantic salmon was shown to possess two types of IFN, type I IFN, which is involved in innate immunity and type II IFN, which is mainly involved in adaptive immunity. Type II IFN is identical to IFN-γ and will not be further discussed here. Humans Virus IFN IFN-receptor dsRNA receptor Antiviral proteins IFN IRE NF-kB IFN mRNA IFN gene Virus-infected cell ISRE mRNA IFN stimulated genes IFN-stimulated cell 145x100//Kap11-fig01.eps Figure 1. Role of interferon (IFN) in the defence against viruses. Upon infection by a virus, cytoplasmic receptor proteins recognize double-stranded RNA (dsRNA) produced during viral replication.. Binding of dsRNA to receptor protein produces signals that tell the nucleus to produce IFN mRNA. Accordingly the cell starts production of the alarm protein IFN, which is secreted and circulates in the blood stream. IFN binds to a receptor protein present on the surface of most cells and this starts a signalling process, which tells the cells to produce Mx, ISG15 and other antiviral proteins. As a result IFN protects cells against virus infection. The arrows indicate signals that are produced in the cell as a response to dsRNA and IFN. have many different subtypes of type I IFN (IFN-α, IFN-β, IFN-δ, IFN-ε, IFN-κ, IFNτ, IFN-ω and IFN-λ). Only three type I IFN subtypes have as yet been discovered in salmonids [3, and unpubl. results]. These are most similar to IFN-α from mammals. Salmon interferon protects host cells from IPN-virus infection Recombinant IFN-α1 from Atlantic salmon was produced by insertion of the cloned salmon IFN gene into cultured human cells [3]. The recombinant IFN was demonstrated to induce strong antiviral activity against IPNV in cultured Atlantic salmon cells (Figure 2). The test was performed by incubating salmon cells with serial dilutions of IFN for 24 hours after which the cells were infected with IPN-virus. When the control cells were killed by the virus after about 72 h, the cells were fixed and stained with crystal violet. Surviving cells become strongly stained by crystal violet whereas dead cells remain colourless. Thematic area: Health 187 Antiviral proteins are produced in salmon cells in response to dsRNA and IFN In human and mouse, IFN has been shown to induce transcription of several hundred genes some of which are encoding antiviral proteins [2]. Several IFN-induced genes have recently been identified in fish [2]. Mx protein is one of the most studied antiviral proteins and is known to inhibit replication of influenza virus and several other virus types. ISG15 is one of the proteins that is induced earliest and in the largest amounts in cells by IFN. It has the ability to conjugate to other cellular proteins and appears to be involved in antiviral mechanisms. Both Mx and ISG15 have been cloned from Atlantic salmon and were shown to be induced by IFN and dsRNA in live fish and/or cultured cells [4–7]. Mx protein of Atlantic salmon inhibits replication of IPN-virus Genetic engineering methods have enabled studies of the antiviral activity of Atlantic salmon Mx protein [8]. The gene encoding salmon Mx protein was inserted into a plasmid, which allows continuous expression of the protein in animal cells. The plasmid was introduced into salmon cells some of which incorporated the Mx gene in their chromosomes. Cells producing Mx protein continuously were subsequently selected and grown (Figure 3). These Mx producing salmon cells were infected with IPN-virus. Salmon cells, which had been gene manipulated/engineered to produce green fluorescent protein (GFP) were used as a negative controls. Three days after infection surviving cells in the different cultures were estimated by crystal violet staining. Figure 4 illustrates the 145x100//Kap11-fig02.eps Figure 2. Antiviral assay, which illustrates that recombinant Atlantic salmon IFN protects salmon TO cells against IPN virus infection. The picture shows wells with TO cells in a 96 well culture plate after staining with crystal violet. Non-treated cells or cells treated with different dilutions of recombinant salmon IFN were first incubated for 24 hours. Cells in wells labelled IPNV or IFN+IPNV were next infected with IPNV whereas wells labelled Uinf or IFN were not infected. Three days later the cells were fixed and stained with crystal violet. The colour intensity correlates with the number of living cells in the wells. 188 Aquaculture Research: From Cage to Consumption Figure 3. Expression of Mx protein in Chinook salmon embryo cells after staining with a specific antibody. ASMx1: Cells genetically manipulated to produce Atlantic salmon Mx protein continuously. IFN: Cells stimulated for 48 hours with IFN. Control: Non-treated cells. 145x100//Kap11-fig03.eps protection against IPN-virus obtained in the different cell types. Similar to IFN-treated cells, almost 100 % of the Mx-producing cells survived the virus infection whereas the control cells died. This demonstrates that Atlantic salmon Mx protein protects the cells from the damaging effects of IPN-virus and suggests that Mx protein is very important for the ability of salmon to resist IPN-virus infections. ISA-virus is not inhibited by the IFN system of salmon ISA-virus kills Atlantic salmon very efficiently in infection experiments. The aggressive nature of this virus may in part be explained by its ability to trick the IFN system of the fish. Neither IFN nor dsRNA was able to protect salmon cells against ISA-virus in spite of the fact that the cells contained large amounts of Mx protein [5, 9]. Moreover, the virus itself stimulates production of both Mx protein and ISG15 during infection of live salmon and salmon cells in vitro. These results indicate that ISA-virus either avoids or inhibits key antiviral proteins of the IFN system in salmon. The adaptive immune system in fish 145x100//Kap11-fig04.eps Figure 4. Effect of IPN virus infection on survival of salmon cells, which produce Mx protein continuously (ASMx1). IFN treated cells (IFN) were included as a positive control and non-treated cells (Control) were included as a negative control. The assay was carried out as described in Figure 2. Percent surviving cells three days after infection were calculated by measuring the light absorption at 550 nm Cells and central molecules The most important cells in the adaptive immune system are T cells and B cells (with their derived plasma cells responsible for antibody production). Antibodies recognise non-self structures on for example bacterial or viral surfaces while T cells recognise foreign structures on the surface of other host cells. These foreign structures might be parts of proteins that are digested by multi-protease complexes in a specific manner and bound to a family of molecules known as major histocompatibility complex after staining of cells with crystal violet. Thematic area: Health 189 T cell CD4+ T cell CD8+ T cell receptorcomplex CD8 T cell receptorcomplex CD4 MHC II MHC I Antigen presenting cell 145x100//Kap11-fig05.eps Figure 5. T cells recognize foreign non-self peptides displayed on other cells. The T cell receptor complex consists of a group of molecules indicated in blue. Nearly all cells in the body are capable of displaying internally derived peptides on their surfaces bound to MHC class I antigen (dark green). MHC class II antigens are expressed by many cells of the immune system (light green) and bind proteins endocytosed from their surroundings. Interactions between MHC class I and II antigens and T cells are supported by CD8 and CD4 co-receptors (violet and brown respectively) 190 (MHC) antigens. All cells constantly digest proteins, which may include non-self proteins if the cell is infected or has taken up foreign molecules. The peptides are loaded onto MHC antigens and presented on the cell surface. mune response in order to eradicate the foreign material. While MHC class I peptides are derived from intracellular proteins, MHC class II antigens display peptides that have been endocytosed from the extra-cellular environment. MHC antigens are extremely polymorphic, which means that the corresponding genes show higher individual variation than any other gene families. This polymorphism accounts for different capabilities displayed by individuals for the presentation of certain proteins. MHC antigens loaded with peptide are transported to the cell membrane where they are constantly monitored by circulating T cells. Detection of non-self proteins causes activation of the im- Genes that encode antibodies, T cell receptors and MHC antigens represent some of the most complex genes studied. In fish there is much to be done before these genes are characterised in detail, but already we can say there are molecular and functional similarities between teleosts and higher vertebrates [10–13]. The enzymes and mechanisms responsible for the generation of the almost infinite number of different antibodies and T cell receptors are also present in Aquaculture Research: From Cage to Consumption fish together with the machinery surrounding the MHC antigens. Thus many of the established characteristics of the mammalian immune system can be found in fish. Fish have three classes of immunoglobulin Antibody molecules are immunoglobulins composed of light and heavy glycoprotein chains. A typical monomer consists of two identical light chains and two identical heavy chains, the latter of which determines the class and characteristics of the immunoglobulin. The different classes can form monomers, dimers, trimers, tetramers, pentamers and even, hexamers. For a long time fish were considered to have a relatively simple immune system with only one class of immunoglobulin, IgM, whereas mammals have IgG, IgD, IgA and IgE in addition. However, a new immunoglobulin was cloned from channel catfish and named IgD in 1997. The name IgD was proposed due to its sequence similarity with mammalian IgD and to its gene localization i.e. adjacent to IgM. In addition IgD and IgM can be expressed simultaneously in the same cell, a unique property of IgD in mammals. Circulating IgD in the blood has only been found in channel catfish who express this soluble form of IgD from a gene remote from that coding for the membrane form albeit in the same gene complex. In other teleost fish only the membrane form of IgD transcripts has been reported [14, 15]. The function of IgD is still unknown in fish. Interestingly, a third class of immunoglobulin has recently been cloned from bony fish, designated IgT since it is found only in teleosts. IgT can be both membrane bound and soluble and is most similar to IgM [16, 17]. The role of IgT is also unknown at the present. Identification of immune genes in fish: a rapidly developing field. In addition to salmonids other species such as fugu, carp, Japanese flounder and zebrafish have been prominent in the study of fish immunology during recent years. Several large-scale sequencing projects have been initiated, providing a better basis for identification of immunerelated genes. Mapping of gene positions has also made it possible to find many previously unidentified genes by their comparative locations in the genome (so-called synteny analysis). Salmonids: a duplicate set of genes. Due to a tetraploid ancestry, many genes in salmonid fish have two very similar copies. In Atlantic salmon, for example, there are A and B sub-variants of IgM, IgD and (probably) IgT [18, 19]. The pseudo-tetraploid state of the genome in salmonid fish has been known for a long time, but the biologically consequences of this phenomenon are not, so far, known. It has been speculated that salmonid fish with their anadromous life cycle have benefited from their pseudo-tetraploidy to adapt more quickly to various environmental conditions. The cod immune system Atlantic cod has a unique position within the Norwegian fishing industry and the efforts in establishing cod as an aquaculture species will hopefully give this industry an extra dimension. Many see great potential in cod farming, but the road ahead is still long and several multi disciplinary research programs are needed before the domestication can be fulfilled in a scale comparable to Atlantic salmon. Thematic area: Health 191 Variable“domain”/sites IgM & IgD Constant domains, IgM & IgD IgD, cod IgD, salmon L-chain H-chain Active site IgM, cod and salmon Fc part B cell B cell B cell 145x100//Kap11-fig06.eps Figure 6. Comparison of IgM and IgD in salmon and cod. A research field that has received attention for some years are studies of the immune system in cod, or more precisely, the antibody dependant or humoral part of it. These studies started almost 20 years ago, and a finding that surprised the researchers was the relatively low amount of antibodies produced after immunisation of cod with various antigens. Compared to salmon, cod was clearly a non- or low-responder against both bacterial and model antigens, although serum concentrations of immunoglobulins in nonimmunised cod was approximately 10 times higher than in the Atlantic salmon [20, 21]. The reason for this “discrepancy” is not known in any detail but both regulatory and genetic issues have been discussed. A main issue has been to compare the antibody repertoire in cod with the one in salmon, hoping 192 Aquaculture Research: From Cage to Consumption that such studies could explain the species difference in antibody production [22]. The antibody genes are relatively complex, but have the same organisation “pattern” in vertebrates as divergent as fish and mammals. In short, the antibody gene cluster contains several gene segments (V, D, J and C) with individual genes that are combined in a complete transcript that is translated into the H- and L-chain of the antibody molecule. What makes these molecules special is that they possess so-called active sites (see figure 6) which bind to particular antigen structures / epitopes on the pathogens. In addition, the antibody “tail” or Fc part determines the functions or immune mechanisms involved during infection and eventually humoral immune protection. Immunoglobulin classes mammals IgM birds amphibians Class shift bony fish cartilaginous fish IgD IgG IgE IgA IgM IgG IgA IgM IgY IgX IgM IgD, IgT IgM NAR, NARC 145x100//Kap11-fig07.eps Figure 7. IgM is the predominant antibody class found in fish, amphibians, birds and mammals. In teleosts IgM is found mainly as a tetramer whereas in higher vertebrates it is a pentamer. Previously it was thought that IgD occurred late in evolution due to a duplication of IgM but it is now known that IgD was present more than 400 million years ago. Several lines of evidence suggest that the modern Ig classes found in mammals are present as a result of the duplication of the IgD gene. The advent of “class switching” has been an important development of the immune system of higher vertebrates. This involves the switching of a specific IgM antibody production to IgG, IgA or IgE production with the same specificity in progeny cells. Recently a new class of immunoglobulin has been identified in teleosts, called IgT, which most closely resembles IgM. The gene segments encoding the variable (V) part of an antibody H and L chains contain about 100–150 genes (V, D and J genes), but the ultimate diversity is composed of random recombination of these genes (combinatorial diversity), in addition to various mutation mechanisms normally giving a functional diversity of at least 109 antibody specificities. The low antibody responses in cod might reflect a limited number of functional V-genes encoding antibody sites compared to the repertoire possessed by i.e. the salmon. However, scientists have now characterised and compared the genetic variation of the antibody genes in cod and salmon [23–25] and although differences were shown, these variations cannot fully explain the low responses in cod. Humans produce nine different antibody classes / subclasses, bony fish produce only two or three (isotypes) characterised as IgM, IgD and IgT / IgZ (see above). The studies of IgD genes in cod demonstrated a peculiar organisation of the IgD constant (Fc) genes compared to the ones in salmon and other fish species [26]. It was further shown that this antibody class does not exist in a secreted/serum form, but only as membrane bound antibody receptors on B lymphocytes. This function of IgD is probably the same in cod and salmon. The peculiar organisation of the IgD constant genes in cod does not fully explain why cod B-lymphocytes do not express a proper IgD receptor diversity, because membrane bound IgM and IgD receptor molecules share the same antibody V-gene repertoire. Altogeth- Thematic area: Health 193 er, the antibody gene repertoire in cod and salmon B-lymphocytes seem similar and is probably not responsible for the diverse antibody responses in these two species. As already mentioned, cod express much higher natural immunoglobulin concentrations in blood than salmon [20, 21]. These immunoglobulins or antibodies do not, however, reflect a response towards known antigens or pathogens from natural infection or immunisation. It is not known whether antigens such as bacterial components taken up through the intestines may stimulate such production as is probably the case in mammals. The immunoglobulin production happens either through a massive stimulation of the repertoire of specific (BCR) receptors, or more likely, by the pan-B-cell or mitogen receptors present on these cells. An interesting question is, whether these “unspecific” antibodies protect against pathogenic infections and represent a “natural” immune strategy in cod? As haddock and coalfish are also low antibody responders, this may reflect a common “strategy” of the gadoid species. Further investigations are needed to verify this “hypothesis”. It should also be mentioned that the low responsiveness in cod is not absolute, as recent data have shown that the bacterial fish pathogen Aeromonas salmonicida expresses antigens that to some degree stimulate antibody production [27]. Since the antigen “nature” is unknown, it is too early to speculate about tentative mechanisms of this stimulation. Stimulation of B cells and antibody production is only one of several immune reactions against pathogens and belongs to the so-called “adaptive” arm of the immune system. These mechanisms include immunological education and 194 Aquaculture Research: From Cage to Consumption memory, which means that antigens / vaccines “educate” the immune system to remember the antigen structure and mount stronger reactions when the antigen reappears i.e. during a secondary infection. Stimulation of B-lymphocytes with protein antigens also includes stimulation of T-lymphocytes providing helper molecules (cytokines) important for B-cell proliferation and differentiation into plasma cells. The Tcells express specific antigen receptors (TCR) encoded by genes related to the antibody genes and with a similar number of V-genes expressing the TCR repertoire (see above). As the Band T- lymphocytes cooperate during an antibody response, it could be that a limited antibody response is caused by inefficient stimulation of T cells and a subsequent lack of helper molecules important for B-cell stimulation and proliferation into antibody producing cells. Although the mechanisms for T and B cell cooperation in cod and other fish species have not been studied in sufficient detail, the genes encoding the cod TCR are well characterised. Neither the diversity nor the organisation of the cod TCR genes differ substantially from the ones in other fish species, including salmon. As also mentioned above, a third cell type, the antigen presenting cell (APC; macrophages, dendritic cells etc.) plays an important role in immune stimulation by presenting antigen peptide fragments to the T–cell receptor. The APC phagocytose (“eat”) antigens / pathogens and process protein antigens into peptides which are then bound to the MHC molecules, and present this peptide-MHC complex to the TCR on Tlymphocytes. Although MHC molecules exist as two classes (MHC I and MHC II), only the class II is involved in stimulation of the T-lymphocytes and helping the B-cell in antibody production. Thus, if cod lack or possess crippled MHC II molecules, stimulation of cells involved in antibody responses will be subopti- mal and result in low levels of specific antibodies [28]. In support of this idea, several research groups searching for MHC genes in cod have so far discovered only the MHC I class, but a final conclusion in this issue awaits further gene screening, eventually genomic sequencing. Over the years many vaccine experiments have been performed against bacterial pathogens causing cold-water vibriosis (Vibrio salmonicida), classical vibriosis (Vibrio anguillarum) and atypical furunculosis (atypical Aeromonas salmonicida). The overall conclusion is that vaccinated cod is protected against disease to the same degree as vaccinated salmon [29]. The mechanisms involved in this protection are not known, but commercial vaccines are now under way and will hopefully be as valuable as vaccines developed for the salmon farming industry. The lack of specific antibodies after immunization of cod has challenged scientists for almost two decades, and has also led to studies of the innate arm of the fish/cod immune apparatus. The best studied molecule so far is the so-called “Bacterial Permeability Increasing Protein”, BPI [30] and later also the lysozyme C molecule. These molecules are well known from other species to protect against bacterial infections, and presumably also in cod. The search for “new” molecules and potential immune mechanisms against bacterial infections in cod continue, and hopefully, the future cod farming industry will benefit from this research to the same extent as for established aquaculture species. Prospects and challenges The molecular characterisation of the fish immune system is important for future applications not only for improvement of vaccination, but also for description of various types of immune responses of fish to different stimuli. The regulation of immune genes is both dependent on the type of pathogen that the animal encounters and on the physiological and immunological state of the animal. In human medicine blood tests have long been used to trace immune responses that might indicate early development of disease. One example is the test for C-reactive protein, which is an indicator of bacterial infection. So-called “immune profiling” may also be applied within aquamedicine in the near future. Mx, IFN and other molecules may be important as molecular markers for the health status of the fish. Such markers may be used to, reveal conditions that down-regulate the immune system of the host and indicate how to stimulate the defence against viruses during critical stages of production. Information about immune genes may also be useful for breeding programs. The research on the IFN system of Atlantic salmon has revealed strengths and weaknesses in the innate immune defence against IPN- and ISA-virus, two of the most important viral pathogens in the Norwegian aquaculture industry. Future experiments will study how these viruses counteract the IFN-system of salmon. From mammalian research it is well known that the IFN-system collaborates with the adaptive immune system to combat infection. IFN and IFN-stimulating compounds can function as adjuvants by augmenting the protective effect of vaccines. This area of research also deserves more attention in aquamedicine. So-called CpG-oligonucleotides represent one of the most Thematic area: Health 195 promising vaccine adjuvants and may also be beneficial in fish vaccines since recently they have been shown to induce Mx protein and protection against IPN-virus infection in salmon [30]. The research on fish antibodies has made good progress during the last 30 years. Research has also established that fish have a T cell mediated adaptive immune system similar to that of mammals. Although methods for measuring antibody responses have been available for a long time, methods for measuring T cell mediated immune responses in fish are still lacking. 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