Download Shotton_Peroni_PRO-and-PSO

PRO and PSO, the Publishing
Roles and Statuses Ontologies
David Shotton and Silvio Peroni
Image BioInformatics Research Group
Department of Zoology
University of Oxford, UK
http:/ibrg.zoo.ox.ac.uk
e-mail: [email protected]
© David Shotton, 2012
Published under the Creative Commons Attribution-Noncommercial-Share Alike 3.0 Licence
The requirement – time-constrained relationships

‘Editor’ is a role in the relationship between a person and a document

‘Under review’ is a possible status of a document in the publishing workflow

Such roles and statuses may hold only during a defined period of time, and
may also be contingent on events controlled by agents – such as the editor
sending the document to a reviewer

We need a generic straightforward way to encode such time-constrained roles
and statuses in RDF
The problem – such encoding is not trivial in RDF

Because of the sheer simplicity of the subject-predicate-object triple,
OWL ontologies and RDF-based models are not able to handle
qualifications such as time periods and contexts directly

Instead we need a workaround such
as reification or, more generally, an
n-ary description

Ontological patterns have been
developed to address this issue

For example, by using the
time-indexed situation pattern
(http://ontologydesignpatterns.org/cp/o
wl/timeindexedsituation.owl),
it becomes possible to link a subject to
a time-dependent situation
Encoding Publishing Roles

We have previously used this time-indexed situation pattern to create


PRO, the Publishing Roles Ontology (http://purl.org/spar/pro/)
PRO permit roles of people (e.g. editor, reviewer) to be encoded for specific
periods of time, and in relationship to particular organizations or documents
Diagrammatic representation of PRO
Encoding Publishing Roles

If we look just at the core of this ontology, we see that
this ontology pattern has two important advantages:

First, it relates the subject directly to its role in time

Second, it permits new roles to be specified simply by
adding new individuals as members of the class
pro:Role, without having to modify the ontology

This is much simpler that having to add a new
‘relationship’ class for each new role
:shotton a foaf:Person
; pro:holdsRoleInTime [ a pro:RoleInTime
; pro:withRole pro:author
; pro:relatesToDocument :adventures-in-semantic-publishing ] .
Diagrammatic representation of PSO

We have similarly used this time-indexed situation pattern to create

PSO, the Publishing Status Ontology (http://purl.org/spar/pso/)
.
Encoding Publishing Statuses

Here, a document status, such as being under review, can be associated with
an event related to an agent, for example the event of sending the paper to a
reviewer by an editor, and with a particular timespan of the reviewing process
:adventures-in-semantic-publishing a foaf:Document
; pso:holdsStatusInTime [ a pso:StatusInTime
; pso:withStatus pso:under-review
; pso:isAcquiredAsAConsequenceOf [ a part:Event
; rdfs:label “The sending of the paper to a reviewer”
; part:hasParticipant [ a pso:Agent
; pro:holdsRoleInTime [ a pro:RoleInTime
; pro:withRole pro:editor
; pro:relatesToDocument :adventures-in-semantic-publishing ] ]
; tisit:atTime [ a ti:TimeInterval
; ti:hasIntervalStartDate
“2008-01-13T00:00:00”xsd:dateTime
; ti:hasIntervalEndDate
“2009-03-09T00:00:00”xsd:dateTime ] ] .
CERRO, the CERIF Roles and Relationships Ontology

CERIF is the Common European Research Information Framework

As a contribution to CERIF, we have now used exactly this same ontology
design pattern to create CERRO, the CERIF Roles and Relationships
Ontology

CERRO is available at http://purl.org/cerif/cerro

CERRO complements and extends the draft CERIF and SEMCERIF
ontologies developed by the Linked Data Task Group of euroCRIS

We have proposed the adoption of CERRO in a document available at
http://imageweb.zoo.ox.ac.uk/pub/2012/cerif/Shotton-Peroni_Proposal-forCERRO-the-CERIF-Relationships-Ontology.docx
Diagrammatic representation of CERRO
CERRO
CERRO Roles, and using roles as object properties

CERRO contains 69 relationships, for example

cerro:author
- with respect to a paper, a publisher, etc.

cerro:data-manager
- with respect to a project, a dataset, etc.

cerro:principal investigator - with respect to a project, an institution, etc.

CERRO used the OWL 2 DL capabilities for meta-modelling (known as OWL
punning)

This permits the individuals of a class cerro:Relationship also to be represented
as object properties in the CERRO ontology

This has the advantage that

if one does not need to employ cerro:RelationshipInTime in order to
specify temporal constraints on a relationship

the relationship can be used directly as an object property to relate the
subject to the object
Examples of CERRO usage
:shotton a cerif:Person
; cerro:holdsRelationshipInTime [ a cerro:RelationshipInTime
; cerro:withRelationship cerro:principal-investigator
; cerro:linksToObjectEntity [ a cerif:Project
; dcterms:title “The Open Citation Project”
; foaf:homePage <http://opencitations.net> ]
; tisit:atTime [ a ti:TimeInterval
; ti:hasIntervalStartDate
“2010-06-16T00:00:00”xsd:dateTime
; ti:hasIntervalEndDate
“2011-06-16T00:00:00”xsd:dateTime ] ] .
:shotton a cerif:Person
; cerro:principal-investigator [ a cerif:Project
; foaf:homePage <http://opencitations.net> ] .

Clear, direct and unambiguous
Advantages of using CERRO

The time-indexed relationship is associated directly with a cerif:CoreEntity

The time-indexed relationship is held directly with respect to another cerif:Entity

The starting and ending times refer directly to the cerro:RelationshipInTime

There is no need to specify a new additional indirect ‘linking’ URI for each
pair of entities to be linked, with which URI the times are associated

There is no need to specify many different link properties, one for each
type of relationship, e.g. cerif:isLinkedByPerson, cerif:isLinkedToProject

A new relationship can easily be specified by adding a new individual to the
class cerro:Relationship, without having to change the structure of the ontology

CERRO is complete, published on SourceForge, open source and ready to use


All classes and properties are fully defined and appropriately restricted

The ontology is written in validated OWL 2 DL
CERRO is designed to be used with the draft CERIF and SEMCERIF ontologies