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PDB files listed in the figure legends found in the book can be downloaded from this site. The coordinates of each molecule will download and when ‘clicked’ should, if your browser is set up to handle pdb files correctly, cause a new window to open with the structure displayed. Alternatively readers can obtain the coordinate files from many of the databases described in the book such as www.rcsb.org Chapter 2. Individual coordinate files for each amino acid are available by downloading the relevant coordinate files. Ala Asn Asp Arg Cys Gln Glu Gly His Ile Leu Lys Met Phe Pro Ser Thr Trp Tyr Val And unusual amino acids such as: D-Alanine L-Alanine Citrulline Chapter 3. Chymotrypsin PDB:2CGA Bovine pancreatic trypsin inhibitor PDB:5PTI λ repressor protein PDB:1LMB Cytochrome b-562 PDB:b562 Human thioredoxin PDB:1ERU Plastocyanin PDB: 1AG6 Human cis-trans proline isomerase PDB:1VBS Human γ-crystallin: PDB:2GCR Cytochrome b5 PDB:3B5C Sulfite oxidase PDB:1SOX Neuraminidase PDB:1F8D Tailspike protein of bacteriophage P22 PDB:1TSP Lactate dehydrogenase PDB:1LDG incorrectly written in the book Cro repressor from phage 434 PDB:4CRO Fab region of IgG PDB:7FAB Monoclonal antibody fragment Fab and lysozyme PDB:1FDL bacteriocin AS-48 PDB:1E68 microcin J25 PDB:1HG6 now viewed as obsolete entry MCoTI-II PDB: 1HA9, 1IB9 RTD-1 PDB:1HVZ kalataB1 PDB:1KAL SFTI-1 PDB: 1SFI, 1JBL Chapter 4. Leucine zipper DNA binding protein GCN4 PDB:1YSA c-jun c-fos proto-oncogene dimer plus DNA PDB:1FOS gp41 core domain of SIV PDB:2SIV Silk polymers PDB:2SLK Collagen PDB:1BKV EGF domains from fibrillin-1 PDB:1EMN Chapter 5. Bacteriorhodopsin PDB:1C3W G subunit of transducin PDB:1TND Reaction centre from Rh.viridis PDB:1PRC OmpF PDB: 2OMF mistakenly omitted from legends -hemolysin PDB: 7AHL bovine cytochrome bc1 complex PDB: 1BE3 Bovine cytochrome oxidase PDB:1OCC, 2OCC subunit of ATPase PDB:1BMF c ring monomer of Fo ATPase PDB:1A91 SR Ca-ATPase PDB:1EUL Chapter 6. Tuna cytochrome c PDB:3CYT Yeast iso-1 cytochrome c PDB:1YCC P. denitrificans cytochrome c550 PDB:155C R. rubrum cytochrome c2 PDB:1C2R Horse cytochrome c PDB:1CRC Chymotrypsin PDB:2CGA Elastase PDB:1QNJ Trypsin PDB:1TGN Chapter 7. RNase A PDB: 1FS3 Lysozyme PDB: 1HEW B.stearothermophilus tyrosyl tRNA synthetase plus tyrosyl adenylate PDB: 3TS1 note the PDB file name is written incorrectly in legend of figure. Gln-tRNA synthetase in complex of tRNA and ATP PDB: 1GSG note the PDB file name is written incorrectly in legend. Binary complex formed between trypsin and BPTI PDB: 2PTC Cyclo-oxygenase PDB: 1PRH Phosphofructokinase PDB: 1PFK Aspartate transcarbamoylase PDB: 1AT1 note the PDB file name is written incorrectly in legend. Chapter 8. Cdk2 PDB: 1HCK Cdk2 +cyclin binary complex mistakenly omitted from legends PDB: 1FIN T7 RNA polymerase PDB: 1CEZ Mouse transcription factor Zif268 in a complex with DNA PDB: 1A1H note the PDB file name is written incorrectly in legend. GCN4 transcription factor complexed with DNA PDB: 1YSA, 2ZTA is written incorrectly in legend. Max transcription factor plus DNA PDB: 1AN2 note the PDB file name Ubx homeobox PDB: 1B8I Phenylalanyl tRNA PDB: 6TNA C terminal domain of E. coli ribosomal subunit L7/L12 PDB: 1CTF L30 domain of the large ribosomal subunit of T. thermophilus PDB: 1BXY N-terminal domain of the spliceosome RNA binding protein U1A PDB: 1FHT EF-Tu in a complex with Phe-tRNA PDB: 1TTT EF-G PDB: 2EFG FfH subunit from T. aquaticus PDB: 2FFH Mouse importin- PDB: 1EJL incorrectly described in legend 20S proteasome T. acidophilum PDB: 1PMA Chapter 10. Tendamistat PDB : 2AIT, 1HOE Interleukin-1β PDB: 7I1B Thioredoxin PDB: 1TRU β tubulin dimer PDB: 1TUB Green fluorescent protein PDB: 1EMA Chapter 11. GroEL monomer PDB: 1GRL GroES PDB: 1G31 Thermosome PDB: 1RYP not AG6 as written in legend Complex of transthyretin and retinol binding protein PDB: 1RLB Transthyretin PDB: 1BMZ SH3 domain PDB: 1PNJ Mouse PrPc protein PDB: 1AG2 Chapter 12. gp120 core in a complex with a neutralizing antibody and a two domain fragment of CD4 PDB: 1G9N HA1/HA2 ‘monomer’ PDB: 2HMG Neuraminidase PDB: 2BAT Neuraminidase showing substrate bound to active site PDB: 1MWE β secretase PDB: 1M4H p53-DNA complex PDB: 1TUP α1-antitrypsin PDB: 2PSI, 7API (note 2PSI is now replaced 1QLP).