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Additional file 6: Identified SFPs Affy Probe ID containing SFP Gma.978.1.S1_at GmaAffx.83700.1.S1_at Gma.2101.1.S1_at GmaAffx.78358.2.S1_at GmaAffx.28966.1.S1_at GmaAffx.61076.1.S1_at Gma.4188.3.S1_a_at GmaAffx.52400.1.S1_s_at GmaAffx.92301.1.S1_s_at Gma.2424.2.S1_a_at Gma.10827.3.S1_at Gma.17592.1.S1_at GmaAffx.91660.1.S1_at GmaAffx.86105.1.S1_at GmaAffx.1301.47.A1_at Gma.13209.1.S1_at Gma.14204.1.A1_at Gma.2811.1.S1_at Gma.3997.1.S1_at GmaAffx.53416.1.S1_at GmaAffx.82973.1.S1_at GmaAffx.83133.1.S1_at Gma.3265.1.S1_at GmaAffx.72674.1.S1_at Gma.1955.4.A1_at Chromosome Best Hit UniProt ID GO TERM 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 Q6H4P7 Q1S6W0 Q9M6N2 Q948H2 No UniProt Hit No UniProt Hit Q8RWD4 Q9FHY6 Q1SZU3 Q1SSV5 Q9LJ66 P49299 Q6RIB6 Q71QD5 No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit Q1S258 No UniProt Hit No UniProt Hit No UniProt Hit Q6EP64 Q9SU16 Q5PYQ5 GO:0006418 GO:0016787 GO:0016301 GO:0019252 GO:0005554 GO:0005554 GO:0005554 GO:0006914 GO:0005506 GO:0004108 GO:0016615 GO:0003700 GO:0005554 GO:0005554 GO:0005509 GO Annotation ATP binding Hydrolase Activity Kinase Activity Starch Biosynthesis No UniProt Hit No UniProt Hit Unknown Function Unknown Function Unknown Function Autophagy Cation transport Citrate Synthase Dehydrogenase Protein Metabolism Transcription Factor No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit Unknown Function Unknown Function Cation transport Gma.7757.1.S1_at Gma.7757.1.S1_at GmaAffx.47461.1.S1_at GmaAffx.3025.1.S1_at Gma.2977.2.S1_a_at Gma.17343.1.A1_at GmaAffx.8019.1.S1_at Gma.404.1.A1_at Gma.7761.1.S1_a_at Gma.3712.1.S1_s_at Gma.15061.1.S1_at GmaAffx.50907.1.S1_at GmaAffx.61337.1.S1_at Gma.8011.2.S1_a_at GmaAffx.93614.1.S1_at GmaAffx.82088.1.S1_at GmaAffx.90942.1.S1_at Gma.4040.1.S1_at Gma.2069.1.S1_at Gma.12885.1.A1_at Gma.5163.2.S1_at GmaAffx.11464.1.S1_at GmaAffx.85311.1.S1_at GmaAffx.3025.1.S1_at GmaAffx.20345.1.S1_at Gma.4461.1.S1_at GmaAffx.19097.1.S1_at Gma.11156.1.S1_s_at Gma.3712.1.S1_s_at 3 3 3 4 4 4 4 4 4 4 5 5 5 5 5 5 5 5 5 5 5 5 5 6 6 6 6 6 6 Q93XA0 Q93XA0 Q1RWC1 Q69ST5 Q9FKI4 No UniProt Hit No UniProt Hit Q76DY0 Q9SLZ4 Q7XYY0 P35100 Q1SMQ9 Q2HU62 Q9FV81 Q1RV18 Q6ZGX8 Q40203 Q1RY71 Q6Z918 No UniProt Hit Q1SBT2 Q9LS48 Q9FMN3 Q69ST5 Q1T0B2 No UniProt Hit No UniProt Hit Q5JML5 Q7XYY0 GO:0003700 GO:0003700 GO:0005554 GO:0005524 GO:0008080 GO:0003700 GO:0003700 GO:0005524 GO:0005509 GO:0004553 GO:0006412 GO:0005515 GO:0006886 GO:0015031 GO:0003700 GO:0004306 GO:0005554 GO:0005554 GO:0005554 GO:0006418 GO:0016126 GO:0005554 GO:0005554 Transcription Factor Transcription Factor Unknown Function ATP binding N-acetyltransferase activity No UniProt Hit No UniProt Hit Transcription Factor Transcription Factor Unknown Function ATP binding Cation transport Hydrolase Activity Protein Biosynthesis Protein Folding Protein Transport Protein Transport Transcription Factor Transferase No UniProt Hit Unknown Function Unknown Function Unknown Function ATP binding Sterol Biosynthesis No UniProt Hit No UniProt Hit Unknown Function Unknown Function Gma.5866.1.S1_x_at Gma.8653.1.A1_at GmaAffx.31836.1.S1_at GmaAffx.84246.1.S1_at Gma.4374.1.S1_s_at Gma.5994.1.S1_at GmaAffx.45517.1.S1_at Gma.8776.1.S1_at Gma.12223.1.S1_at Gma.8911.1.S1_at Gma.7058.1.A1_at GmaAffx.77266.1.S1_at Gma.1289.1.S1_at Gma.7768.1.A1_s_at GmaAffx.26598.1.S1_at Gma.4456.1.S1_at Gma.16024.1.S1_s_at GmaAffx.79966.1.S1_at GmaAffx.50907.1.S1_at GmaAffx.93166.1.S1_s_at Gma.181.1.S1_at GmaAffx.31381.1.S1_at GmaAffx.61337.1.S1_at GmaAffx.79733.1.S1_s_at Gma.8776.1.S1_at Gma.8011.2.S1_a_at Gma.8911.1.S1_at GmaAffx.74113.1.S1_at Gma.3510.1.S1_at 6 6 6 6 7 7 7 7 7 7 7 7 7 7 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 Q9XIA7 Q9LXZ7 Q8LCV7 Q9LYD7 Q2MJ15 Q1SRH3 Q9M3Y4 Q1SG75 Q1SF86 Q9SAG7 Q1T4P7 No UniProt Hit Q05929 Q9SH93 Q9LFC2 Q9MUK5 Q1T4L1 Q2QQ50 Q1SMQ9 Q69F96 Q93Y50 Q8VYN6 Q2HU62 Q39898 Q1SG75 Q9FV81 Q9SAG7 Q58I04 Q39658 GO:0005554 GO:0005554 GO:0005554 GO:0005554 GO:0005506 GO:0004869 GO:0045735 GO:0016491 GO:0005515 GO:0003723 GO:0003700 GO:0005554 GO:0005554 GO:0005554 GO:0004040 GO:0015144 GO:0003824 GO:0005509 GO:0016760 GO:0006633 GO:0006096 GO:0004553 GO:0016491 GO:0006412 GO:0003723 GO:0015770 GO:0003700 Unknown Function Unknown Function Unknown Function Unknown Function Cation transport Cysteine Protease Nutrient Reservoir Activity Oxidoreductase Protein Folding RNA Binding Transcription Factor No UniProt Hit Unknown Function Unknown Function Unknown Function Amidase Activity Carbohydrate Transport catalytic_activity Cation transport Cellulose Synthase fatty_acid_biosynthesis Glycolysis Hydrolase Activity Kunitz trypsin inhibitor Oxidoreductase Protein Biosynthesis RNA Binding Sugar Transport Transcription Factor Gma.2069.1.S1_at GmaAffx.41460.1.S1_at GmaAffx.64946.1.S1_at GmaAffx.85112.1.S1_at Gma.16023.2.S1_at Gma.1909.1.S1_at GmaAffx.27319.1.S1_at GmaAffx.77832.1.S1_at GmaAffx.18381.1.S1_at Gma.3700.2.S1_at Gma.4653.1.S1_at GmaAffx.72771.1.A1_at Gma.15264.1.S1_at GmaAffx.76755.1.S1_at Gma.5974.1.S1_at GmaAffx.92783.1.S1_s_at Gma.16925.1.A1_at Gma.2811.1.S1_at Gma.3997.1.S1_at GmaAffx.20697.1.S1_at GmaAffx.4898.2.S1_at GmaAffx.51828.1.S1_s_at GmaAffx.60948.1.S1_at GmaAffx.67495.1.S1_at Gma.978.1.S1_at Gma.2101.1.S1_at Gma.2977.2.S1_a_at Gma.6914.1.A1_at Gma.17504.1.S1_at 8 8 8 8 9 9 9 9 9 9 9 10 10 10 10 10 10 10 10 10 10 10 10 10 11 11 11 11 11 Q6Z918 No UniProt Hit No UniProt Hit Q7XPH4 Q9FMX7 No UniProt Hit P93045 Q9FX34 Q9FI73 O22164 Q5YJQ1 Q1SKU8 Q1SM16 Q8L960 Q1SCD5 Q58I24 No UniProt Hit No UniProt Hit Q1S258 No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit Q6H4P7 Q9M6N2 Q9FKI4 Q1RW61 No UniProt Hit GO:0004306 GO:0005554 GO:0003824 GO:0005515 GO:0006499 GO:0006810 GO:0005554 GO:0005554 GO:0008270 GO:0003676 GO:0003723 GO:0005525 GO:0003746 GO:0005524 GO:0016301 GO:0008080 GO:0006388 Transferase No UniProt Hit No UniProt Hit Unknown Function catalytic_activity No UniProt Hit Protein Folding Protein Metabolism Transport Unknown Function Unknown Function Cation transport Nucleic Acid Binding RNA Binding Translation Translation No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit ATP binding Kinase Activity N-acetyltransferase activity Translation No UniProt Hit Gma.9816.1.S1_at GmaAffx.80241.1.S1_s_at Gma.5866.1.S1_x_at GmaAffx.92301.1.S1_s_at GmaAffx.47078.1.A1_at Gma.2977.2.S1_a_at GmaAffx.80323.2.S1_at Gma.1477.1.S1_at Gma.3265.1.S1_at GmaAffx.38910.1.S1_at GmaAffx.47461.1.S1_at GmaAffx.72674.1.S1_at GmaAffx.88213.1.S1_at Gma.5734.1.S1_at Gma.6749.1.S1_at Gma.14194.1.A1_at Gma.16753.1.S1_at Gma.13456.1.S1_at Gma.10222.1.A1_at Gma.5866.1.S1_x_at Gma.3904.1.S1_x_at GmaAffx.15192.1.S1_at GmaAffx.31689.1.S1_at Gma.13363.1.S1_s_at GmaAffx.5496.1.S1_at Gma.9902.1.A1_at GmaAffx.40133.1.S1_at GmaAffx.7213.1.A1_at Gma.14194.1.A1_at 11 11 11 11 11 11 11 11 11 11 11 11 11 12 12 12 12 12 12 12 13 13 13 13 13 13 13 13 13 No UniProt Hit No UniProt Hit Q9XIA7 Q1SZU3 Q6Z1G7 Q9FKI4 No UniProt Hit Q1SZZ7 Q6EP64 Q1SS74 Q1RWC1 Q9SU16 Q8VY47 Q7XY14 Q2HSH7 Q8GYC2 Q9SAA2 Q93YQ0 No UniProt Hit Q9XIA7 P49597 Q1T1I6 Q9SYM7 Q1PCR8 Q6S4R9 Q94JU3 Q1SMG8 Q8S3S6 Q8GYC2 GO:0005554 GO:0005554 GO:0004739 GO:0008080 GO:0005554 GO:0005554 GO:0005554 GO:0005554 GO:0005554 GO:0005554 GO:0017004 GO:0004407 GO:0016925 GO:0006508 GO:0003723 GO:0005554 GO:0003824 GO:0006812 GO:0005506 GO:0006118 GO:0016787 GO:0004708 GO:0016829 GO:0003676 GO:0016925 No UniProt Hit No UniProt Hit Unknown Function Unknown Function Dehydrogenase N-acetyltransferase activity No UniProt Hit Unknown Function Unknown Function Unknown Function Unknown Function Unknown Function Unknown Function Cytochrome Histone Deaceetylase Protein Metabolism proteolysis RNA Binding No UniProt Hit Unknown Function catalytic_activity Cation Transport Cation Transport Electron Transport Hydrolase Activity Kinase Activity Lyase Activity Nucleic Acid Binding Protein Metabolism Gma.16526.1.S1_at Gma.8911.1.S1_at GmaAffx.92612.1.S1_s_at Gma.4463.1.S1_at Gma.7761.1.S1_a_at GmaAffx.51287.1.S1_at Gma.9401.1.S1_at GmaAffx.1268.1.S1_at Gma.4188.3.S1_a_at GmaAffx.16959.1.S1_s_at GmaAffx.73763.1.S1_at GmaAffx.75685.1.S1_at GmaAffx.88213.1.S1_at Gma.3204.1.S1_at Gma.8774.1.A1_at Gma.13363.1.S1_s_at Gma.3203.1.S1_at GmaAffx.24398.1.A1_at GmaAffx.92612.1.S1_s_at Gma.7761.1.S1_a_at GmaAffx.18381.1.S1_at GmaAffx.54736.1.S1_at Gma.11156.1.S1_s_at GmaAffx.13040.1.S1_at GmaAffx.88272.1.S1_at Gma.4374.1.S1_s_at GmaAffx.16523.1.S1_at GmaAffx.77832.1.S1_at GmaAffx.1301.47.A1_at 13 13 13 13 13 13 13 13 13 13 13 13 13 15 15 15 15 15 15 15 15 15 15 15 16 16 16 16 16 Q2R4U5 Q9SAG7 Q2PEV8 Q6TKQ3 Q9SLZ4 P56820 No UniProt Hit No UniProt Hit Q8RWD4 Q9FN38 Q9LKA5 Q2HWC9 Q8VY47 Q6PP98 Q6ATY7 Q1PCR8 No UniProt Hit Q1SP65 Q2PEV8 Q9SLZ4 Q9FI73 No UniProt Hit Q5JML5 Q6Z1R9 Q9C5K4 Q2MJ15 Q5N8C4 Q9FX34 No UniProt Hit GO:0006508 GO:0003723 GO:0003723 GO:0006355 GO:0003700 GO:0003743 GO:0005554 GO:0005554 GO:0005554 GO:0005554 GO:0005554 GO:0006418 GO:0015087 GO:0006118 GO:0016301 GO:0005515 GO:0003723 GO:0003700 GO:0006810 GO:0005524 GO:0005506 GO:0016301 GO:0006499 GO:0003700 proteolysis RNA Binding RNA Binding Transcription Factor Transcription Factor Translation No UniProt Hit No UniProt Hit Unknown Function Unknown Function Unknown Function Unknown Function Unknown Function ATP binding Cation Transport Electron Transport Kinase Activity Protein Folding RNA Binding Transcription Factor Transport No UniProt Hit Unknown Function Unknown Function ATP binding Cation transport Kinase Activity Protein Metabolism Transcription Factor GmaAffx.11179.2.S1_s_at GmaAffx.15811.1.A1_at GmaAffx.77266.1.S1_at GmaAffx.90082.1.S1_s_at GmaAffx.15192.1.S1_at GmaAffx.89881.1.S1_at Gma.3138.1.S1_at Gma.10873.1.S1_s_at Gma.17683.1.S1_at Gma.10605.1.S1_at Gma.5163.2.S1_at Gma.8881.1.A1_at GmaAffx.24966.1.S1_at Gma.3137.1.S1_at GmaAffx.93166.1.S1_s_at GmaAffx.31381.1.S1_at Gma.16673.1.A1_at GmaAffx.87763.1.S1_at Gma.3510.1.S1_at Gma.7768.1.A1_s_at Gma.1955.4.A1_at GmaAffx.47203.1.S1_at Gma.12704.1.A1_at GmaAffx.75422.1.S1_at Gma.7757.1.S1_at Gma.5974.1.S1_at Gma.13798.1.A1_at Gma.602.1.S1_at Gma.9330.1.S1_at 16 16 16 16 17 17 17 17 17 17 17 17 17 18 18 18 18 18 18 18 19 19 19 19 19 19 19 19 19 No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit Q1T1I6 Q8GUR9 Q9S9W2 No UniProt Hit No UniProt Hit Q9LYH6 Q1SBT2 Q9FJL6 Q9SN77 Q1T3D6 Q69F96 Q8VYN6 No UniProt Hit Q2V398 Q39658 Q9SH93 Q5PYQ5 Q9FV54 Q2MZW1 No UniProt Hit Q93XA0 Q1SCD5 No UniProt Hit No UniProt Hit No UniProt Hit GO:0006812 GO:0006118 GO:0016491 GO:0005554 GO:0005554 GO:0005554 GO:0005554 GO:0006812 GO:0016760 GO:0006096 GO:0006730 GO:0003700 GO:0005554 GO:0005509 GO:0005506 GO:0019825 GO:0006499 GO:0003700 GO:0005525 No UniProt Hit No UniProt Hit No UniProt Hit No UniProt Hit Cation transport Electron Transport Oxidoreductase No UniProt Hit No UniProt Hit Unknown Function Unknown Function Unknown Function Unknown Function Cation Transport Cellulose Synthase Glycolysis No UniProt Hit Protein Metabolism Transcription Factor Unknown Function Cation transport Cation Transport Oxidase Protein Metabolism Transcription Factor Translation No UniProt Hit No UniProt Hit No UniProt Hit GmaAffx.33971.1.A1_at Gma.2120.1.S1_at Gma.15264.1.S1_at GmaAffx.20686.1.A1_at GmaAffx.89933.1.S1_at Gma.12340.1.S1_at Gma.13769.1.S1_at Gma.602.1.S1_at GmaAffx.32146.1.S1_at 19 20 20 20 20 20 Unknown Unknown Unknown No UniProt Hit Q330L2 Q1SM16 No UniProt Hit O65844 No UniProt Hit No UniProt Hit No UniProt Hit Q6QXZ8 GO:0015385 GO:0003676 GO:0006457 GO:0000163 GO:0005529 GO:0009775 No UniProt Hit Cation transport Nucleic Acid Binding Protein Folding Protein Metabolism Sugar Binding No UniProt Hit No UniProt Hit Electron Transport