Download Table S2. - Springer Static Content Server

Table S2. Homology analysis of AQP genes of Brassica rapa.
Gene name
Accession
no.
Bra040150
BrSIP1;1a
Bra002151
Bra014661
BrSIP2;1a
Bra003257
BrSIP2;1b
Bra007285
BrSIP2;1c
Bra013361
BrNIP1;2a
Bra012567
Bra005430
BrNIP2;1a
Bra005428
Bra035520
BrNIP3;1a
BrNIP3;1b
Aquaporin SIP1-1
Aquaporin SIP1;2-like
Bra033867
Quary
cover
88%
e-value Identity
3e-126
87%
Arabidopsis thaliana
94%
3e-79
52%
Solanum lycopersicum
XP002884428
SIP1;1
100%
1e-141
90%
XP007030233
NP187059
XP007030233
XP002878121
Small basic intrinsic protein 1
Aquaporin SIP1;1
Small basic intrinsic protein 1
SIP2;1
98%
94%
97%
100%
2e-79
3e-95
6e-76
2e-152
63%
67%
57%
88%
BAO18651
Small basic intrinsic protein 2;1
99%
1e-99
59%
XP002878121
SIP2;1
100%
8e-154
90%
BAO18651
Small basic intrinsic protein 2;1
100%
1e-100
92%
XP002878121
SIP2;1
100%
8e-134
80%
BAO18651
Small basic intrinsic protein 2;1
100%
1e-91
57%
AAM61294
Major intrinsic protein (MIP)- like
100%
00
89%
NP001274704
Aquaporin NIP1;1-like
94%
6e-128
83%
XP010434480
Aquaporin NIP1;2-like
100%
00
88%
BrNIP1;2b
BrNIP2;1b
Name of protein
NP001274290
BrSIP1;1b Bra031946
BrSIP1;2
Top matched
clone
NP187059
NP001274704
Aquaporin NIP1;1-like
94%
6e-128
83%
ACD75049
Aquaporin
100%
0
92%
NP001274704
Aquaporin NIP1;1
98%
6e-88
51%
ACD75049
Aquaporin
100%
6e-179
90%
Nodulin-26-like
82%
5e-89
78%
NP174472
Aquaporin NIP3;1
99%
0
86%
NP001274279
Nodulin-26-like
76%
1e-95
59%
NP174472
NP001274279
Aquaporin NIP3;1
Nodulin-26-like
95%
69%
0
2e-92
78%
61%
NP001274279
Holologus species
Function
(1)
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
Arabidopsis lyrata
subsp. lyrata
Theobroma cacao
Responsive to Pod colour
A. thaliana
T. cacao
Responsive to Pod colour
A. lyrata subsp. lyrata
Responsive to tissue-specific and development-specific
S. lycopersicum
expression; water and solute transport in leaves and during
fruit development.
A. lyrata subsp. lyrata
Responsive to tissue-specific and development-specific
S. lycopersicum
expression; water and solute transport in leaves and during
fruit development.
A. lyrata subsp. lyrata
Responsive to tissue-specific and development-specific
S. lycopersicum
expression; water and solute transport in leaves and during
fruit development.
A.thaliana
Responsive to tissue-specific and development-specific
S. lycopersicum
expression; water and solute transport in leaves and during
fruit development.
Camelina sativa
S. lycopersicum
A. thaliana
S. lycopersicum
A. thaliana
S. lycopersicum
A. thaliana
S. lycopersicum
A. thaliana
S. lycopersicum
Ref.
Unpublished
(3)
(1)
(3)
Unpublished
(2)
Unpublished
(2)
Unpublished
(2)
Unpublished
(2)
Unpublished
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
Unpublished
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
Unpublished
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
Unpublished
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
Unpublished
Responsive to tissue-specific and development-specific
(2)
expression; water and solute transport in leaves and during
fruit development.
Bra025437
BrNIP4;1
NP_198597
Aquaporin NIP4;1
BAO18645
XP002302955
BrNIP4;2a Bra028151
BrNIP4;2b
Bra025436
Bra025435
100%
2e-178
87%
Nodulin26-like intrinsic protein 4;1 98%
1e-125
68%
Aquaporin, MIP family, NIP
subfamily
1e-124
66%
98%
BAO18645
Nodulin26-like intrinsic protein 4;1 94%
4e-125
86%
BAO18645.
Nodulin26-like intrinsic protein 4;1 93%
2e-91
74%
XP007033055
Nodulin26-like intrinsic protein 4;1 91%
2e-85
64%
BAO18645.
Nodulin26-like intrinsic protein 4;1 92%
7e-65
59%
XP007033055
Nodulin26-like intrinsic protein 4;1 90%
4e-58
56%
NP001105021
Aquaporin NIP3;1
95%
2e-136
72%
ABY19373
Major intrinsic protein NIP5;1
98%
6e-142
71%
NP001105021
Aquaporin NIP3;1
95%
1e-135
72%
ABY19373
Major intrinsic protein NIP5;1
98%
2e-137
69%
A. thaliana
S. lycopersicum
P. trichocarpa
S. lycopersicum
S. lycopersicum
T. cacao
S. lycopersicum
BrNIP4;2c
BrNIP5;1a Bra033181
BrNIP5;1b Bra000710
AFN44229
BrNIP6;1a
Bra008442
XP007023401
AFN44229
BrNIP6;1b
Bra035156
ABY19374
ABY19373
BrNIP7;1
Bra020777
XP007034632
ACI95283
BrTIP1;1
100%
6e-167
85%
100%
3e-169
81%
100%
9e-167
80%
99%
1e-155
75%
77%
4e-48
46%
90%
3e-90
57%
100%
1e-169
98%
100%
3e-157
90%
tonoplast intrinsic protein
Salt-stress induced tonoplast
intrinsic protein
100%
7e-171
98%
100%
2e-152
84%
Tonoplast intrinsic protein
100%
6e-165
94%
Aquaporin NIP6,1
T. cacao
Unpublished
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
Responsive to Pod colour development
Responsive to Pod colour development
(3)
Zea mays
Lotus japonicus
Responsive to tissue specific expression
(4)
Responsive to arsenic transportation in crops plant
(5)
Z. mays
L. japonicus
Responsive to tissue specific expression
(4)
Responsive to arsenic transportation in crops plant
(5)
Gossypium hirsutum
T. cacao
Unpublished
Responsive to Pod colour development
G. hirsutum
Aquaporin
Major intrinsic protein NIP6;1
Major intrinsic protein NIP5;1
Aquaporin NIP1;1,
Tonoplast intrinsic protein
(3)
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
(3)
Unpublished
L. japonicus
Responsive to arsenic transportation in crops plant
(5)
L. japonicus
T. cacao
Responsive to arsenic transportation in crops plant
Responsive to Pod colour development
(5)
(3)
Sinapis arvensis
------------------
Unpublished
G. hirsutum
Responsive to cell freezing-tolerance
(6)
Responsive to water transportation and cell growth
associated with radicle protrusion.
Responsive to salt stress and ABA treatment
(7)
B. napus
Responsive to water transportation and cell growth
associated with radicle protrusion.
(7)
Bra017222
ACP28878
Bra025210
AAD39372
BrTIP1;2a
AAB62692
BrTIP1;2b
Aquaporin
Unpublished
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
Bra032937
AAD39372
Tonoplast intrinsic protein
(8)
A. thaliana
B. napus
AAB62692
XP002872891
BrTIP1;3
BrTIP2;1a Bra027181
BrTIP2;1b Bra001626
100%
4e-155
5e-169
85%
97%
Bra021171
Bra026245
BrTIP2;3a Bra024943
Bra022131
BrTIP2;3b
100%
1e-145
83%
AAL38357
Tonoplast intrinsic protein 1,3
Delta-tonoplast intrinsic protein
100%
2e-160
96%
ADE34289.
Aquaporin TIP2;3
100%
2e-145
85%
AAL38357
Alpha-tonoplast intrinsic protein
100%
4e-158
94%
AFH36343
Aquaporin TIP2;1
100%
5e-141
83%
Aquaporin TIP2-1
97%
1e-131
96%
AFH36343
Aquaporin TIP2;1
98%
3e-117
85%
NP199556
Aquaporin TIP2-3
98%
2e-154
91%
NP188245
BrTIP2;2
100%
Bra037415
XP007009482
BrTIP2;1c
Salt-stress induced tonoplast
intrinsic protein
Aquaporin TIP1;3
XP007039804
A. thaliana
Quercus petraea
A. thaliana
Q. petraea
A. thaliana
T. cacao
86%
1e-156
91%
Aquaporin
97%
2e-133
80%
NP199556
Aquaporin TIP2;3
98%
2e-128
94%
A. thaliana
NP001274703
TIP protein
97%
1e-110
84%
S. lycopersicum
Alpha-tonoplast intrinsic protein
100%
4e-168
94%
BAO18638
Tonoplast intrinsic protein 3;1
90%
3e-113
71%
XP002887476
Alpha-tonoplast intrinsic protein
100%
1e-160
90%
90%
9e-114
70%
CAA65187
BAO18638
BrTIP5;1
A. thaliana
G. hirsutum
1e-138
BrTIP3;1b Bra016014
BrTIP4;1
T. cacao
100%
Tonoplast intransic protein2;3
Aquaporin TIP2;3
BrTIP3;1a Bra008079
BrTIP3;2b Bra031005
A. thaliana
A. lyrata subsp. lyrata
99%
NP199556
XP002887476
BrTIP3;2a Bra025947
Responsive to high salt condition and ABA treatments
Tonoplast intrinsic protein 3;1
XP002890250
Beta-tonoplast intrinsic protein
100%
8e-163
91%
NP001105045
XP007099759
Aquaporin TIP3;2
Beta-tonoplast intrinsic prote in
98%
97%
1e-112
2e-125
62%
74%
NP001241721
Aquaporin TIP3;2
98%
5e-112
62%
XP002878889
TIP4;1
100%
8e-153
93%
DAA33872
TPA: aquaporin TIP4;1
97%
3e-128
81%
EOY22874
Tonoplast intrinsic protein 5.1
Aquaporin TIP5;1
98%
86%
3e-109
1e-63
68%
78%
A. thaliana
Helianthus annuus
Unpublished
Responsive to pod colour
Unpublished
(9)
Responsive to root development
Unpublished
(10)
Salanoubat
et al., 2000
Responsive to root development
Unpublished
(3)
Unpublished
Responsive to drought
(11)
Unpublished
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during
fruit development.
(2)
Unpublished
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
Unpublished
Responsive to tissue-specific and development-specific
expression; water and solute transport in leaves and during (2)
fruit development.
A. lyrata subsp. lyrata
Z. mays
T. cacao
Z. mays
(10)
Responsive to pod colour
A. lyrata subsp. lyrata
S. lycopersicum
(3)
Responsive to water balance and nutrient uptake in cotton
A. lyrata subsp. lyrata
S. lycopersicum
(8)
Unpublished
Responsive to tissue specific expression of the genes
Responsive to Pod colour development
(4)
(3)
Responsive to tissue specific expression of the genes
(4)
A. lyrata subsp. lyrata
Unpublished
Bra034271
Bra018148
NP001105036
G. hirsutum
T. cacao
Z. mays
Responsive to water balance and nutrient uptake in cotton
(9)
Responsive to Pod colour development
Responsive to tissue specific expression
(3)
(4)
BrPIP1;1a
BrPIP1;1b
BrPIP1;2a
Bra007603
BAA32777
KC969669
100%
100
0
99%
75%
100%
0
98%
KC969669
Plasma membrane aquaporin
Aquaporin MaPIP1;1
Plasma membrane aquaporin
(PAQ1)
Aquaporin MaPIP1;1
100
1e-65
74%
M. acuminata
CAA64896
Transmembrane channel protein
100%
1e-174
88%
B. oleracea
AAG23180
Aquaporin PIP1b2
100%
2e-173
87%
B. oleracea
AAG23179
Aquaporin PIP1b2
100%
00
98%
B. oleracea
KC969669
Aquaporin MaPIP1;1
100
2e-107
75%
M. acuminata
AAG23180
Aquaporin PIP1b2
100%
00
95%
B. oleracea
BAA32777
Bra014437
Bra039301
BrPIP1;2b Bra004950
BrPIP1;3a Bra032644
AEA40491
BrPIP1;3b Bra033248
AAL32688
KC969669
BrPIP1;4
BrPIP1;5
Bra000974
Bra019307
NP567178
KC969669
XP002869782
KC969669
AAD39373
BrPIP2;1
Bra006997
ABK60195
BAA92261
Aquaporin PIP1-3
Plasma membrane intrinsic protein
1C
Aquaporin MaPIP1;1
Plasma membrane intrinsic protein
1;4
Aquaporin MaPIP1;1
PIP1_5/PIP1D
Aquaporin MaPIP1;1
Plasma membrane intrinsic protein
1
PIP2 protein
Plasma membrane aquaporin 2C
Bra005215
(14)
(15)
(15)
(13)
(15)
0
97%
A. thaliana
100
13-65
75%
M. acuminata
99%
0
98%
A. thaliana
Unpublished
100
100%
100
1e-65
0
1e-107
75%
97%
75%
M. acuminata
Responsive to drought and salt stress
A. lyrata subsp.lyrata
M. acuminata
Responsive to drought and salt stress
(13)
Unpublished
(13)
100%
0
100%
B. napus
Responsive to water transportation
(7)
99%
4e-175
86%
G. hirsutum
Responsive to root development and in stresses (NaCl,
cold, PEG).
Regulated in certain tissues at the translational level and
by the rate of protein turnover.
Responsive to water transport between xylem parenchyma
cells and embolized vessels
Regulated in an organ- and tissue-specific manner, water
transport in plant body during growth and development.
Responsive to root development and in stresses (NaCl,
cold, PEG).
Regulated in an organ- and tissue-specific manner
100%
0
99%
R. sativus
Juglans regia
7e-173
83%
BAA92260
Plasma membrane aquaporin 2b
99%
2e-156
82%
R. sativus
98%
4e-131
69%
G. hirsutum
BAA92261.1
Plasma membrane aquaporin 2c
99%
0
97%
AEQ29857
Aquaporin PIP2
99%
1e-172
84%
R. sativus
Malus prunifolia
BAA92260
Plasma membrane aquaporin 2b
99%
1e-155
99%
BrPIP2;3b Bra005216
BrPIP2;4b
(16)
(13)
100%
100%
ABK60195
PIP2 protein
94%
4e-137
87%
ACU00103
Plasma membrane intrinsic
protein2;1
100%
2e-172
82%
AAO39008
Plasma intrinsic protein 2,2
100%
5e-170
81%
BAA32778
Plasma membrane aquaporin
100%
4e-175
84%
BrPIP2;4a Bra020238
Responsive to Salinity
(12)
96%
Plasma intrinsic protein 2,2
PIP2 protein
(12)
(13)
0.0
AAO39008
BK60195
BrPIP2;3a Bra023103
B. oleracea var. italica
Responsive to organ- and tissue-specific manner
Responsive to drought and salt stress
Regulated in certain tissues at the translational level and
by the rate of protein turnover.
Responsive to drought and salt stress
Responsive to drought inducibility and constituents of the
pollen coat
Responsive to water flow between the pollen and stigma
papillae
Responsive to water flow between the pollen and stigma
papillae
Responsive to drought and salt stress
Responsive to water flow between the pollen and stigma
papillae
97%
BrPIP2;2a Bra023102
BrPIP2;2b
R. sativus
Musa acuminata
R. sativus
R. sativus
G. hirsutum
P. trichocarpa x P.
deltoides
Juglans regia
R. sativus
Unpublished
Responsive to drought and salt stress
Responsive to high salinity conditions
Regulated in an organ- and tissue-specific manner, water
transport in plant body during growth and development
Responsive to root development and in stresses (NaCl,
cold, PEG).
(13)
(6)
(12)
(17)
(12)
(6)
(12)
(18)
(12)
(6)
Unpublished
Responsive to water transport between xylem parenchyma
(17)
cells and embolized vessels
Regulated in an organ- and tissue-specific manner
(12)
Bra006650
BrPIP2;4c
Bra002462
BrPIP2;5a Bra007100
BrPIP2;5b Bra003196
BrPIP2;6
Bra000111
Bra034675
AAV69744
(PAQ2)
Aquaporin
99%
6e-172
82%
Vitis vinifera
NP200874
Aquaporin PIP2;4
99%
1e-163
83%
A. thaliana
AAV69744
Aquaporin PIP2
100%
9e-151
77%
XP002876271
PIP2_5/PIP2D
100%
AAV69744
Aquaporin
100%
9e-170
83%
XP002876271
PIP2;5/PIP2D
100%
0
92%
AAV69744
Aquaporin
100%
5e-168
82%
AEQ29857
Aquaporin PIP2
97%
3e-160
78%
AAV69744
ACB42441
Aquaporin
Aquaporin PIP2;4
0
94%
97%
3e-160
79%
100%
6e-179
89%
BrPIP2;7a
BrPIP2;7b
BrPIP2;7c
AFB83067
Plasma intrinsic protein PIP2.1
100%
2e-178
89%
NP001267957
Aquaporin PIP 2;2
100%
0
88%
Bra011585
AFB83067
Bra017697
AAG30607
AAB65787
Plasma intrinsic protein PIP2.1
100%
0.0
89%
aquaporin
Plasma membrane intrinsic protein
100%
100%
0
0.0
95%
95%
Malus prunifolia
A. lyrata subsp. lyrata
V. vinifera
A. lyrata subsp. lyrata
V. vinifera
M. prunifolia
V. vinifera
G. hirsutum
H. almeriense
Vitis vinifera
H. almeriense
B. oleracea
A. thaliana
Responsive to water transport and drought stress
(19)
Unpublished
Responsive to water transport and drought stress
(18)
Unpublished
Responsive to water transport and drought stress
(19)
Unpublished
Responsive to water transport and drought stress
(19)
Responsive to salt stress
(18)
Responsive to water transport and drought stress
(19)
Regulate their water channel activities and are required for
(20)
fibre development
Responsive to drought stress (morphophysiological
(21)
adaptation of this symbiosis to drought conditions)
Water transport and drought stress responses
(19)
Responsive to drought conditions
(21)
Responsive to salt stress and ABA treatment
Unpublished
(8)
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