Download Supplementary table 2

Supplementary Table S2. List of
Arabidopsis
genes
differentially expressed in response to heat stress and
classified by protein function
A. Up-regulated protein protection/folding
AGI
Locus
Gene Product (TAIR Annotation)
At1g01470 late embryogenesis abundant protein, putative / LEA protein, putative,
similar to SP|P46518 Late embryogenesis abundant protein Lea14-A
{Gossypium hirsutum}; contains Pfam profile PF03168: Late
embryogenesis abundant protein
At1g01940 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein,
contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
At1g03860 prohibitin-like protein mRNA, complete cds
At1g07400 17.8 kDa class I heat shock protein (HSP17.8-CI), similar to 17.5 kDa
class I heat shock protein SP:P04793 from (Glycine max); contains
Pfam PF00011: Hsp20/alpha crystallin family
At1g11660 heat shock protein, putative, strong similarity to gb|Z70314 heat-shock
protein from Arabidopsis thaliana and is a member of the PF|00012
Hsp70 protein family
At1g11960 early-responsive to dehydration protein-related / ERD protein-related,
low similarity to ERD4 protein (Arabidopsis thaliana) GI:15375406
At1g13690 AtE1 - stimulates the ATPase activity of DnaK/DnaJ
At1g14980 Encodes mitochondrial-localized chaperonin 10 that complements the
E.coli groES mutant. Its mRNA is upregulated in response to heat shock
treatment and is expressed uniformly in various organs.
At1g16030 heat shock protein 70, putative / HSP70, putative, similar to heat shock
protein hsp70 GI:1771478 from (Pisum sativum)
At1g20440 dehydrin (COR47), identical to dehydrin COR47 (Cold-induced COR47
protein) (Arabidopsis thaliana) SWISS-PROT:P31168
At1g20450 dehydrin (ERD10), identical to dehydrin ERD10 (Low-temperatureinduced protein LTI45) (Arabidopsis thaliana) SWISS-PROT:P42759
At1g52560 26.5 kDa class I small heat shock protein-like (HSP26.5-P), contains
Pfam profile: PF00011 Hsp20/alpha crystallin family; identified in
Scharf, K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156),
identical to (17.6 kDa class I heat shock protein (HSP 17.6) (AA 1156)(SP:P13853) (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids
Res. 17 (19), 7995 (1989))
At1g54050 17.4 kDa class III heat shock protein (HSP17.4-CIII), contains Pfam
profile: PF00011 Hsp20/alpha crystallin family; identified as class CIII
in Scharf, K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
At1g56300 DNAJ heat shock N-terminal domain-containing protein, similar to
SP|Q9QYI7 DnaJ homolog subfamily B member 8 Mus musculus;
contains Pfam profile: PF00226: DnaJ domain
At1g59860 17.6 kDa class I heat shock protein (HSP17.6A-CI), similar to 17.5 kDa
class I heat shock protein SP:P04793 from (Glycine max)
At1g59980 DNAJ heat shock N-terminal domain-containing protein, similar to
At1g71000
At1g74310
At1g79920
At1g79930
At2g04030
At2g25110
At2g25140
At2g26140
At2g26150
At2g29500
At2g32120
At2g32920
At3g04340
At3g07770
At3g08970
At3g09440
At3g09700
Altered Response to Gravity (Arabidopsis thaliana) GI:4249662;
contains Pfam profile PF00226 DnaJ domain
DNAJ heat shock N-terminal domain-containing protein, similar to
SP|O35723 DnaJ homolog subfamily B member 3 Mus musculus,
SP|Q9QYI7 DnaJ homolog subfamily B member 8 Mus musculus;
contains Pfam profile PF00226 DnaJ domain
heat shock protein 101 (HSP101), identical to heat shock protein 101
GI:6715468 GB:AAF26423 from (Arabidopsis thaliana)
heat shock protein 70, putative / HSP70, putative, contains Pfam profile:
PF00012 Heat shock hsp70 proteins; similar to heat-shock proteins
GB:CAA94389, GB:AAD55461 (Arabidopsis thaliana)
heat shock protein, putative, contains Pfam profile: PF00012 Heat shock
hsp70 proteins; similar to heat-shock proteins GB:CAA94389,
GB:AAD55461 (Arabidopsis thaliana)
heat shock protein, putative, strong similarity to heat shock protein
(Arabidopsis thaliana) GI:1906830; contains Pfam profiles PF02518:
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
MIR domain-containing protein, similar to SP|Q99470 Stromal cellderived factor 2 precursor (SDF-2) {Homo sapiens}; contains Pfam
profile PF02815: MIR domain
heat shock protein 100, putative / HSP100, putative / heat shock protein
clpB, putative / HSP100/ClpB, putative, similar to HSP100/ClpB
GI:9651530 (Phaseolus lunatus)
encodes an FtsH protease that is localized to the mitochondrion
heat shock transcription factor family protein, contains Pfam profile:
PF00447 HSF-type DNA-binding domain
17.6 kDa class I small heat shock protein (HSP17.6B-CI), contains Pfam
PF00011: Hsp20/alpha crystallin family; identified in Scharf, K-D., et
al, Cell Stress & Chaperones (2001) 6: 225-237.
heat shock protein 70 family protein / HSP70 family protein, similar to
SP|P22953 Heat shock cognate 70 kDa protein 1 (Hsc70.1)
{Arabidopsis thaliana}; contains InterPro accession IPR001023: Heat
shock protein Hsp70
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of
a multigene family within the thioredoxin (TRX) superfamily.
FtsH protease family protein, similar to chloroplast FtsH protease
(Arabidopsis thaliana) GI:1483215; contains Pfam profiles PF01434:
Peptidase family M41, PF00004: ATPase AAA family
heat shock protein-related, strong similarity to heat-shock protein
(Secale cereale) GI:556673; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00183: Hsp90 protein
DNAJ heat shock N-terminal domain-containing protein, low similarity
to PIR|A47079|A47079 heat shock protein dnaJ - Lactococcus lactis;
contains Pfam profile PF00226 DnaJ domain
heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3), identical to
SP|O65719 Heat shock cognate 70 kDa protein 3 (Hsc70.3)
{Arabidopsis thaliana}
DNAJ heat shock N-terminal domain-containing protein, contains Pfam
profile PF00226 DnaJ domain; similar to a region of DNAJ domain-
At3g12580
At3g13310
At3g13470
At3g14200
At3g18190
At3g20560
At3g27280
At3g44110
At3g46230
At3g51910
At3g63350
At4g10250
At4g11660
At4g16660
At4g22670
At4g24190
At4g24280
At4g25200
At4g26780
containing protein MCJ GB:AAD38506
heat shock protein 70, putative / HSP70, putative, strong similarity to
heat shock protein GI:425194 (Spinacia oleracea)
DNAJ heat shock N-terminal domain-containing protein, similar to J11
protein (Arabidopsis thaliana) GI:9843641; contains Pfam profile:
PF00226 DnaJ domain
chaperonin, putative, similar SWISS-PROT:P21240- RuBisCO subunit
binding-protein beta subunit, chloroplast precursor (60 kDa chaperonin
beta subunit, CPN-60 beta) (Arabidopsis thaliana); contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
DNAJ heat shock N-terminal domain-containing protein, low similarity
to SP|O75190|DJB6_HUMAN DnaJ homolog subfamily B member 6
(Heat shock protein J2) {Homo sapiens}; contains Pfam profile
PF00226 DnaJ domain
chaperonin, putative, similar to SWISS-PROT:P50991- T-complex
protein 1, delta subunit (TCP-1-delta) (Homo sapiens); contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of
a multigene family within the thioredoxin (TRX) superfamily.
prohibitin, putative, strong similarity to prohibitin (Arabidopsis thaliana)
GI:1946331; contains Pfam profile PF01145: SPFH domain / Band 7
family
DNAJ heat shock protein, putative (J3), identical to AtJ3 (Arabidopsis
thaliana) GI:2641638, strong similarity to several plant DnaJ proteins
from PGR; contains Pfam profiles PF00226 DnaJ domain, PF00684
DnaJ central domain (4 repeats), PF01556 DnaJ C ter
17.4 kDa class I heat shock protein (HSP17.4-CI), identical to 17.4 kDa
class I heat shock protein SP:P19036 from (Arabidopsis thaliana)
member of Heat Stress Transcription Factor (Hsf) family
member of Heat Stress Transcription Factor (Hsf) family
22.0 kDa ER small heat shock protein (HSP22.0-ER), identical to
endomembrane-localized small heat shock protein GI:511795 from
(Arabidopsis thaliana)
heat shock factor protein 7 (HSF7) / heat shock transcription factor 7
(HSTF7), identical to heat shock factor protein 7 (HSF7) SP:Q9T0D3
from (Arabidopsis thaliana)
heat shock protein 70, putative / HSP70, putative
tetratricopeptide repeat (TPR)-containing protein, similar to Hsc70interacting protein (Hip) from {Homo sapiens} SP|P50502, {Rattus
norvegicus} SP|P50503; contains Pfam profile PF00515:
tetratricopeptide repeat (TPR) domain
shepherd protein (SHD) / clavata formation protein, putative, nearly
identical to SHEPHERD (Arabidopsis thaliana) GI:19570872; contains
Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00183: Hsp90 protein
heat shock protein 70, putative / HSP70, putative, strong similarity to
heat shock protein 70 (Arabidopsis thaliana) GI:6746592; similar to heat
shock 70 protein - Spinacia oleracea,PID:g2654208
23.6 kDa mitochondrial small heat shock protein (HSP23.6-M), contains
Pfam profile PF00011: Hsp20/alpha crystallin family
co-chaperone grpE family protein, similar to chaperone GrpE type 2
At4g27670
At4g28480
At4g36990
At5g03160
At5g12020
At5g12030
At5g15450
At5g22060
At5g28540
At5g37670
At5g49910
At5g56000
At5g56010
At5g56030
At5g57480
At5g59720
At5g62020
(Nicotiana tabacum) GI:3851640; contains Pfam profile PF01025: cochaperone GrpE
25.3 kDa small heat shock protein, chloroplast precursor (HSP25.3-P),
identical to small heat shock protein, chloroplast precursor SP:P31170
from (Arabidopsis thaliana); identified in Scharf, K-D., et al,Cell Stress
& Chaperones (2001) 6: 225-237.
DNAJ heat shock family protein, contains Pfam profile PF00226: DnaJ
domain; ; similar to DnaJ homolog subfamily B member 1 (Heat shock
40 kDa protein 1) (Heat shock protein 40) (HSP40) (DnaJ protein
homolog 1) (HDJ-1) (Swiss-Prot:P25685) (Homo sapiens) an
heat shock factor protein 4 (HSF4) / heat shock transcription factor 4
(HSTF4), identical to heat shock transcription factor 4 (HSF4)
SP:Q96320 from (Arabidopsis thaliana)
DNAJ heat shock N-terminal domain-containing protein, similar to P58
protein, Bos primigenius taurus, PIR:A56534; similar to p58
(GI:1353270) {Homo sapiens}; contains Pfam PF00226: DnaJ domain;
contains Pfam PF00515: TPR Domain
17.6 kDa class II heat shock protein (HSP17.6-CII), identical to 17.6
kDa class II heat shock protein SP:P29830 from (Arabidopsis thaliana)
17.7 kDa class II heat shock protein 17.6A (HSP17.7-CII), identical to
heat shock protein 17.6A GI:3256075 from (Arabidopsis thaliana)
heat shock protein 100, putative / HSP100, putative / heat shock protein
clpB, putative / HSP100/ClpB, putative, similar to HSP100/ClpB
GI:9651530 (Phaseolus lunatus)
DNAJ heat shock protein, putative, strong similarity to SP|O60884 DnaJ
homolog subfamily A member 2 (Dnj3) Homo sapiens, several plant
DnaJ proteins from PGR; contains Pfam profiles PF00226 DnaJ domain,
PF00684 DnaJ central domain (4 repeats), PF01556 Dna
luminal binding protein 1 (BiP-1) (BP1), SWISS-PROT:Q9LKR3
PMID:8888624
15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI),
contains Pfam profile: PF00011 Hsp20/alpha crystallin family;
identified in Scharf, K-D., et al,Cell Stress & Chaperones (2001) 6: 225237.
heat shock protein 70 / HSP70 (HSC70-7), identical to heat shock
protein 70 (Arabidopsis thaliana) GI:6746592
heat shock protein 81-4 (HSP81-4), nearly identical to heat shock
protein hsp81.4 (Arabidopsis thaliana) GI:1906828; contains Pfam
profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00183: Hsp90 protein
a member of heat shock protein 90 (HSP90) gene family. Expressed in
all tissues and abundant in root apical meristem, pollen and tapetum.
Expresssion is NOT heat-induced but induced by IAA and NaCl.
heat shock protein 81-2 (HSP81-2), nearly identical to SP|P55737 Heat
shock protein 81-2 (HSP81-2) {Arabidopsis thaliana}
AAA-type ATPase family protein, contains Pfam profile: PF00004
ATPase family
18.1 kDa class I heat shock protein (HSP18.1-CI), identical to 18.2 kDa
class I heat shock protein (HSP 18.2) (SP:P19037)(Arabidopsis
thaliana); contains Pfam profile: PF00011 Hsp20/alpha crystallin family
heat shock factor protein, putative (HSF6) / heat shock transcription
factor, putative (HTSF6), identical to heat shock transcription factor 6
(HSF6) SP: Q9SCW4 from (Arabidopsis thaliana) ;contains Pfam
profile: PF00447 HSF-type DNA-binding domain
B. Up-regulated protein degradation
AGI
Gene Product(TAIR Annotation)
Locus
At1g14200 zinc finger (C3HC4-type RING finger) family protein, contains Pfam
profile: PF00097 zinc finger, C3HC4 type (RING finger)
At1g26800 zinc finger (C3HC4-type RING finger) family protein, contains Pfam
profile: PF00097 zinc finger, C3HC4 type (RING finger)
At1g29150 26S proteasome regulatory subunit, putative (RPN6), similar to 19S
proteosome subunit 9 GB:AAC34120 GI:3450889 from (Arabidopsis
thaliana). Specifically interacts with FUS6/COP11 via the C-terminal
domain FUS6/COP11 and associates with an ATPase subunit of the 19S
proteasome regulatory complex, AtS6A.
At1g61340 F-box family protein, contains Pfam PF00646: F-box domain; similar to
late embryogenesis abundant protein GI:1350540 from (Picea glauca)
At1g63840 zinc finger (C3HC4-type RING finger) family protein, similar to RINGH2 finger protein RHA1a (GI:3790554) (Arabidopsis thaliana)' similar
to BRH1 RING finger protein (Arabidopsis thaliana) GI:4689366;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
At2g14260 proline iminopeptidase, identical to GP:1710151:U72711
At2g17036 F-box family protein, ; similar to SKP1 interacting partner 2 (SKIP2)
TIGR_Ath1:At5g67250
At2g26140 encodes an FtsH protease that is localized to the mitochondrion
At2g27580 zinc finger (AN1-like) family protein, contains Pfam domains, PF01428:
AN1-like Zinc finger and PF01754: A20-like zinc finger
At2g29640 josephin family protein, contains Pfam domain PF02099: Josephin;
similar to Josephin-like protein (Swiss-Prot:O82391) (Arabidopsis
thaliana)
At2g41160 ubiquitin-associated (UBA)/TS-N domain-containing protein, contains
Pfam profile PF00627: UBA/TS-N domain
At2g45170 autophagy 8e (APG8e), identical to autophagy 8e (Arabidopsis thaliana)
GI:19912159; contains Pfam profile PF02991: Microtubule associated
protein 1A/1B, light chain 3
At3g04340 FtsH protease family protein, similar to chloroplast FtsH protease
(Arabidopsis thaliana) GI:1483215; contains Pfam profiles PF01434:
Peptidase family M41, PF00004: ATPase AAA family
At3g06380 F-box family protein / tubby family protein, similar to
phosphodiesterase (GI:467578) (Mus musculus); similar to C-terminal
half of tubby protein (A mutation in the tub gene causes maturity-onset
obesity, insulin resistance, and sensory deficits) (GB:P505
At3g08690 ubiquitin-conjugating enzyme 11 (UBC11), E2; identical to
gi:12643427, SP:P35134
At3g28210 zinc finger (AN1-like) family protein, contains Pfam profile: PF01428
AN1-like zinc finger
At3g47550 zinc finger (C3HC4-type RING finger) family protein, contains Pfam
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
At4g15420 PRLI-interacting factor K, nearly identical to PRLI-interacting factor K
(Arabidopsis thaliana) GI:11139266; contains Pfam profiles PF03152:
Ubiquitin fusion degradation protein UFD1, PF00096: Zinc finger,
C2H2 type
At4g21810 Der1-like family protein / degradation in the ER-like family protein,
contains Pfam profile: PF04511 Der1-like family
At4g23570 Closely related to SGT1B, may function in SCF(TIR1) mediated protein
degradation. Phosphatase-related, low similarity to phosphoprotein
phosphatase
At4g26340 F-box family protein, contains F-box domain Pfam:PF00646
At4g29330 Der1-like family protein / degradation in the ER-like family protein,
contains Pfam profile: PF04511 Der1-like family
At5g24770 vegetative storage protein 2 (VSP2), identical to SP|O82122 Vegetative
storage protein 2 precursor {Arabidopsis thaliana}; contains Pfam
profile PF03767: HAD superfamily (subfamily IIIB) phosphatase
At5g38895 zinc finger (C3HC4-type RING finger) family protein, contains Pfam
profile: PF00097 zinc finger, C3HC4 type (RING finger)
At5g41350 zinc finger (C3HC4-type RING finger) family protein, contains Pfam
profile: PF00097 zinc finger, C3HC4 type (RING finger)
At5g42300 ubiquitin family protein, contains INTERPRO:IPR000626 ubiquitin
domain
At5g47610 zinc finger (C3HC4-type RING finger) family protein, contains Pfam
profile: PF00097 zinc finger, C3HC4 type (RING finger)
At5g65450 ubiquitin carboxyl-terminal hydrolase family protein / zinc finger
(MYND type) family protein, similar to ubiquitin-specific protease 16
(UBP16) (Arabidopsis thaliana) GI:11993477; contains Pfam profiles
PF00443: Ubiquitin carboxyl-terminal hydrolase, PF0
At5g58787 zinc finger (C3HC4-type RING finger) family protein, similar to MTD2
(Medicago truncatula) GI:9294812; contains Pfam profile PF00097:
Zinc finger, C3HC4 type (RING finger)
C. Down-regulated protein degradation
AGI
Gene Product(TAIR Annotation)
Locus
At3g18490 aspartyl protease family protein, contains Pfam domain, PF00026:
eukaryotic aspartyl protease
At4g19670 zinc finger (C3HC4-type RING finger) family protein, contains a
Prosite:PS00518 Zinc finger, C3HC4 type (RING finger), signature and
Pfam domain PF01485: IBR domain
At4g30370 zinc finger (C3HC4-type RING finger) family protein, contains Pfam
profile: PF00097 zinc finger, C3HC4 type (RING finger)
D. Up-regulated abiotic stress responses
AGI
Gene Product(TAIR Annotation)
Locus
At1g01140 CBL-interacting protein kinase 9 (CIPK9), identical to CBL-interacting
At1g03860
At1g07890
At1g08570
At1g17190
At1g19570
At1g27730
At1g36060
At1g60740
At1g65970
At1g65980
At1g76080
At2g29420
At2g29450
At2g36450
At2g40300
At2g47730
At3g02960
protein kinase 9 (Arabidopsis thaliana) gi|13249117|gb|AAK16684;
contains Pfam profiles PF00069: Protein kinase domain and PF03822:
NAF domain; identical to cDNA CBL-interacting protei
prohibitin-like protein mRNA, complete cds
L-ascorbate peroxidase 1, cytosolic (APX1), identical to SP|Q05431 Lascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP) {Arabidopsis
thaliana}, L-ascorbate peroxidase (Arabidopsis thaliana)
gi|16173|emb|CAA42168; strong similarity to cytosolic ascorbate
thioredoxin family protein, contains Pfam profile: PF00085
Thioredoxin; similar to ESTs gb|T46281, gb|R83933, gb|N65879,
emb|F14466, gb|N96726, gb|AA042340, and emb|Z18150
Encodes glutathione transferase belonging to the tau class of GSTs.
Naming convention according to Wagner et al. (2002).
dehydroascorbate reductase, putative, similar to GB:BAA90672 from
(Oryza sativa)
zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc
finger protein (STZ), identical to salt-tolerance zinc finger protein
GB:CAA64820 GI:1565227 from (Arabidopsis thaliana); contains Pfam
domain, PF00096: Zinc finger, C2H2 type; identical
encodes a member of the DREB subfamily A-6 of ERF/AP2
transcription factor family. The protein contains one AP2 domain. There
are 8 members in this subfamily including RAP2.4.
peroxiredoxin type 2, putative, strong similarity to type 2 peroxiredoxin
(Brassica rapa subsp. pekinensis) GI:4928472; contains Pfam profile:
PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific
antioxidant) family
peroxiredoxin type 2, putative, strong similarity to type 2 peroxiredoxin
(Brassica rapa subsp. pekinensis) GI:4928472; contains Pfam profile:
PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific
antioxidant) family
peroxiredoxin type 2, putative, strong similarity to type 2 peroxiredoxin
(Brassica rapa subsp. pekinensis) GI:4928472; contains Pfam profile:
PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific
antioxidant) family
thioredoxin family protein, low similarity to thioredoxin (TRX)
(Fasciola hepatica) GI:6687568; contains Pfam profile PF00085:
Thioredoxin
Encodes glutathione transferase belonging to the tau class of GSTs.
Naming convention according to Wagner et al. (2002).
Encodes a member of the TAU glutathione S-transferase gene family.
Gene expression is induced by exposure to auxin, pathogen and
herbicides. Naming convention according to Wagner et al. (2002)
encodes a member of the DREB subfamily A-4 of ERF/AP2
transcription factor family. The protein contains one AP2 domain. There
are 17 members in this subfamily including TINY.
ferritin, putative, similar to ferritin subunit cowpea2 precursor (Vigna
unguiculata) GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Encodes glutathione transferase belonging to the phi class of GSTs.
Naming convention according to Wagner et al. (2002).
copper-binding protein-related, low similarity to copper homeostasis
factor gi:3168840 from Arabidopsis thaliana; contains Pfam profile
PF00403: Heavy-metal-associated domain
At3g03520 phosphoesterase family protein, low similarity to SP|P95246
Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium
tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family
At3g09640 L-ascorbate peroxidase 1b (APX1b), identical to ascorbate peroxidase
(Arabidopsis thaliana) gi|555576|emb|CAA56340;
At3g22370 alternative oxidase 1a, mitochondrial (AOX1A), identical to
GB:Q39219 (SP|Q39219) from (Arabidopsis thaliana)
At3g22840 Encodes an early light-inducable protein.
At3g27280 prohibitin, putative, strong similarity to prohibitin (Arabidopsis thaliana)
GI:1946331; contains Pfam profile PF01145: SPFH domain / Band 7
family
At4g04020 plastid-lipid associated protein PAP, putative / fibrillin, putative, strong
similarity to plastid-lipid associated proteins PAP1 GI:14248554, PAP2
GI:14248556 from (Brassica rapa), fibrillin (Brassica napus)
GI:4139097; contains Pfam profile PF04755: PAP
At4g15660 glutaredoxin family protein, contains INTERPRO Domain IPR002109,
Glutaredoxin (thioltransferase)
At4g15670 glutaredoxin family protein, contains INTERPRO Domain IPR002109,
Glutaredoxin (thioltransferase)
At4g15680 glutaredoxin family protein, contains INTERPRO Domain IPR002109,
Glutaredoxin (thioltransferase)
At4g15700 glutaredoxin family protein, contains INTERPRO Domain IPR002109,
Glutaredoxin (thioltransferase)
At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein, Pig3 Homo
sapiens, PID:G2754812; contains Pfam zinc-binding dehydrogenase
domain PF00107
At4g23100 glutamate-cysteine ligase / gamma-glutamylcysteine synthetase (GSH1),
identical to glutamate-cysteine ligase SP:P46309 from (Arabidopsis
thaliana); contains Pfam profile: PF04107 glutamate-cysteine ligase
family 2(GCS2). Two mRNA species are detected for
At4g23600 Coronotine induced gene belonging to the tyrosine aminotransferase
family but recent work proved that it functions as cystine lyase.
At4g27440 light-dependent NADPH:protochlorophyllide oxidoreductase B
At4g29670 thioredoxin family protein, contains Pfam profile PF00085: Thioredoxin
At5g05410 mRNA for DREB2A, complete cds
E. Down-regulated abiotic stress responses
AGI
Gene Product(TAIR Annotation)
Locus
At2g44940 encodes a member of the DREB subfamily A-4 of ERF/AP2
transcription factor family. The protein contains one AP2 domain. There
are 17 members in this subfamily including TINY.
At3g17510 CBL-interacting protein kinase 1 (CIPK1), identical to CBL-interacting
protein kinase 1 (Arabidopsis thaliana) gi|11066952|gb|AAG28776;
contains Pfam profiles PF00069: Protein kinase domain and PF03822:
NAF domain; identical to cDNA CBL-interacting protei
At3g43800 glutathione S-transferase, putative, glutathione transferase, papaya,
PIR:T09781
At4g26850 a gene encoding a novel protein is involved in ascorbate biosynthesis.
recessive mutation has a reduced amount of vitamin C, lower level of
At4g29720
At4g39330
At5g52300
At5g67180
non-photochemical quenching, and reduced rate of conversion of
violaxanthin to zeaxanthin in high light.
amine oxidase family protein, similar to polyamine oxidase isoform-2
(Homo sapiens) GI:16554963; contains Pfam profile PF01593: amine
oxidase, flavin-containing
mannitol dehydrogenase, putative, nearly identical to SP|P42734,
probable mannitol dehydrogenase
low-temperature-responsive 65 kD protein (LTI65) / desiccationresponsive protein 29B (RD29B), nearly identical to SP|Q04980 Lowtemperature-induced 65 kDa protein (Desiccation-responsive protein
29B) {Arabidopsis thaliana}
AP2 domain-containing transcription factor, putative, similar to
(SP:P47927) Floral homeotic protein APETALA2. (Mouse-ear cress)
{Arabidopsis thaliana}
F. Up-regulated compatible osmolytes
AGI
Gene Product(TAIR Annotation)
Locus
At1g56600 galactinol synthase, putative, similar to galactinol synthase, isoform
GolS-1 GI:5608497 from (Ajuga reptans)
At2g47180 galactinol synthase, putative, similar to galactinol synthase, isoform
GolS-1 GI:5608497 from (Ajuga reptans)
At4g26250 galactinol synthase, putative, similar to galactinol synthase, isoform
GolS-1 (Ajuga reptans) GI:5608497; contains Pfam profile: PF01501
glycosyl transferase family 8
At5g20250 raffinose synthase family protein / seed imbibition protein, putative
(din10), similar to seed imbibition protein GB:AAA32975 GI:167100
from (Hordeum vulgare); contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinos
G. Down-regulated compatible osmolytes
AGI
Locus
At2g39800
At3g55610
Gene Product(TAIR Annotation)
delta 1-pyrroline-5-carboxylate synthetase A / P5CS A (P5CS1),
identical to SP:P54887:P5C1_ARATH
delta 1-pyrroline-5-carboxylate synthetase B / P5CS B (P5CS2),
identical to SP|P54888
H. Up-regulated cell wall synthesis
AGI
Gene Product(TAIR Annotation)
Locus
At1g27090 glycine-rich protein
At2g18660 expansin family protein (EXPR3), identical to Expansin-related protein
At2g22240
At2g33590
At4g02980
At4g03210
At4g08230
At4g18280
At4g22740
At4g30460
At5g01990
At5g54690
At5g56870
At5g61510
At5g62350
At5g62360
3 precursor (Ath-ExpGamma-1.2) (Swiss-Prot:Q9ZV52) (Arabidopsis
thaliana); contains Prosite PS00092: N-6 Adenine-specific DNA
methylases signature;
inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate
synthase 2 / MI-1-P synthase 2 / IPS 2, identical to SP|Q38862 Myoinositol-1-phosphate synthase isozyme 2 (EC 5.5.1.4) (MI-1-P synthase
2) (IPS 2) {Arabidopsis thaliana}
cinnamoyl-CoA reductase family, similar to cinnamoyl-CoA reductase
from Pinus taeda (GI:17978649), Eucalyptus gunnii (GI:2058311)
auxin binding protein involved in cell elongation and cell division
(ABP1)
encodes a member of xyloglucan endotransglucosylase/hydrolases
(XTHs) that catalyze the cleavage and molecular grafting of xyloglucan
chains function in loosening and rearrangement of the cell wall. Gene is
expressed in shoot apex region, flower buds, flo
glycine-rich protein
glycine-rich cell wall protein-related, glycine-rich protein 1.0 precursor,
Phaseolus vulgaris, PIR1:S01821
glycine-rich protein
glycine-rich protein
auxin efflux carrier family protein, contains auxin efflux carrier domain,
Pfam:PF03547
glycosyl transferase family 8 protein, contains Pfam profile: PF01501
glycosyl transferase family 8
beta-galactosidase, putative / lactase, putative, similar to betagalactosidase precursor GI:3869280 from (Carica papaya)
NADP-dependent oxidoreductase, putative, similar to zeta-crystallin
homolog TED2 from Zinnia elegans (gi:531096); contains Pfam zincbinding dehydrogenase domain PF00107
invertase/pectin methylesterase inhibitor family protein / DC 1.2
homolog (FL5-2I22), similar to SP|Q42534 Pectinesterase 2 precursor
(EC 3.1.1.11) (Pectin methylesterase 2) (PE 2) {Arabidopsis thaliana};
contains Pfam profile PF04043: Plant invertase/pec
invertase/pectin methylesterase inhibitor family protein, similar to
pectinesterase from Arabidosis thaliana SP|Q42534, Lycopersicon
esculentum SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
I. Down-regulated cell wall synthesis
AGI
Gene Product(TAIR Annotation)
Locus
At1g02205 CER1 protein, identical to maize gl1 homolog (glossy1 locus)
GI:1209703 and CER1 GI:1199467 from (Arabidopsis thaliana)
At1g51500 Encodes an ABC transporter involved in cuticular wax biosynthesis.
Lines carrying recessive mutations in this locus have weakly glaucous
stem surface, and relative elevated seconary alcohols and ketones.
At1g54970 encodes a proline-rich protein that is specifically expressed in the root.
At1g64390 endo-1,4-beta-glucanase, putative / cellulase, putative, similar to endobeta-1,4-glucanase GI:4972236 from (Fragaria x ananassa) (Plant Mol.
Biol. 40, 323-332 (1999))
At1g67730 b-keto acyl reductase, putative (GLOSSY8), similar to b-keto acyl
reductase GI:2586127 from (Hordeum vulgare)
At1g69530 expansin, putative (EXP1), identical to expansin (At-EXP1)
(Arabidopsis thaliana) GI:1041702; alpha-expansin gene family,
PMID:11641069
At1g78570 NAD-dependent epimerase/dehydratase family protein, similar to
dTDP-glucose 4,6-dehydratase from Aneurinibacillus thermoaerophilus
GI:16357461, RmlB from Leptospira borgpetersenii GI:4234803;
contains Pfam profile PF01370 NAD dependent epimerase/dehydrata
At2g10940 protease inhibitor/seed storage/lipid transfer protein (LTP) family
protein, similar to proline-rich cell wall protein (Medicago sativa)
GI:3818416; contains Pfam profile PF00234 Protease inhibitor/seed
storage/LTP family
At2g15880 leucine-rich repeat family protein / extensin family protein, similar to
extensin-like protein (Lycopersicon esculentum)
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
At2g17500 auxin efflux carrier family protein, contains auxin efflux carrier domain,
Pfam:PF03547
At2g20610 Confers auxin overproduction. Mutants have an overproliferation of
lateral roots.
At2g27380 proline-rich family protein, contains proline-rich extensin domains,
INTERPRO:IPR002965
At2g28470 beta-galactosidase, putative / lactase, putative, similar to Betagalactosidase precursor SP:P48980 from (Lycopersicon esculentum)
At2g36870 xyloglucan:xyloglucosyl transferase, putative / xyloglucan
endotransglycosylase, putative / endo-xyloglucan transferase, putative,
similar to cellulase (xyloglucan endo-transglycosylase) GI:311835 from
(Tropaeolum majus)
At2g36880 S-adenosylmethionine synthetase, putative, similar to Sadenosylmethionine synthetase 3 (Methionine adenosyltransferase 3,
AdoMet synthetase 3) (Lycopersicon esculentum) SWISSPROT:P43282
At2g37040 phenylalanine ammonia-lyase 1 (PAL1), nearly identical to SP|P35510
At2g40610 expansin, putative (EXP8), similar to expansin 2 GI:7025493 from
(Zinnia elegans); alpha-expansin gene family, PMID:11641069
At2g40890 cytochrome P450 98A3, putative (CYP98A3), identical to Cytochrome
P450 98A3 (SP|O22203) (Arabidopsis thaliana); similar to gi:17978651
from Pinus taeda
At3g06510 glycosyl hydrolase family 1 protein, similar to Beta-galactosidase
(SP:P22498) (Sulfolobus solfataricus}; almost identical to betaglucosidase GB:AAF23823 GI:6685165 from (Arabidopsis thaliana)
At3g19450 cinnamyl-alcohol dehydrogenase (CAD), identical to SP|P48523
Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) (Arabidopsis
thaliana)
At3g22120 protease inhibitor/seed storage/lipid transfer protein (LTP) family
protein, similar to SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich
protein Lycopersicon esculentum, proline-rich cell wall protein
(Medicago sativa) GI:3818416; contains Pfam profile PF00234
At3g23820 NAD-dependent epimerase/dehydratase family protein, similar to
At3g44300
At3g44990
At3g54590
At4g08380
At4g08410
At4g16260
At4g24780
At4g31590
At4g36220
At4g38770
At4g39800
At5g20630
nucleotide sugar epimerase from Vibrio vulnificus GI:3093975
(PID:g3093975), WbnF (Escherichia coli) GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile: PF01370
nitrilase 2 (NIT2), identical to SP|P32962 Nitrilase 2 (EC 3.5.5.1)
{Arabidopsis thaliana}
xyloglucan:xyloglucosyl transferase, putative / xyloglucan
endotransglycosylase, putative / endo-xyloglucan transferase, putative
proline-rich extensin-like family protein, contains proline-rich extensin
domains, INTERPRO:IPR002965
proline-rich extensin-like family protein, contains proline-rich extensin
domains, INTERPRO:IPR002965
proline-rich extensin-like family protein, contains proline-rich extensin
domains, INTERPRO:IPR002965;
glycosyl hydrolase family 17 protein, similar to glucan endo-1,3-betaglucosidase, basic vacuolar isoform precursor SP:P52407 from (Hevea
brasiliensis)
pectate lyase family protein, similar to pectate lyase GP:14289169 from
(Salix gilgiana)
glycosyl transferase family 2 protein, similar to cellulose synthase from
Agrobacterium tumeficiens (gi:710492) and Agrobacterium radiobacter
(gi:710493); contains Pfam glycosyl transferase, group 2 family protein
domain PF00535
encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.
proline-rich family protein (PRP4), similar to proline-rich protein
(Arabidopsis thaliana) gi|6782442|gb|AAF28388; contains proline-rich
extensin domains, INTERPRO:IPR002965
inositol-3-phosphate synthase isozyme 1 / myo-inositol-1-phosphate
synthase 1 / MI-1-P synthase 1 / IPS 1, identical to SP|P42801 Inositol3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) {Arab
germin-like protein (GER3), identical to germin-like protein subfamily 3
member 3 (SP|P94072)
J. Up-regulated energy metabolism
AGI
Gene Product(TAIR Annotation)
Locus
At1g35580 beta-fructofuranosidase, putative / invertase, putative / saccharase,
putative / beta-fructosidase, putative, similar to neutral invertase
(Daucus carota) GI:4200165; contains Pfam profile PF04853: Plant
neutral invertase
At1g51420 sucrose-phosphatase, putative, similar to sucrose-phosphatase (SPP1)
(Arabidopsis thaliana) GI:11127757; contains Pfam profile PF05116:
Sucrose-6F-phosphate phosphohydrolase
At1g67070 phosphomannose isomerase, putative (DIN9), contains Pfam profile:
PF01238 phosphomannose isomerase type I ;similar to phosphomannose
isomerase GI:10834550 from (Arabidopsis thaliana); identical to cDNA
phosphomannose isomerase (din9) partial cds GI:108345
At1g79550 cytosolic phosphoglycerate kinase (PGK) mRNA, complete cds
At2g04270 glycoside hydrolase starch-binding domain-containing protein, contains
Pfam profile: PF00686 starch binding domain
At2g05260 lipase class 3 family protein, contains Pfam profile PF01764: Lipase
At2g17340 pantothenate kinase-related, contains Pfam domain, PF01937: Protein of
unknown function; supported by tandem duplication of pantothenate
kinase -related protein (TIGR_Ath1:At2g17320) (Arabidopsis thaliana)
At2g27690 cytochrome P450, putative, similar to Cytochrome P450 94A1 (P450dependent fatty acid omega-hydroxylase) (SP:O81117) {Vicia sativa};
contains Pfam profile: PF00067 cytochrome P450; supported by cDNA:
gi_13877668
At2g34590 transketolase family protein, similar to SP|O66113 Pyruvate
dehydrogenase E1 component, beta subunit (EC 1.2.4.1). {Zymomonas
mobilis}; contains Pfam profiles PF02779: Transketolase, pyridine
binding domain, PF02780: Transketolase, C-terminal domain
At2g36460 fructose-bisphosphate aldolase, putative, similar to PIR|S65073
fructose-bisphosphate aldolase (EC 4.1.2.13) isoenzyme C-1, cytosolic
(Oryza sativa); contains Pfam profile PF00274 Fructose-bisphosphate
aldolase class-I
At3g08590 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative
/ phosphoglyceromutase, putative, strong similarity to SP|Q42908 2,3bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystal
At3g10640 SNF7 family protein, contains Pfam domain, PF03357: SNF7 family
At3g48530 CBS domain-containing protein, low similarity to SP|Q9UGI9 5'-AMPactivated protein kinase, gamma-3 subunit (AMPK gamma-3 chain)
(AMPK gamma3) {Homo sapiens}; contains Pfam profile PF00571:
CBS domain
At3g51520 diacylglycerol acyltransferase family, contains Pfam PF03982:
Diacylglycerol acyltransferase
At3g58490 phosphatidic acid phosphatase family protein / PAP2 family protein,
similar to sphingosine-1-phosphate phosphohydrolase from (Mus
musculus) GI:9623190, (Homo sapiens) GI:23345324; contains Pfam
profile PF01569: PAP2 superfamily
At4g26270 phosphofructokinase family protein, similar to phosphofructokinase
(Amycolatopsis methanolica) GI:17432243; contains Pfam profile
PF00365: Phosphofructokinase
At5g04750 F1F0-ATPase inhibitor protein, putative, similar to F1F0-ATPase
inhibitor protein (Oryza sativa (japonica cultivar-group))
gi|5106371|dbj|BAA81661
At5g40650 succinate dehydrogenase, iron-sulphur subunit, mitochondrial (sdh2-2),
nearly identical to mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-2) (gi:12049600) from Arabidopsis thaliana
At5g56630 phosphofructokinase family protein, similar to phosphofructokinase
(Amycolatopsis methanolica) GI:17432243; contains Pfam profile
PF00365: Phosphofructokinase
K. Down-regulated energy metabolism
AGI
Gene Product(TAIR Annotation)
Locus
At1g09780 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative
/ phosphoglyceromutase, putative, strong similarity to SP|Q42908 2,3bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
At1g13440
At1g32060
At1g32900
At1g36160
At3g60750
At4g10120
At4g22570
At5g35170
At5g46110
At5g47560
(Phosphoglyceromutase) {Mesembryanthemum crystal
glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NADdependent glyceraldehyde-3-phosphate dehydrogenase, putative, very
strong similarity to SP|P25858 Glyceraldehyde 3-phosphate
dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana};
phosphoribulokinase (PRK) / phosphopentokinase, nearly identical to
SP|P25697 Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19)
(Phosphopentokinase) (PRKASE) (PRK) {Arabidopsis thaliana}
starch synthase, putative, similar to starch synthase SP:Q42857 from
(Ipomoea batatas)
Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell
divisions which are enhanced by cytokinins. Mutant also has aberrant
organization of the apical region in the embryo and abnormal root and
shoot development.
transketolase, putative, strong similarity to transketolase 1 (Capsicum
annuum) GI:3559814; contains Pfam profiles PF02779: Transketolase,
pyridine binding domain, PF02780: Transketolase, C-terminal domain,
PF00456: Transketolase, thiamine diphosphate bin
sucrose-phosphate synthase, putative, similar to sucrose-phosphate
synthase, Zea mays, PIR2:JQ1329; contains non-consensus (GC) donor
splice site at intron 4
adenine phosphoribosyltransferase, putative, strong similarity to
Adenine phosphoribosyltransferase (Hordeum vulgare subsp. vulgare)
GI:9711921; contains Pfam profile PF00156: Phosphoribosyl transferase
domain
adenylate kinase family protein, contains Pfam profile: PF00406
adenylate kinase
mutant has Altered acclimation responses; Chloroplast Triose Phosphate
Translocator
sodium/dicarboxylate cotransporter, putative, similar to SWISSPROT:Q13183 renal sodium/dicarboxylate cotransporter
(Human){Homo sapiens}
L. Down-regulated mineral assimilation
AGI
Gene Product(TAIR Annotation)
Locus
At1g37130 nitrate reductase 2 (NR2), identical to SP|P11035 Nitrate reductase 2
(formerly EC 1.6.6.1) (NR2) {Arabidopsis thaliana}
At1g62180 Encodes a protein disulfide isomerase-like (PDIL) protein, a member of
a multigene family within the thioredoxin (TRX) superfamily. This
protein also belongs to the adenosine 5'-phosphosulfate reductase-like
(APRL) group.
At2g14750 adenylylsulfate kinase 1 (AKN1), identical to adenylylsulfate kinase 1,
chloroplast precursor (APS kinase, Adenosine-5'phosphosulfate kinase,
ATP adenosine-5'- phosphosulfate 3'-phosphotransferase) (Arabidopsis
thaliana) SWISS-PROT:Q43295
At2g15620 ferredoxin--nitrite reductase, putative, strong similarity to ferredoxin-nitrite reductase (Nicotiana tabacum) GI:19893; contains Pfam profiles
PF03460: Nitrite/Sulfite reductase ferredoxin-like half domain,
At3g21670
At4g04610
At4g39940
At5g65010
PF01077: Nitrite and sulphite reductase 4Fe-4S
nitrate transporter (NTP3), nearly identical to nitrate transporter
(Arabidopsis thaliana) GI:4490323; contains Pfam profile: PF00854
POT family
5'-adenylylsulfate reductase (APR1) / PAPS reductase homolog
(PRH19), identical to 5'-adenylylsulfate reductase (Arabidopsis thaliana)
GI:2738756; identical to cDNA PAPS reductase homolog (PRH19)
GI:1710111
adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete
asparagine synthetase (ASN2) mRNA, complete cds
M. Up-regulated transcription
AGI
Gene Product(TAIR Annotation)
Locus
At1g01720 belongs to a large family of putative transcriptional activators with NAC
domain. Transcript level increases in response to wounding.
At1g09950 transcription factor-related, low similarity to tumor-related protein
(Nicotiana glauca x Nicotiana langsdorffii) GI:688423, SP|P23923
Transcription factor HBP-1b {Triticum aestivum}
At1g18330 myb family transcription factor, contains Pfam profile: PF00249 myblike DNA-binding domain EARLY-PHYTOCHROME-RESPONSIVE1
At1g27730 zinc finger (C2H2 type) family protein (ZAT10) / salt-tolerance zinc
finger protein (STZ), identical to salt-tolerance zinc finger protein
GB:CAA64820 GI:1565227 from (Arabidopsis thaliana); contains Pfam
domain, PF00096: Zinc finger, C2H2 type; identical
At1g36060 encodes a member of the DREB subfamily A-6 of ERF/AP2
transcription factor family. The protein contains one AP2 domain. There
are 8 members in this subfamily including RAP2.4.
At1g49130 zinc finger (B-box type) family protein, contains similarity to zinc finger
protein GI:3618318 from (Oryza sativa)
At1g55300 TATA-binding protein-associated factor TAFII55 family protein,
contains Pfam profile: PF04658 TAFII55 protein conserved region
At1g56170 Encodes a protein with similarity to a subunit of the CCAAT promoter
motif binding complex of yeast.One of two members of this class
(HAP5B) and expressed in vegetative and reproductive tissues. Putative
transcription factor.
At1g62700 no apical meristem (NAM) family protein, similar to NAC2
(GI:6456751) (Arabidopsis thaliana); contains Pfam PF02365 : No
apical meristem (NAM) protein
At1g76880 trihelix DNA-binding protein, putative, similar to DNA-binding protein
DF1 (Pisum sativum) GI:13646986
At2g14880 SWIB complex BAF60b domain-containing protein, contains Pfam
profile PF02201: BAF60b domain of the SWIB complex
At2g19640 SET domain-containing protein, contains Pfam profile PF00856: SET
domain
At2g24790 zinc finger (B-box type) family protein
At2g26150 heat shock transcription factor family protein, contains Pfam profile:
PF00447 HSF-type DNA-binding domain
At2g28200 zinc finger (C2H2 type) family protein, contains Pfam domain,
At2g36450
At2g40260
At2g43140
At3g10820
At3g12050
At3g15210
At3g19500
At3g24500
At3g44240
At3g46080
At3g51910
At3g63350
At4g00270
At4g01120
At4g11660
At4g17800
At4g36990
At5g03740
At5g04410
At5g05410
At5g11340
PF00096: Zinc finger, C2H2 type
encodes a member of the DREB subfamily A-4 of ERF/AP2
transcription factor family. The protein contains one AP2 domain. There
are 17 members in this subfamily including TINY.
myb family transcription factor, contains Pfam profile: PF00249 myblike DNA-binding domain
basic helix-loop-helix (bHLH) family protein, contains Pfam profile
PF00010: Helix-loop-helix DNA-binding domain
transcription elongation factor-related, low similarity to transcription
elongation factor TFIIS.h (Mus musculus) GI:3288547
Aha1 domain-containing protein, contains Pfam PF05146: Aha1
domain; similar to Protein C14orf3 (HSPC322) (Swiss-Prot:O95433)
(Homo sapiens)
encodes a member of the ERF (ethylene response factor) subfamily B-1
of ERF/AP2 transcription factor family (ATERF-4). The protein
contains one AP2 domain. There are 15 members in this subfamily
including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
ethylene-responsive protein -related, contains similarity to ethyleneinducible ER33 protein (Lycopersicon esculentum)
gi|5669656|gb|AAD46413
ethylene-responsive transcriptional coactivator, putative, similar to
ethylene-responsive transcriptional coactivator (Lycopersicon
esculentum) gi|5669634|gb|AAD46402
CCR4-NOT transcription complex protein, putative, similar to SWISSPROT:Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4associated factor 1, (CAF1) (Mus musculus)
zinc finger (C2H2 type) family protein, contains zinc finger, C2H2 type,
domain, PROSITE:PS00028
member of Heat Stress Transcription Factor (Hsf) family
member of Heat Stress Transcription Factor (Hsf) family
DNA-binding storekeeper protein-related, contains similarity to
storekeeper protein (Solanum tuberosum) gi|14268476|emb|CAC39398;
contains PF04504: Protein of unknown function, DUF573
G-box binding factor 2 (GBF2), identical to G-box binding factor 2
(GBF2) SP:P42775 from (Arabidopsis thaliana);contains Pfam profile:
PF00170 bZIP transcription factor
heat shock factor protein 7 (HSF7) / heat shock transcription factor 7
(HSTF7), identical to heat shock factor protein 7 (HSF7) SP:Q9T0D3
from (Arabidopsis thaliana)
DNA-binding protein-related, contains Pfam domain PF03479: Domain
of unknown function (DUF296), found in AT-hook motifs
Pfam:PF02178
heat shock factor protein 4 (HSF4) / heat shock transcription factor 4
(HSTF4), identical to heat shock transcription factor 4 (HSF4)
SP:Q96320 from (Arabidopsis thaliana)
zinc finger (C2H2 type) family protein, contains Pfam domain,
PF00096: Zinc finger, C2H2 type
NAC2 (NAC2) mRNA, complete cds
mRNA for DREB2A, complete cds
GCN5-related N-acetyltransferase (GNAT) family protein, low
similarity to SP|Q03503 L-A virus GAG protein N-acetyltransferase
At5g37350
At5g51590
At5g62020
At5g63330
(EC 2.3.1.-) {Saccharomyces cerevisiae}; contains Pfam profile
PF00583: acetyltransferase, GNAT family
RIO1 family protein, similar to extragenic suppressor of the bimD6
mutation (SUDD) (Emericella nidulans) GI:2338556, RIO1
(Saccharomyces cerevisiae) GI:1359602; contains Pfam profile
PF01163: RIO1 family
DNA-binding protein-related, contains Pfam domain PF03479: Domain
of unknown function (DUF296), found in AT-hook motifs
Pfam:PF02178
heat shock factor protein, putative (HSF6) / heat shock transcription
factor, putative (HTSF6), identical to heat shock transcription factor 6
(HSF6) SP: Q9SCW4 from (Arabidopsis thaliana) ;contains Pfam
profile: PF00447 HSF-type DNA-binding domain
DNA-binding bromodomain-containing protein, contains bromodomain,
INTERPRO:IPR001487
N. Down-regulated transcription
AGI
Gene Product(TAIR Annotation)
Locus
At1g01060 myb family transcription factor, contains Pfam profile: PF00249 myblike DNA-binding domain; identical to cDNA LATE ELONGATED
HYPOCOTYL MYB transcription factor GI:3281845
At1g08000 zinc finger (GATA type) family protein, similar to PIR:T05288 from
(Arabidopsis thaliana)
At1g23380 homeobox transcription factor (KNAT6), nearly identical to
homeodomain transcription factor KNAT6 (KNAT6L) GI:15991302
(Arabidopsis thaliana), homeodomain transcription factor KNAT6
(KNAT6S) (Arabidopsis thaliana) GI:15991300
At1g27050 homeobox-leucine zipper family protein, contains Pfam profile:PF00046
Homeobox domain and Pfam profile:PF00076 RNA recognition motif
At1g71030 myb family transcription factor, similar to MybHv5 GI:19055 from
(Hordeum vulgare)
At1g78410 VQ motif-containing protein, contains PF05678: VQ motif
At2g28720 histone H2B, putative, strong similarity to histone H2B Arabidopsis
thaliana GI:2407802, Gossypium hirsutum SP|O22582; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
At2g41180 sigA-binding protein-related, low similarity to SigA binding protein
(Arabidopsis thaliana) GI:6980074; contains Pfam domain PF05678:
VQ motif
At2g44940 encodes a member of the DREB subfamily A-4 of ERF/AP2
transcription factor family. The protein contains one AP2 domain. There
are 17 members in this subfamily including TINY.
At3g02380 Zinc finger protein CONSTANS-LIKE 2 (COL2), identical to putative
flowering-time gene CONSTANS (COL2) GB:AAB67879 GI:1507699
SP:Q96502 (Arabidopsis thaliana)
At4g12050 DNA-binding protein-related, contains Pfam domain PF03479: Domain
At5g11430
At5g35970
At5g53950
At5g54230
At5g61420
At5g67180
of unknown function (DUF296), found in AT-hook motifs
Pfam:PF02178
transcription elongation factor-related, contains weak similarity to
transcription elongation factors
DNA-binding protein, putative, similar to SWISS-PROT:Q60560 DNAbinding protein SMUBP-2 (Immunoglobulin MU binding protein 2,
SMUBP-2) (Mesocricetus auratus)
no apical meristem (NAM) family protein, identical to no apical
meristem protein CUC2 (GI:1944132) (Arabidopsis thaliana); contains
Pfam PF02365: No apical meristem (NAM) domain;
putative transcription factor (MYB49) mRNA, complete cds
putative transcription factor (MYB28) mRNA, complete cds
AP2 domain-containing transcription factor, putative, similar to
(SP:P47927) Floral homeotic protein APETALA2. (Mouse-ear cress)
{Arabidopsis thaliana}
O. Up-regulated signal transduction
AGI
Gene Product(TAIR Annotation)
Locus
At1g01140 CBL-interacting protein kinase 9 (CIPK9), identical to CBL-interacting
protein kinase 9 (Arabidopsis thaliana) gi|13249117|gb|AAK16684;
contains Pfam profiles PF00069: Protein kinase domain and PF03822:
NAF domain; identical to cDNA CBL-interacting protei
At1g02090 COP9 signalosome complex subunit 7ii / CSN complex subunit 7ii
(CSN7) (COP15) / FUSCA protein (FUS5), FUSCA5, CSN7, COP15;
identical to CSN complex subunit 7ii (Arabidopsis thaliana)
GI:18056671, FUS5 protein of the COP9 complex GI:3288823;
identical to
At1g03860 prohibitin, putative, similar to SP|P24142 Prohibitin (B-cell receptor
associated protein 32) (BAP 32) {Rattus norvegicus}; contains Pfam
profile PF01145: SPFH domain / Band 7 family
At1g09070 C2 domain-containing protein / src2-like protein, putative, similar to
cold-regulated gene SRC2 (Glycine max) GI:2055230; contains Pfam
profile PF00168: C2 domain; identical to cDNA src2-like protein
GI:3426059
At1g21550 calcium-binding protein, putative, contains similarity to calcium-binding
protein GB:CAB63264 GI:6580549 from (Lotus japonicus)
At1g29740 leucine-rich repeat family protein / protein kinase family protein,
contains Pfam domains PF00560: Leucine Rich Repeat and PF00069:
Protein kinase domain
At1g30070 SGS domain-containing protein, similar to calcyclin binding protein
(Mus musculus) GI:3142331; contains Pfam profile PF05002: SGS
domain
At1g48270 encodes a protein similar to G-coupled receptor with 7 transmembrane
regions. Overexpression studies suggest this gene is involved in
dormancy and flowering. Reduction of expression results in decreased
sensitivity to cytokinin.
At1g49300 Ras-related GTP-binding protein, putative, contains Pfam profile:
At1g53730
At1g55330
At1g64460
At1g70810
At1g72520
At1g72660
At1g76650
At2g22240
At2g41100
At2g43290
At2g46240
At3g06380
At3g13520
At3g15680
At3g50480
At3g51780
At3g57880
At3g59410
PF00071 Ras family
leucine-rich repeat transmembrane protein kinase, putative, similar to
GI:3360289 from (Zea mays) (Plant Mol. Biol. 37 (5), 749-761 (1998))
arabinogalactan-protein (AGP21)
phosphatidylinositol 3- and 4-kinase family protein, contains Pfam
profile PF00454: Phosphatidylinositol 3- and 4-kinase
C2 domain-containing protein, similar to zinc finger and C2 domain
protein GI:9957238 from (Arabidopsis thaliana)
lipoxygenase, putative, similar to lipoxygenase gi:1495804 (Solanum
tuberosum), gi:1654140 (Lycopersicon esculentum), GB:CAB56692
(Arabidopsis thaliana)
developmentally regulated GTP-binding protein, putative, very strong
similarity to developmentally regulated GTP binding protein (DRG1)
(Arabidopsis thaliana) GI:2345150
calcium-binding EF hand family protein, similar to regulator of gene
silencing calmodulin-related protein GI:12963415 from (Nicotiana
tabacum); contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate
synthase 2 / MI-1-P synthase 2 / IPS 2, identical to SP|Q38862 Myoinositol-1-phosphate synthase isozyme 2 (EC 5.5.1.4) (MI-1-P synthase
2) (IPS 2) {Arabidopsis thaliana}
Touch-responsive protein. Encodes a calmodulin-like protein, with six
potential calcium binding domains. Calcium binding shown by Ca(2+)specific shift in electrophoretic mobility. Expression induced by touch
and darkness. Expression may also be developmentally controlled.
Express
calmodulin-like protein (MSS3), identical to calmodulin-like MSS3
from GI:9965747 (Arabidopsis thaliana)
IQ domain-containing protein / BAG domain-containing protein,
contains Pfam profiles PF00612: IQ calmodulin-binding motif,
PF02179: BAG (Apoptosis regulator Bcl-2 protein) domain
F-box family protein / tubby family protein, similar to
phosphodiesterase (GI:467578) (Mus musculus); similar to C-terminal
half of tubby protein (A mutation in the tub gene causes maturity-onset
obesity, insulin resistance, and sensory deficits) (GB:P505
Encodes a GPI-anchored arabinogalactan (AG) peptide with a short
'classical' backbone of 10 amino acids, seven of which are conserved
among the 4 other Arabidopsis AG peptides. These peptides may be
involved in cell signaling.
zinc finger (Ran-binding) family protein, contains Pfam domain,
PF00641: Zn-finger in Ran binding protein and others
broad-spectrum mildew resistance RPW8 family protein, contains Pfam
PF05659: Arabidopsis broad-spectrum mildew resistance protein RPW8
BAG domain-containing protein, low similarity to SP|Q99933 BAGfamily molecular chaperone regulator-1 {Homo sapiens}; contains Pfam
profile PF02179: BAG (Apoptosis regulator Bcl-2 protein) domain
C2 domain-containing protein, contains INTERPRO:IPR000008 C2
domain
protein kinase family protein, low similarity to GCN2 eIF2alpha kinase
(Mus musculus) GI:6066585; contains Pfam profiles PF03129:
At3g59520
At4g02980
At4g09150
At4g11260
At4g23100
At4g29340
At4g36010
At4g39520
At5g01990
At5g06750
At5g20010
At5g20020
At5g52820
At5g55560
At5g56600
At5g58590
Anticodon binding domain, PF00069: Protein kinase domain
rhomboid family protein, contains Pfam profile PF01694: Rhomboid
family
auxin binding protein involved in cell elongation and cell division
T-complex protein 11, contains Pfam PF05794: T-complex protein 11
Functions in plant disease resistance signaling, SCF(TIR1) mediated
degradation of Aux/IAA proteins.
glutamate-cysteine ligase / gamma-glutamylcysteine synthetase (GSH1),
identical to glutamate-cysteine ligase SP:P46309 from (Arabidopsis
thaliana); contains Pfam profile: PF04107 glutamate-cysteine ligase
family 2(GCS2). Two mRNA species are detected for
Profilin is a low-molecular weight, actin monomer-binding protein that
regulates the organization of actin cytoskeleton in eukaryotes, including
higher plants. PRF4 and PRF5 are late pollen-specific and are not
detectable in other cell types of the plant
pathogenesis-related thaumatin family protein, similar to receptor
serine/threonine kinase PR5K (Arabidopsis thaliana) GI:1235680;
contains Pfam profile PF00314: Thaumatin family
GTP-binding protein, putative, similar to SP|Q9Y295 Developmentally
regulated GTP-binding protein 1 (DRG 1) {Homo sapiens}; contains
Pfam profiles PF02824: TGS domain, PF01018: GTP1/OBG family
auxin efflux carrier family protein, contains auxin efflux carrier domain,
Pfam:PF03547
protein phosphatase 2C family protein / PP2C family protein, similar to
Ser/Thr protein phosphatase 2C (PP2C6) (GI:15020818) (Arabidopsis
thaliana); similar to protein phosphatase 2C (GI:3608412)
(Mesembryanthemum crystallinum); contains Pfam PF00481 : Pr
Ras-related GTP-binding nuclear protein (RAN-1), identical to GTPbinding nuclear protein RAN-1 SP:P41916 from (Arabidopsis thaliana)
Ras-related GTP-binding nuclear protein (RAN-2), identical to GTPbinding nuclear protein RAN-2 SP:P41917 from (Arabidopsis thaliana)
WD-40 repeat family protein / notchless protein, putative, similar to
notchless (Xenopus laevis) GI:3687833; contains Pfam PF00400: WD
domain, G-beta repeat (8 copies)
protein kinase family protein, contains protein kinase domain,
Pfam:PF00069
profilin (PRF3) mRNA, complete cds
Ran-binding protein 1, putative / RanBP1, putative, strong similarity to
Ran binding proteins from Arabidopsis thaliana atranbp1a (Arabidopsis
thaliana) GI:2058282, atranbp1b (Arabidopsis thaliana) GI:2058284;
contains Pfam profile PF00638: RanBP1 domain
P. Down-regulated signal transduction
AGI
Gene Product(TAIR Annotation)
Locus
At1g04520 33 kDa secretory protein-related, contains Pfam PF01657: Domain of
unknown function, duplicated in 33 KDa secretory proteins
At1g31420 leucine-rich repeat transmembrane protein kinase, putative, contains
At1g31970
At1g71840
At1g72950
At2g05920
At2g17500
At2g20610
At3g13710
At3g14067
At3g17510
At3g21220
At3g44300
At3g51920
At4g07410
At4g12730
At4g34980
At4g39800
At5g05380
At5g08620
Pfam profile: PF00069: Eukaryotic protein kinase domain
DEAD/DEAH box helicase, putative, similar to p68 RNA helicase
(Schizosaccharomyces pombe) GI:173419
transducin family protein / WD-40 repeat family protein, contains Pfam
profile:PF00560 Leucine Rich Repeat (4 copies); Pfam profile:PF00069
Eukaryotic protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
disease resistance protein (TIR-NBS class), putative, domain signature
TIR-NBS exists, suggestive of a disease resistance protein.
subtilase family protein, contains similarity to cucumisin-like serine
protease GI:3176874 from (Arabidopsis thaliana)
auxin efflux carrier family protein, contains auxin efflux carrier domain,
Pfam:PF03547
aminotransferase, putative, similar to nicotianamine aminotransferase
from Hordeum vulgare (GI:6498122, GI:6469087)'Confers auxin
overproduction. Mutants have an overproliferation of lateral roots.
prenylated rab acceptor (PRA1) family protein, weak similarity to
prenylated Rab acceptor (Mus musculus) GI:7716652; contains Pfam
profile PF03208: Prenylated rab acceptor (PRA1)
subtilase family protein, contains similarity to cucumisin-like serine
protease GI:3176874 from (Arabidopsis thaliana)
CBL-interacting protein kinase 1 (CIPK1), identical to CBL-interacting
protein kinase 1 (Arabidopsis thaliana) gi|11066952|gb|AAG28776;
contains Pfam profiles PF00069: Protein kinase domain and PF03822:
NAF domain; identical to cDNA CBL-interacting protei
mitogen-activated protein kinase kinase (MAPKK), putative (MKK5),
identical to GB:BAA28831 from (Arabidopsis thaliana); mitogenactivated protein kinase kinase (MAPKK) family, PMID:12119167
encodes a nitrilase (nitrile aminohydrolase, EC 3.5.5.1) which catalyzes
the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid
(IAA).Mutants have reduced sensitivity to IAN and are sensitive to IAA.
Other members of the NIT gene family a
CAM9 encodes a divergent member of calmodulin, which is an EF-hand
family of Ca2+-binding proteins. This gene is expressed in leaves,
flowers and siliques. The gene functionally complements yeast
calmodulin 1 (CAM1) but only when selected against the plasmid
transducin family protein / WD-40 repeat family protein, contains 7
WD-40 repeats (PF00400) (2 weak); similar to Vegetatible
incompatibility protein HET-E-1 (SP:Q00808) {Podospora anserina}
fasciclin-like arabinogalactan-protein (FLA2), identical to
gi_13377778_gb_AAK20858
subtilase family protein, similar to SBT1, a subtilase from tomato plants
GI:1771160 from (Lycopersicon esculentum)
Columbia myo-inositol-1-phosphate synthase mRNA, complete
prenylated rab acceptor (PRA1) family protein, weak similarity to
prenylated Rab acceptor 1 (PRA1) (Homo sapiens) GI:4877285;
contains Pfam profile PF03208: Prenylated rab acceptor (PRA1)
DEAD box RNA helicase (RH25), identical to RNA helicase
(Arabidopsis thaliana) GI:3776025; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal
domain
At5g13630 Encodes magnesium chelatase involved in plastid-to-nucleus signal
transduction.
At5g45430 protein kinase, putative, contains similarity to male germ cell-associated
kinase (Homo sapiens) gi|23268497|gb|AAN16405
At5g53450 protein kinase family protein, contains protein kinase domain,
Pfam:PF00069
At5g57020 myristoyl-CoA:protein N-myristoyltransferase 1 (NMT1), identical to
N-myristoyltransferase 1 (NMT1) (Arabidopsis thaliana) GI:7339834
At5g67360 subtilisin-like protease that has been located in stem and siliques but not
roots.