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Bioinformatics Group at UNB:
Strengths in Computer Science
Virendra C. Bhavsar
Faculty of Computer Science
University of New Brunswick
Fredericton, NB, E3B 5A3
Canada
OUTLINE
 Faculty of Computer Science at UNB
 Research Groups
 Faculty interested in Bioinformatics
 Interactions with the Faculty of
Science and others
 Conclusion
The Faculty of CS at UNB
 The first Faculty of CS in Canada
(established in 1990)
 Largest CS Undergraduate and
Postgraduate Program in Atlantic
Canada
 Diverse Group of Highly Interactive
Scientists
- interested in challenges and
opportunities presented by modern
biology
 Information Technology Center (ITC)
FCS: Research Groups
 Artificial Intelligence Group
 Human Computer Interaction Group
 Interactive Computing Group
 Parallel/Distributed Processing
Group
 Computational Geometry Group
 Automated Reasoning Group
 Bioinformatics Group
Interested CS Faculty
 Patricia Evans
- Bioinformatics/Computational
Biology
- Distributed Database searching
 Lev Goldfarb
- Inductive Learning: ETS
- Pattern Recognition
 Joseph Horton
- Computational Geometry
- Automated Reasoning
 Bruce Spencer
- Automated Reasoning
- LogicProgramming
 Alex Lopex-Ortiz
- Internet Computing
- Computational Geometry
 David Bremner
- Computational Geometry
 Bradley Nickerson
- Spatial Databases
- Knowledge-based Systems
- Director, ITC
Interested CS Faculty(cont.)
 Rodney Cooper
- Databases
- Data Mining
- Cryptography
 William Hyslop
- Databases
- Data Mining
 Ali Ghorbani
- Artificial Intelligence
- Parallel/Distributed Processing
 Claudia Iturriaga
- Computational Geometry
 Weichang Du
- Parallel/Distributed Processing
 Colin Ware
- Human Computer Interaction
- Visualization
 Virendra Bhavsar
- Parallel/Distributed Processing
- Pattern Recognition
- Intelligent Agents
Bioinfomatics
 Computational Gene Finding,
Protein Classification and Functional
Assignment
Genome data analyses
Patricia Evans, Lev Goldfarb, Alex LopezOrtiz, Ali Ghorbani, David Bremner,
Joseph Horton, Bruce Spencer, Claudia
Iturriaga, Virendra Bhavsar, Bradley
Nickerson
 Heterogeneous hardware/software
Intelligent mobile software agents
Lev Goldfarb, Alex Lopez-Ortiz, Ali
Ghorbani, Virendra Bhavsar, Rod Cooper,
William Hyslop, Weichang Du
 Data Management/Data Mining/Data
Warehousing
Lev Goldfarb, Rod Cooper, William Hyslop,
Weichang Du
Bioinformatics (cont.)
 Very high speed bioinformatic
searches and analyses
- High Performance Computing
Patricia Evans, Alex Lopez-Ortiz,
Virendra Bhavsar, Weichang Du
 Visualization
Colin Ware
Collaborations/Interactions
 Patricia Evans
- Denise Clark (Biology)
- Mariana Kant (U de Moncton)
- Alex Lopex-Ortiz
 Lev Goldfarb
- Saba Mattar (Chemistry)
- Ghislain Deslongchamps
- Virendra Bhavsar
- William Hyslop
 Rod Cooper
- Ghislain Deslongchamps
 Virendra Bhavsar
- C3.ca and HPCnet
- Memorial University of NF
- NRC, Ottawa
- Benerjee (Statistics)
- Saba Mattar
 Advanced Computational Research
Laboratory
- CFI proposal (CS, Sci. and Eng.)
Conclusion
 Information Technology Center
- Internet Computing Laboratory (CFI)
- Advanced Computational Research
Laboratory (CFI proposal)
 Young and Dynamic Faculty in CS
 Diverse Group of Highly Interactive
Scientists
- enthusiastic about the challenges
and opportunities presented by
modern biology
 Strong interactions with the Faculty of
Science and others