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Examples in Context - Biology Unit 1 Biodiversity Technology as a tool to measure, analyse and monitor biodiversity Developments in software, computing and supercomputing have been important in ecological classification as they have enabled scientists to classify regions according to large sets of biotic and abiotic data and to compare data over time (ACSBL010). Supercomputers have also enabled the development of large, complex models to analyse species data collected from multiple individuals in a range of locations, and to infer relationships between species, including their shared evolutionary past (ACSBL009). Advances in remote sensing radar imagery and satellite tracking in real time have enabled scientists to measure and monitor populations and play a significant role in surveying and monitoring large or inaccessible ecosystems. Science as a Human Endeavour links • • Development of complex models and/or theories often requires a wide range of evidence from multiple individuals and across disciplines (ACSBL009) Advances in science understanding in one field can influence other areas of science, technology and engineering (ACSBL010) International biodiversity protection International agreements about biodiversity protection, such as the World Heritage Convention, are based on the premise that local, regional and international biodiversity represent a global resource, vital for human survival, that should be maintained for future generations (ACSBL008). The World Heritage Convention is designed to ensure the protection of natural and cultural heritage and encourage international cooperation in the conservation of biodiversity. Sites are selected as natural World Heritage based on a range of criteria, including, but not limited to, conservation of biodiversity (ACSBL011). Selected sites are monitored to ensure continued integrity, protection and management, including evaluation of projected economic, social and environmental impacts on the site (ACSBL014). Within the international scientific community, methods and findings related to biodiversity monitoring and analysis are shared through peer reviewed articles in international journals (ACSBL014). Science as a Human Endeavour links • Science is a global enterprise that relies on clear communication, international conventions, peer review and reproducibility (ACSBL008) • The use of scientific knowledge is influenced by social, economic, cultural and ethical considerations (ACSBL011) • Scientific knowledge can be used to develop and evaluate projected economic, social and environmental impacts and to design action for sustainability (ACSBL014) ACARA Biology Examples in Context February 2013 1 Biodiversity targets Setting agreed biodiversity targets has been proposed as one way to achieve positive international action towards biodiversity conservation and encourage accountability (ACSBL008). Setting such targets requires a broad range of scientific knowledge in gathering data, identifying indicators and ensuring that measurement is valid and reliable and will inform improved ecosystem management (ACSBL009). The 2010 Biodiversity Target was endorsed by the World Summit on Sustainable Development and aimed to achieve a significant reduction in the rate of biodiversity loss at global, regional and national levels. Measurement of attainment of this target required international agreement regarding baseline data, acceptable timescales, acceptable rates and appropriate measures for monitoring and evaluating the rate of biodiversity loss (ACSBL008). Science as a Human Endeavour links • • Science is a global enterprise that relies on clear communication, international conventions, peer review and reproducibility (ACSBL008) Development of complex models and/or theories often requires a wide range of evidence from multiple individuals and across disciplines (ACSBL009) Ecosystem dynamics Indigenous knowledge of ecosystem interactions and change Indigenous knowledge of environmental change and interactions between abiotic and biotic elements of ecosystems in local contexts has developed over thousands of years and provides valuable data for understanding ecosystem dynamics (ACSBL009). Some Indigenous knowledge is represented in Indigenous art and can include evidence of past biodiversity and climate change that supports data from the fossil record. Indigenous knowledge also includes land management practices that can maintain ecosystems at specific successional points. These practices are often used to complement practices in conservation areas, where land management decisions reflect scientific, social, cultural and ethical considerations (ACSBL011). Science as a Human Endeavour links • • Development of complex models and/or theories often requires a wide range of evidence from multiple individuals and across disciplines (ACSBL009) The use of scientific knowledge is influenced by social, economic, cultural and ethical considerations (ACSBL011) Marine reserves Southeast Asia is a global epicentre for marine diversity; the establishment of marine reserves aims to contribute to the long-term conservation of marine ecosystems and protect marine biodiversity. Identification and classification of marine reserve areas requires consideration of enforcement logistics, the multiple uses of the area (for example, fishing, recreation, tourism), indigenous ACARA Biology Examples in Context February 2013 2 peoples’ usage rights, and the extent of the area required to contribute to local and global biodiversity conservation (ACSBL011). Scientific knowledge based on local data collection and analysis, computer simulation of future scenarios and analysis of analogous scenarios is required to analyse these factors, classify areas and predict the likelihood that the reserve will successfully protect marine biodiversity (ACSBL013). Science as a Human Endeavour links • • The use of scientific knowledge is influenced by social, economic, cultural and ethical considerations (ACSBL011) Scientific knowledge can enable scientists to offer valid explanations and make reliable predictions (ACSBL013) Keystone species and conservation The concept of a keystone species, a species that is particularly important in maintaining the structure of an ecological community, was first introduced by Robert T Paine in the late 1960s. Data supporting the theory has been collected by a large number of scientists from across a wide range of ecosystems and for a wide range of species (ACSBL009). Some biologists have advocated for keystone species to be special targets for conservation efforts and keystone species theory has informed many conservation strategies. However there are differing views about the effectiveness of single-species conservation (such as keystone species, flagship species or umbrella species) in maintaining complex ecosystem dynamics (ACSBL012). Science as a Human Endeavour links • • The use of scientific knowledge may have beneficial and/or harmful and/or unintended consequences (ACSBL012) Development of complex models and/or theories often requires a wide range of evidence from multiple individuals and across disciplines (ACSBL009) ACARA Biology Examples in Context February 2013 3 Unit 2 Cells as the basis of life Stem cell research Embryonic stem cells have the potential to be grown into specialised cells and could enable the repair or replacement of ailing organs and tissues. In the late 1990s, stem cells were successfully removed from available embryos at fertility clinics and the world’s first embryonic stem cell line was established (ACSBL037), prompting excitement in the international scientific community and concern in religious and political circles. Concerns about the potential for unethical human experimentation has prompted some governments to prohibit some types of stem cell research, or to limit government funding for it (ACSBL040). International groups such as the International Society for Stem Cell Research have convened experts in science, ethics and law to develop guidelines for human embryonic stem cell research, with the aim of promoting transparent and uniform practice worldwide (ACSBL037). Science as a Human Endeavour links • • Science is a global enterprise that relies on clear communication, international conventions, peer review and reproducibility (ACSBL037) The use of scientific knowledge is influenced by social, economic, cultural and ethical considerations (ACSBL040) Photosynthesis and productivity Photosynthesis is one of the most important biological processes on Earth but it is quite inefficient; researchers report that natural trade-offs result in very low efficiency in many important food crops. Research is currently underway to engineer or enhance photosynthesis to improve food and fuel production. This includes the development of artificial leaves that convert solar energy to a liquid fuel via a process similar to photosynthesis, and investigation of combining more efficient algal photosynthesis with plant photosynthesis to improve crop productivity (ACSBL041). These advances have the potential to decrease reliance of fossil fuels and improve agricultural sustainability (ACSBL043). Science as a Human Endeavour links • • The use of scientific knowledge may have beneficial and/or harmful and/or unintended consequences (ACSBL041) Scientific knowledge can be used to develop and evaluate projected economic, social and environmental impacts and to design action for sustainability (ACSBL043) Cell membrane model development From the nineteenth century it was accepted that some form of semi-permeable barrier must exist around a cell, although there was no evidence to indicate its structure. Various scientists, including Traube, Quincke, Fricke and Gorter and Grendel, contributed to the theory that the cell membrane was composed of a lipid bilayer, and in the 1950s the use of electron microscopy confirmed these results through direct investigation of the membrane (ACSBL039). The first model of the membrane to incorporate the notion of fluidity was proposed by Mueller and Rudin in the 1960s, and it was ACARA Biology Examples in Context February 2013 4 demonstrated conclusively by Frye and Edidin in 1970. The results of this experiment were used by Singer and Nicolson as evidence for their 1972 proposal of the fluid mosaic model of the cell membrane (ACSBL038). Ongoing research continues to refine this model, such as research into the structure of channel proteins in the membrane (ACSBL038). Science as a Human Endeavour links • • Development of complex models and/or theories often requires a wide range of evidence from multiple individuals and across disciplines (ACSBL038) Advances in science understanding in one field can influence other areas of science, technology and engineering (ACSBL039) Multicellular organisms Animal ethics The use of animals in research has played an important role in furthering scientific understanding of the structure and function of multicellular organisms and the mechanisms of medical interventions. Ethical treatment of animals as sentient, feeling beings has been accepted as a global principle in research and the three strategies of replacement, reduction and refinement form the basis of many international guidelines (ACSBL037). Replacement is defined as the substitution for conscious living higher animals of insentient material, such as through use of tissue culture techniques; reduction involves using only the minimum number of animals needed to meet statistical requirements; and refinement involves decreasing the severity of the impact of the procedure on any animals that have to be used. These strategies are based on scientific research and have been devised to inform sustainable ethical use of animals in research (ACSBL043). Science as a Human Endeavour links • • Science is a global enterprise that relies on clear communication, international conventions, peer review and reproducibility (ACSBL037) Scientific knowledge can be used to develop and evaluate projected economic, social and environmental impacts and to design action for sustainability (ACSBL043) Organ and tissue transplantation Modern surgical techniques have made it possible for diseased or damaged organs to be replaced by healthy ones from a living or dead donor. Improvements in technologies to store and transport living tissue and the development of immunosuppressive drugs to decrease rejection by transplant recipients have led to increasing numbers of people benefiting from organ and tissue transplants (ACSBL039). However the increased demand for transplantation has also led to illegal organ and tissue trafficking, forced donation and ‘transplantation tourism’, where individuals travel to other countries where it is easier or cheaper to obtain a transplant. These situations may involve violation of human rights and exploitation of the poor, and pose many ethical concerns (ACSBL041). Science as a Human Endeavour links • The use of scientific knowledge may have beneficial and/or harmful and/or unintended consequences (ACSBL041) ACARA Biology Examples in Context February 2013 5 • Advances in science understanding in one field can influence other areas of science, technology and engineering (ACSBL039) Bioartificial organs There is a demand for bioartificial tissues and organs as an alternative to donor organs or tissues, which are in short supply and may be rejected by the recipient’s body (ACSBL040). To design bioartificial organs, scientists use knowledge of the structure and function of organs to design a scaffold and populate it with functional tissue. Healthy cells from the patient’s diseased organ are extracted and grown on the scaffold, with cells applied in layers to encourage them to form tissues. If the patient’s own cells are too badly damaged, organs could be grown using cells from a stem cell bank. Developments in this area could lead to a future in which surgeons would order organs to be grown as needed, removing the need to wait for donors whose organs and tissues might not be a perfect match to the recipient (ACSBL042). Science as a Human Endeavour links • • The use of scientific knowledge is influenced by social, economic, cultural and ethical considerations (ACSBL040) Scientific knowledge can enable scientists to offer valid explanations and make reliable predictions (ACSBL042) ACARA Biology Examples in Context February 2013 6 Unit 3 DNA, genes and the continuity of life Bioinformatics Bioinformatics involves the construction, maintenance and use of databases to analyse the relationships in biological data, such as amino acid sequences or nucleotide sequences (ACSBL068). DNA and protein sequences can be mapped and analysed to compare genes within a species or between different species. One example of a bioinformatics project is the Human Genome Project, an international, collaborative research project which resulted in the publication of the full sequence of the human genome in 2003 (ACSBL073). The project was completed ahead of schedule, largely as a result of widespread international cooperation and advances in genomics and computing. The databases associated with the project are freely available via the internet, and this data is used extensively by the international scientific community. Science as a Human Endeavour links • • ICT and other technologies have dramatically increased the size, accuracy and geographic and temporal scope of data sets with which scientists work (ACSBL068) International collaboration is often required when investing in large-scale science projects or addressing issues for the Asia-Pacific region (ACSBL073) A $1000 genome A number of companies have announced that individuals will soon be able to access full genome sequencing for roughly $1000, enabling many more people to identify whether they have gene variants associated with genetic disease (ACSBL071). One potential application of this technology is the sequencing of all babies at birth, in order to enable doctors to identify genetic conditions and structure individualised healthcare, dietary and exercise regimes that will lead to better health. However there is significant concern about the risks in making this data so readily available, and the privacy issues regarding ownership and availability of sequences. Many groups are calling for safeguards to be implemented before whole genome sequencing becomes widespread, including legislation to protect personal privacy, regardless of how the sample was obtained (ACSBL070). Science as a Human Endeavour links • • People can use scientific knowledge to inform the monitoring, assessment and evaluation of risk (ACSBL071) The acceptance of scientific knowledge can be influenced by the social, economic, and cultural context in which it is considered (ACSBL070) Genetically modified organisms ACARA Biology Examples in Context February 2013 7 Genetic engineering to insert genes responsible for specific traits into plant and animal DNA is seen by some scientists as the next wave of advancement in agriculture, with the potential to increase crop yields and provide ways to grow crops on degraded lands (ACSBL074). A wide range of transgenic crops is currently on the market, some having been engineered to resist pesticides, insects and disease. Work is also underway on transgenic animals with engineered traits such as faster growth and the ability to produce pharmaceuticals. Critics fear that genetically engineered products are being rushed to market before their effects are fully understood. Concerns include possible health risks to consumers and the long term ecological impact of releasing engineered organisms into the environment, including the effects on non-target organisms, a speeding of the evolution of pesticide-resistant pest species, and the possibility of gene flow from crop species to weed species resulting in the emergence of ‘super weeds’ (ACSBL072). Science as a Human Endeavour links • • Scientific knowledge can be used to develop and evaluate projected economic, social and environmental impacts and to design action for sustainability (ACSBL074) Science can be limited in its ability to provide definitive answers to public debate; there may be insufficient reliable data available, or interpretation of the data may be open to question (ACSBL072) Continuity of life on Earth Evidence for evolution Darwin proposed the theory of evolution by natural selection to refute Lamarck’s theory. He provided evidence for descent with modification (branching evolution) based on patterns in variation of domesticated and wild species, and patterns of species distributions in time and space (ACSBL069). Contemporary evidence for evolution comes from five main lines of evidence: paleontology, biogeography, developmental biology, morphology and genetics. Technological developments in the fields of comparative genomics, comparative biochemistry and bioinformatics have enabled identification of further evidence for evolutionary relationships (ACSBL068). Science as a Human Endeavour links • • ICT and other technologies have dramatically increased the size, accuracy and geographic and temporal scope of data sets with which scientists work (ACSBL068) Models and theories are contested and refined or replaced when new evidence challenges them, or when a new model or theory has greater explanatory power (ACSBL069) Human evolution – are we still evolving? Theoretical models of natural selection do not account for culture and technology, which can alter selection pressures so that it is not necessarily the ‘fittest’ that survive to reproduce. This has caused some to ask whether human evolution is still occurring, particularly in Western societies post the significant cultural events of agriculture, the Industrial Revolution, modern medicine and ACARA Biology Examples in Context February 2013 8 mass transportation. However, new results from projects such as the 1000 Genomes Project indicate that the rapid increase in the human population (from roughly five million at the end of the last Ice Age to more than seven billion today) has generated an enormous amount of variation in the species (ACSBL068). Other localised studies point to fertility-related natural selection (ACSBL069). Science as a Human Endeavour links • • Models and theories are contested and refined or replaced when new evidence challenges them, or when a new model or theory has greater explanatory power (ACSBL069) ICT and other technologies have dramatically increased the size, accuracy and geographic and temporal scope of data sets with which scientists work (ACSBL068) Sustainable population size and reserve area The notion of minimum reserve size to maintain ecological processes is an important focus of conservation planning, and includes consideration of biogeography and population dynamics. Estimating minimum reserve size for a target conservation species can involve the calculation of minimum viable population and consideration of the area required for each individual in that population, given species preferences for particular habitat and social dynamics within the population (ACSBL074). However, determination of reserve size must also consider the needs and attitudes of other stakeholders, including cultural and economic values of indigenous peoples, recreational and aesthetic values of the public, the capacity to protect, monitor and manage the reserve, and other factors (ACSBL070). An alternative to single large reserves may be a number of smaller reserves that are connected by ‘green corridors’ that enable fauna to migrate. Science as a Human Endeavour links • • The acceptance of scientific knowledge can be influenced by the social, economic, and cultural context in which it is considered (ACSBL070) Scientific knowledge can be used to develop and evaluate projected economic, social and environmental impacts and to design action for sustainability (ACSBL074) ACARA Biology Examples in Context February 2013 9 Unit 4 Homeostasis Modeling human thermoregulation Computer models of human thermoregulation responses, including heat transfer, perspiration, respiration and blood flows, have been developed for use in the design of clothing and environments that aim to protect humans from hyper- and hypothermia (ACSBL103). Models of human thermoregulation can aid in the design of military chemical suits, industrial protective clothing, space suits, and environments such as space stations, aircraft, vehicles and buildings. Simulating and modeling the human thermoregulatory system also enable scientists to study and predict the effects of extreme environments on the human body, and to design safety regulations for people working in these environments, such as firefighters, pilots, foundry workers and soldiers (ACSBL106). Science as a Human Endeavour links • • ICT and other technologies have dramatically increased the size, accuracy and geographic and temporal scope of data sets with which scientists work (ACSBL103) People can use scientific knowledge to inform the monitoring, assessment and evaluation of risk (ACSBL106) Use of hormones in the dairy industry Use of growth hormones and other hormones is controversial in the livestock industry, with proponents arguing that they increase productivity, reduce the cost of production and improve food affordability. Recombinant bovine somatotropin (rBST) is a synthetically produced hormone that has been shown to increase milk yield. While proponents of rBST point to studies that show that milk products produced using rBST cannot be distinguished from other milk products, the Codex Alimentarius Commission, a United Nations body that sets international food standards, has to date refused to approve rBST as safe (ACSBL107). While the United States and other countries currently allow the use of rBST, countries such as Australia and New Zealand have banned it based on evidence that it increases the risk of health issues in cows and because of concerns regarding milk contamination (ACSBL106). This issue is significant in international trade of dairy products, prompting debate about appropriate labeling of milk products, international standards and reasonable import bans. Science as a Human Endeavour links • • Science can be limited in its ability to provide definitive answers to public debate; there may be insufficient reliable data available, or interpretation of the data may be open to question (ACSBL107) People can use scientific knowledge to inform the monitoring, assessment and evaluation of risk (ACSBL106) Snake antivenom production Globally, hundreds of thousands of people die of snake bite each year, most of them in developing countries. The venom of many species of snake contains neurotoxins that cause paralysis. ACARA Biology Examples in Context February 2013 10 Antivenom is conventionally manufactured by ‘milking’ venomous animals, immunising large animals with small quantities of the collected venom and then extracting the antibodies produced in the animals’ blood. The process is risky and labour-intensive and the products are highly expensive, often provoke allergic reactions, and are difficult to transport and store, making availability of antivenoms a significant challenge in developing countries. Some organisations have called for global cooperation and investment by science, business and government bodies to increase the availability of antivenoms in the developing world (ACSBL108). Part of this challenge may be met by new research that has demonstrated it is possible to generate an antibody response using synthetic DNA which is injected into cells to produce a protein that closely resembles the most toxic parts of the actual venom (ACSBL109). Science as a Human Endeavour links • • Scientific knowledge can be used to develop and evaluate projected economic, social and environmental impacts and to design action for sustainability (ACSBL109) International collaboration is often required when investing in large-scale science projects or addressing issues for the Asia-Pacific region (ACSBL108) Infectious disease Modeling disease outbreak and spread The first mathematical models of the spread of disease were developed in the eighteenth century by Daniel Bernoulli, who created a model to predict increased life expectancy if populations were inoculated against smallpox. As these models preceded an understanding of germ theory, it was not until the early twentieth century that more reliable models were developed (ACSBL104). Contemporary models project how the disease will progress and simulate the effects of possible interventions. Such models are used to inform public health interventions such as mass vaccination programs. Supercomputing increased processing capacity and data storage has enabled models to increase in their complexity, with new variables examined and new relationships found, such as the relationships between epidemic frequency and location and factors such as population size, environmental change and antibiotic resistance (ACSBL103). Science as a Human Endeavour links • • ICT and other technologies have dramatically increased the size, accuracy and geographic and temporal scope of data sets with which scientists work (ACSBL103) Models and theories are contested and refined or replaced when new evidence challenges them, or when a new model or theory has greater explanatory power (ACSBL104) Managing pandemics in the Asia region Epidemics and pandemics that are global or regional are becoming more prevalent, with outbreaks of diseases such as HIV/AIDS, diphtheria, malaria, measles and swine flu at a global level, and Severe Acute Respiratory Syndrome (SARS) and avian flu at regional levels. Asia has been described as particularly susceptible to epidemics and pandemics of infectious disease due to increasing migration and global travel, high population density in urban areas and underdeveloped healthcare systems in some countries. The high cost of drugs and vaccines presents a particular challenge for developing countries in Asia, as does community mistrust of vaccination (ACSBL105). International ACARA Biology Examples in Context February 2013 11 business has recognised the costs associated with global and regional epidemics and has advised that businesses, governments and international organisations should collaborate to help prevent infectious diseases among poor populations by strengthening regional and national pandemic preparedness planning and expanding public-private partnerships to increase drug and vaccine availability (ACSBL108). Science as a Human Endeavour links • • The acceptance of scientific knowledge can be influenced by the social, economic, and cultural context in which it is considered (ACSBL105) International collaboration is often required when investing in large-scale science projects or addressing issues for the Asia-Pacific region (ACSBL108) Quarantine and biosecurity As an island nation, Australia has had an advantage over many other countries because its borders are easier to protect against the influx of disease-carrying materials and organisms. However, as global trade and air travel become more prevalent, it is increasingly important for Australia to protect its agriculture industry and environment through quarantine measures. These include surveillance, monitoring, examination and clearance activities and conform to policies and protocols that are based on scientific data and risk analysis (ACSBL109). Quarantine policy is determined through bilateral and multinational negotiations and involves consideration of protection of Australia’s animal and plant health status, Australia’s international obligations, the trade impact of quarantine policies, and environmental protection (ACSBL108). Science as a Human Endeavour links • • Scientific knowledge can be used to develop and evaluate projected economic, social and environmental impacts and to design action for sustainability (ACSBL109) International collaboration is often required when investing in large-scale science projects or addressing issues for the Asia-Pacific region (ACSBL108) ACARA Biology Examples in Context February 2013 12