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Page | 66 Cell Unit (see guidelines on page 27) Page | 67 Cell Unit Page At the end of this unit, I will: Demonstrate basic microscopy skills. Compare and contrast various types of cells. Be able to identify all organelles within cells and describe their function. Explain the difference between quantitative and qualitative data. Roots, Prefixes and Suffixes I will understand are: Prefixes: Lyso-, chloro-, mito-, nucleo -, micro-, Suffixes: -port, -some, -plast, -scope, -ose The terms I can clearly define are: Basic Cell Structures: Cytoplasm, ribosome, plasma membrane, nucleolus, ribosome, rough endoplasmic reticulum, Golgi apparatus, Vesicle, mitochondria, chloroplast, cytoskeleton, centrioles, centrosome, cell wall, cilium, flagellum, vacuole, lysosome Data: Quantitative data, qualitative data Basic Cell Terms: Cell, organelle, prokaryotic cell, eukaryotic cell, plant cell, animal cell, bacteria The assignments I will have completed by the end of this unit are: Page | 68 Cell Structure and Function Notes Labeling of Prokaryotic, Eukaryotic Plant and Eukaryotic Animal Cells Prokaryotic Bacteria Lab Eukaryotic Comparison Lab Plant Cell: Marking of the Text and Coloring Animal Cell: Marking of the Text and Coloring Biochemistry in Perspective: Marking of the Text Organelle of the Year Cover When Good Organelles Go Bad Article Cell City Analogy Extra Credit: Cell City Analogy, Diagram, and 3-D Model Cell Unit Study Guide Cell Unit Concept Map Cell Unit Parent Page Cell Structure and Function Take notes during class, and then use your textbook to draw the individual organelles. Use color and be neat. What is a cell? What are organelles? Cell Organelle Drawing of Organelle Function/Information Present in Plant? Animal? Prokaryotic Cells? Plasma Membrane Microvilli Cell Wall Cytoplasm Cilia Flagella Page | 69 Prokaryotic Cell: Eukaryotic Cells: Label and color the following image: Type of Cell: _______________________________ 1 10 2 23 (threadlike) 3 11 4 5 6 12 7 13 5 8 9 14 15 Page | 70 Cell Structure and Function Cell Organelle Drawing of Organelle Function/Information Present in Plant? Animal? Prokaryotic Cells? Nucleolus Nucleus Function: Free Ribosomes: Ribosomes Attached Ribosomes: Rough Endoplasmic Reticulum (RER) Smooth Endoplasmic Reticulum (SER) Vesicle Page | 71 Eukaryotic Cells: Type of Cell: _____________________________________ 16 (opening) 2 17 13 21 5 20 22 Page | 72 Cell Structure and Function Cell Organelle Drawing of Organelle Function/Information Present in Plant? Animal? Prokaryotic Cells? Golgi Apparatus Mitochondria Chloroplast Vacuole Cytoskeleton Centrosome and Centriole Lysosome Page | 73 Prokaryotic (Bacteria) Lab – Computer Images Name of Slide: Magnification: Name of Slide: Magnification: Page | 74 Comparing Eukaryotic (Plant and Animal) Cells Lab Data Name of Slide: Magnification: Name of Slide: Magnification: Page | 75 Comparing Eukaryotic (Plant and Animal) Cells Lab Flowchart Page | 76 Comparing Eukaryotic (Plant and Animal) Cells Lab Procedure Objectives: In this lab you will observe cell structures, compare and contrast animal and plant cells and relate the structure of a cell to its function. Data: There are two types of data that can be gathered during a lab. Some data is objective, measurable, and can be expressed in terms of numbers. This is defined as quantitative data. However, some data is gathered by means of observation and uses language to describe what is determined by your senses. This is called qualitative data. Qualitative data is more subjective in nature, and the results can be interpreted differently, depending on the perspective of the observer. You will be gathering qualitative data during this lab. Materials: glass slides, coverslips, pipette, water, microscope, toothpick, Elodea plant in water, methylene blue, paper towel Procedure: Part 1: Plant Cells Elodea is a leafy flowering plant commonly found in aquariums. Its leaves are thin and transparent; most of them are only 2 cell layers thick. New leaves are produced at the tip of the plant. You will create a wet-mount slide of an elodea leaf. A. Cut one leaf from an elodea stem. B. Follow the directions for creating a “wet mount” slide on the previous page. (Steps 1-3) C. Locate your sample on low power, then center and focus. Find it on medium and then on high power. D. Draw (in color) and name your sample on the following pages. E. Label the following structures: cell wall, cytoplasm, and chloroplasts. Part 2: Animal Cells Inside the mouth, epithelial cells are joined together in a sheet. You will prepare a slide with cells from your oral cavity, by the following procedure. Don't worry; these cells are constantly being shed from your mouth so they will not be missed! A. Take a flat toothpick (a NEW one) and using the large end gently scrape the inside of your cheek 3 or 4 times. B. Smear the cells on the toothpick onto a clean slide. C. Follow the directions for staining your microscope slide on the previous page. D. Locate your sample on low power, then center and focus. Find it on medium and then on high power. E. Draw (in color) and name your sample on the following pages. F. Label the following structures: cell membrane, cytoplasm, and nucleus (maybe nucleolus). Page | 77 Cell Comparison Lab Conclusion Questions 1. What observable characteristics can be used as evidence for classifying a specimen as a plant? In other words, what structures or features do you see that tell you the specimen you observed (elodea) was a plant? 2. Are the chloroplasts you observed moving or stationary? 3. Inside the mouth, cheek cells are joined together in a sheet. Why are they scattered here? 4. How are the animal cells different from the plant cells you observed (list at least three differences)? 5. What is the relationship between plant cell structure and the ability of plants to stand upright? 6. Cheek cells do not move on their own, so you will not find two organelles that function for cell movement. Name these organelles. 7. Were the animal and plant cells you observed eukaryotic or prokaryotic? How do you know? 8. Is the nucleus always found in the center of the cell? 9. Why are stains such as methylene blue used when observing certain cells under the microscope? Page | 78 10. The light microscope used in this lab is not powerful enough to view other organelles in the cheek cells and elodea leaf cells. What parts of the cell were visible? What parts of the cell were not? Fill in the table below. Visible Not visible Elodea Leaf Cheek Cell 11. How are these plant and animal cells different from the prokaryotic cells that you drew? Consider all visible and non-visible structures from the lab. 12. What structures do plant cells and prokaryotic cells share that you directly observed? 13. What structures do all cells share, despite their diversity? Consider all visible and nonvisible structures. 14. Is the data that you gathered in this lab quantitative or qualitative? Why? 15. Suggest one way that you can study cells in a quantitative way. Explain how your suggestion would be considered quantitative. Page | 79 Page | 80 Instructions: First number your paragraphs. Then, as you read, circle organelles and underline or highlight their functions. Page | 81 Page | 82 Instructions: First number your paragraphs. Then, as you read, circle organelles and underline or highlight their functions. Page | 83 BIOCHEMISTRY IN PERSPECTIVE Organelles and Human Disease Directions: Read the article below. First, number the paragraphs. Then circle organelles, circle names of diseases associated with organelles, and underline disease symptoms or complications that are caused by the organelle’s dysfunction. What is the role of biochemistry in modern medicine? The scientific investigation of human disease is only two hundred years old. During Europe’s Age of Enlightenment (seventeenth and eighteenth centuries), as a result of various political and social factors combined with the discoveries of Galileo, Isaac Newton, Francis Bacon, René Descartes, and other scientists, belief systems began to change. Health concepts originating with Hippocrates (fifth century BCE) and Galen (second century CE) had been unchallenged for over a thousand years. Humoral medicine, in which health was understood in terms of a balance of the “humors” of blood, phlegm, yellow bile, and black bile, was universally accepted, and later supplemented by medieval superstition (sickness caused by divine intervention). Gradually, however, the capacity of human reason to understand the human body gained acceptance. By the end of the nineteenth century, previously unimaginable progress toward disease diagnosis and treatment had been made because of discoveries in fields ranging from anatomy, cellular pathology, and bacteriology to statistics. Today, human disease is investigated at the cellular and molecular levels because of breakthrough work performed in the 1940s and 1950s. Among the most important was the discovery of DNA as the genetic material and its subsequent structure determination. The adaptation of the electron microscope by Keith Porter for use with biological specimens, and the centrifugation techniques developed by George Palade, Albert Claude, and Christian DeDuve made the identification of distinct organelles possible. More recent work utilizing DNA technology has profoundly increased our understanding of the molecular basis of disease and vastly improved diagnostic and treatment options. Organelles can contribute to a disease state in several ways. First, the organelle itself may be dysfunctional either because it contains one or more defective biomolecules that impair function, or because it has been damaged by exposure to harmful substances such as chemicals, heavy metals, or oxygen radicals. Second, an organelle can, through its normal function, exacerbate damage occurring elsewhere in the cell. For example, as we have seen, misfolded proteins in the ER can trigger apoptosis, even in circumstances in which it is counterproductive. The subsections that follow describe diseases associated with the endomembrane system: the ER, Golgi apparatus, vesicular organelles, the nuclear envelope, and the plasma membrane. THE ENDOPLASMIC RETICULUM. The ER plays such a central role in the synthesis of proteins and lipids that any disturbance in its function can have serious consequences. Misfolded proteins coded for by mutated genes and ER stress cause a vast number of diseases. Cystic fibrosis (CF) is a prominent example of a disease caused by misfolded proteins. CF is an ultimately fatal inherited disorder in which the lack of a specific type of plasma membrane chloride channel, the cystic fibrosis transmembrane regulator (CFTR), causes the accumulation of a thick mucus that compromises several organs, most notably the lungs and pancreas. The misfolded CFTR protein becomes trapped within the ER and is subsequently degraded. The structural and functional properties of CFTR are described in Chapter 11. ER stress, induced by a variety of conditions such Page | 84 as protein aggregation, Ca2+ depletion, glucose deprivation, or fatty acid overload, can result in severe cell dysfunction or death. It is an important feature of such neurodegenerative conditions as Alzheimer’s, Huntington’s, and Parkinson’s diseases, as well as heart disease and diabetes. GOLGI APPARATUS. The most commonly recognized Golgi-linked diseases are a group of 15 congenital disorders of glycosylation (CDG). (The term glycosylation is used to describe the covalent linkage of carbohydrate groups to polypeptide or lipid molecules.) Caused by mutations in genes that encode glycosylation enzymes or glycosylation-linked transport proteins, a CDG is usually lethal by the age of 2. Symptoms include mental retardation, seizures, and liver disease. NUCLEAR ENVELOPE. Many of the diseases attributed to defects in the nuclear envelope occur in the genes that code for lamin, a cytoskeletal component of the nuclear lamina, and emerin, an inner membrane protein. Examples include a variety of diseases of skeletal and cardiac muscle, neurons, and tendons. Progeria, a fatal childhood disease characterized by premature aging of the musculoskeletal and cardiovascular systems, has been linked to a specific mutation in the lamin A gene. One form of a rare hereditary muscular disease called Emery-Dreifuss muscular dystrophy is caused by the absence or mutation of the gene that codes for emerin. The cellular consequences of nuclear envelope deficits include a fragile nuclear membrane, altered regulation of DNA replication and transcription, and low tolerance to mechanical stress. VESICULAR ORGANELLES. Diseases associated with vesicular organelles have been linked to lysosomes and peroxisomes. The lysosomal storage diseases (LSD) are a group of disorders caused by the absence of one or more lysosomal enzymes. The resulting accumulation of undigested molecules causes irreversible cell damage. The lipid storage diseases Tay-Sachs and Gaucher’s, as well as Pompe’s disease (glycogen storage disease type II), are caused by the absence of a single enzyme. Death occurs in early childhood. In I-cell disease, the import of all lysosomal enzymes into lysosomes in certain organs is defective. In affected cells, the enzymes are instead secreted into the extracellular matrix. Symptoms include mental deterioration, heart disease, and respiratory failure. PLASMA MEMBRANE. The plasma membrane occupies a pivotal position in the endomembrane system, as it is both the end point of the secretory pathway and the beginning of the endocytic pathway. Consequently, the PM plays important roles in a wide diversity of diseases. Diseases such as CF, diabetes, and familial hypercholesterolemia (inherited high blood cholesterol levels) are directly caused by defective or missing membrane proteins. In a large number of infectious diseases, microorganisms invade body cells in endocytic processes initiated by binding to certain plasma membrane receptors. Examples of such organisms include bacteria such as Listeria monocytogenes, Salmonella , and Shigella , and some viruses (e.g., HIV). For viruses like HIV, which are covered in an “envelope” derived from host cell membrane, entry is gained when the virus binds to one or more PM receptors. Following fusion of the host cell membrane, and the viral envelope, the viral genome enters the host cell. Other diseases are caused when certain bacteria release toxins that injure cells. Once the toxin has become bound to a specific PM receptor on a target cell, either a pore is formed through which the toxic protein is transferred or endocytosis is triggered. Examples include cholera, pertussis (whooping cough), and diphtheria toxins. SUMMARY: Biochemical analysis of organelles has resulted in significant progress in our understanding of the causes of many human diseases. Page | 85 Organelle of the Year Use the following diagram to design an “Organelle of the Year” magazine cover modeled after TIME magazine’s “Person of the Year” edition. BE CREATIVE! Your magazine cover should have a picture of an animal cell organelle (in four or more colors), and the name of the organelle. In the lines below, explain in at least 5 sentences why you have chosen this cell structure to be the “Organelle of the Year” and explain the organelle’s function. TIME Organelle of the Year Page | 86 What Happens When Good Organelles Go Bad? Write a three paragraph explanation of a specific disorder that occurs when your organelle (from “Organelle of the Year!”) does not function properly. In the first paragraph, re-introduce your organelle. Name the key function(s) for which your organelle is responsible. At the end of the first paragraph, you should introduce the disorder associated with your organelle not functioning properly. In the second paragraph, you should give a detailed description of what happens to the cell due to this disorder. Follow this up with a description of what happens to the tissue, organ, and/or organism affected by this disorder. The third paragraph should explore treatment options for individuals with this disorder. If there are currently no treatment options available, suggest something that you think may work to treat individuals with the disorder. Each paragraph must contain at least five to seven sentences. Each sentence must be complete and contain relevant information, as per the instructions listed above. Page | 87 Page | 88 Page | 89 When Good Organelles Go Bad – Sample Rubric Name of Student___________________________________ Criteria 5 Thorough and complete COVER Name and picture of an animal 4-3 2-1 0 Good, but Does not lacks depth or meet sophistication expectations Missing 5 4-3 2-1 0 5 4-3 2-1 0 5 4-3 2-1 0 5 4-3 2-1 0 5 4-3 2-1 0 cell organelle with four or more colors (3) Explanation in at least 5 sentences why this cell structure was chosen to be the “Organelle of the Year” Explanation includes organelle’s function. (2) Introduces organelle (2) Name the key function(s) of the organelle (3) Introduces the disorder associated with organelle (2) Detailed description of what happens to the cell due to this disorder. (3) Describes what happens to the tissue, organ, and or organism due to the disorder (3) Treatment options for individuals with this disorder. (2) Follows conventions of English Grammar (2) Spelling and Punctuation (1) Sentence Structure (2) Point Total 25 – 23 = A 22 – 20 = B 19 – 18 = C 17 – 15 = D 14 below = F Page | 90 Cell City Analogy In a faraway city called Foothill City, the main export and production product is the steel widget. Everyone in the town has something to do with steel widget making and the entire town is designed to build and export widgets. The town hall has the instructions for widget making. Widgets come in all shapes and sizes and any citizen of Foothill can get the instructions and begin making their own widgets. Widgets are generally produced in small shops around the city. These small shops can be built by the carpenter’s union (whose headquarters are in town hall). After the widget is constructed, they are placed on special carts which can deliver the widget anywhere in the city. In order for a widget to be exported, the carts take the widget to the post office, where the widgets are packaged and labeled for export. Sometimes widgets don't turn out right, and the "rejects" are sent to the scrap yard where they are broken down for parts or destroyed altogether. The town powers the widget shops and carts from a hydraulic dam that is in the city. The entire city is enclosed by a large wooden fence, only the postal trucks (and citizens with proper passports) are allowed outside the city. Match the parts of the city (underlined) with the parts of the cell. 1. Mitochondria ________________________________________ 2. Ribosomes ________________________________________ 3. Nucleus ________________________________________ 4. Endoplasmic Reticulum ________________________________________ 5. Golgi Apparatus ________________________________________ 6. Protein ________________________________________ 7. Plasma Membrane ________________________________________ 8. Lysosomes ________________________________________ 9. Nucleolus ________________________________________ Page | 91 Cell City Analogy Extra Credit Project Instructions: Cells, the basic units of life, are often compared to a pizza parlor, a factory, or even an entire city. In this project, you will need to make analogies to compare the function of the plant cell to the parts and functions of an entire city. After determining the amount of extra credit you need, you can complete one or more of the following tasks. You must complete the tasks in series. So, if you choose, however, to complete task 3, you must also do tasks 1 and 2. Task 1: Create analogies between the cell parts and a plant cell’s city parts by completing the analogy worksheet on the following page. Use the “Foothill City” analogy as an example on how to create this analogy. A must! When making the analogies between your cell and your city, the functions of the cell part must match the function of the city structure. Appearances do not have to match. Extra Credit Points: 10 Task 2: Draw a detailed model of your cell city in color. This drawing must be neat and turned in as final draft form on plain white paper! Use a ruler for your straight edges! You must label both the part in the cell city and the cell part that’s represented with clear leader lines. Example ~ City Hall: Nucleus Extra Credit Points: 10 Task 3: Build a three-dimensional model of your cell city, with material of your choosing. Your model must not be bigger than the size of two regular sheets of blank white paper, laid side by side. (17” x 22”) You must label both the city structure and the cell structure. Your model must match the picture model in task 2: Extra Credit Points: 20 Page | 92 Cell City Analogy Extra Credit Project Task 1 Name of Student __________________________Period___________ Cell Part Function of Cell Part Part in City Explain the analogy between the cell part and city Cell Wall Plasma Membrane Ribosome Rough Endoplasmic Reticulum Smooth Endoplasmic Reticulum Golgi Apparatus Nucleus Nuclear Pore Page | 93 Nucleolus Mitochondria Chloroplast Vacuole Cytoplasm Page | 94 Cell Biology Unit Study Guide Part 1: Review Complete each of the following tasks to help yourself prepare for the upcoming test. Go back to your Cornell notes for this unit. Cover the right side of the page and attempt to answer the questions on the left side. Review any areas where you struggled or needed to look at your notes for information. Study the concept cards you created this unit. Attempt to name the cell parts on the diagrams in your notes. Review the functions of all of the organelles. Name all the ways that you can think of to distinguish a prokaryotic cell from a eukaryotic cell. Now, study the similarities and differences between plant and animal cells. Part 2: Practice 1. Write a paragraph comparing and contrasting plant from animal cells. Then, write a second paragraph comparing prokaryotic cells from eukaryotic cells. 2. List organelles/cell parts that all cells contain. Page | 95 3. In the chart below are some commonly confused cell organelles. In the empty column, explain the differences between the parts and their functions. Organelles Microvilli & Cilia Differences Mitochondria & Chloroplasts Nucleus & Nucleolus Rough ER & Smooth ER Cell wall & Plasma membrane Cytoskeleton, Centrosome, & Centriole 4. What is the difference between quantitative data and qualitative data. 5. Suggest an experiment that involves cells where the data that you gather can either be quantitative or qualitative. Describe this experiment and explain what type of data you would gather (quantitative or qualitative) and why. Page | 96 4. In the space provided, draw a prokaryotic cell, animal cell, and plant cell in color. Label the organelles with leader lines. Highlight the names of organelles that they all have in common. You will be assessed on the accuracy as well as neatness, and effort of your drawings. Page | 97 Cell Biology Unit Concept Map (see directions on page 27) Summary of Concept Map: Page | 98 Cell Unit Parent/ Significant Adult Review Page Student Portion Name Period Unit Summary (write a summary of the past unit using 5-7 sentences): Explain your favorite assignment in this unit: Adult Portion Dear Parent/ Significant Adult: This Interactive Notebook represents your student’s learning to date and should contain the work your student has completed. Please take some time to look at the unit your student just completed, read his/ her reflection and respond to the following Ask your child to explain the differences between plant, animal, and prokaryotic cells: Which activity did your student feel helped them prepare for the test? Please explain why. : Parent/ Significant Adult Signature: Comments? Questions? Concerns? Feel free to email. Page | 99 This page left intentionally blank Page | 100