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Glossary back antennae complex - The region of the chloroplast thylakoid containing a few hundred chlorophyll a, chlorophyll b and carotenoid molecules linked together by proteins embedded in the membrane. The antennae complex is the main unit involved in harvesting light energy during photosynthesis. It acts as a funnel to transfer excited electrons to the reaction center, which passes them along to the eltectron transport chain. Graphic representation of antennae complex Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back ATP (adenosine triphosphate) – A relatively stable, high energy molecule used to fuel chemical reactions within cells. ATP is the ‘universal energy carrier’ molecule in nature, performing energy exchange and energy transport functions in all living things. ATP is an adenine-containing nucleoside triphosphate that releases free energy when one of its phosphate bonds is hydrolyzed – a reaction that yields ADP, Adenosine diphosphate, as a product. The ADP is recycled to ATP through the addition of an activated phosphate group coupled to energy-producing reactions. NH2 N N O– – O P O– O P O– O P O N CH2 N O O O O OH Visualizing Cell Processes OH (rd Edition) © BioMEDIA ASSOCIATES Glossary back ATP-synthase - A protein complex embedded in the membrane of the thylakoids that produces ATP by harvesting the proton motive force – potential energy from a hydrogen ion gradient accross the thylakoid membrane. As these H+ ions channel back through ATP synthase, the enzyme system harvests the potential energy, converting it into chemical bond energy as a phosphate is added to ADP. ATP synthase performs a similar function in cellular respiration at the innner membrane of the mitochondrion. Graphic depiction of ATP synthase. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back bundle sheath cells - Cells that surround (and sheath) the vascular bundles in plant leaves. In most plants, these cells primarily provide protection for the plant’s water carrying system. However, many plants that live in hot, dry climates, have enlarged and tightly-packed bundle sheath cells. Chloroplasts in these cells are the main location for the Calvin cycle. Such plants use their mesophyll cells primarily to capture and transfer CO 2 to the bundle sheath cells. The CO 2 is incorporated into a four carbon compound, giving these plants the designation, C 4 plants. upper epidermis palisade mesophyll cells vascular tissue - vein bundle sheath cells spongy mesophyll Stoma lower epidermis air Graphic cutaway of leaf. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back C 3 plants - The ‘normal’ biochemical pathway for incorporating carbon dioxide CO 2 in plant cells involves the reaction of CO 2 with the five-carbon sugar, ribulose biphosphate. This reaction is catalyzed by the enzyme, rubisco, and the six-carbon intermediate formed rapidly splits into two molecules of the three-carbon compound, 3-phosphoglycerate. This three-carbon molecule enters the Calvin cycle - a series of linked reactions which ultimately forms new molecules of sugar for use in the plant. Most plants utilize this pathway, and are called C 3 plants in reference to the three-carbon intermediate first formed during carbon fixation. CO* CH2 C O Modes of Carbon Fixation Poster P O O- (catalyzed by) O C O rubisco CHOH CHOH CHOH CH2 C O- CH2 O O P Ribulose $%&'bisphosphate Visualizing Cell Processes CHOH P CH2 O P 'Phosphoglycerate (rd Edition) © BioMEDIA ASSOCIATES Glossary back C 4 plant - Many plants that live in hot, dry climates are adapted to overcome a shortfall of the ribulose bisphosphate/rubisco system used to fix CO 2 in photosynthesis. The problem lies in the need for these plants to shut their stomata to avoid water loss, which in turn, causes oxygen to build up and bind with rubisco, drastically cutting down the efficiency of carbon fixation. C 4 plants have enlarged and tightly-packed bundle sheath cells where chloroplasts act as the main location for the Calvin cycle. Such plants use their mesophyll cells primarily to capture and transfer CO 2 to the bundle sheath cells, which arrives in the form of a four carbon compound, giving these plants the designation, C 4 plants. C 4 plants include corn, cactuses, many suculents, and a variety of other plants. CO2 PEP carboxylase Air Space ADP Malate ATP Pyruvate CO2 Bundle Sheath Cell Calvin Cycle Sugar Vascular Tissue (Vein) Modes of Carbon Fixation Poster Visualizing Cell Processes Mesophyll Cell Oxalocetate PEP (rd Edition) © BioMEDIA ASSOCIATES Glossary back Calvin cycle - The major metabolic pathway used in plants used to turn CO 2 into sugar during photosynthesis. Carbon dioxide entering the cycle is first ‘fixed’ by reaction with a 5-carbon sugar (ribulose 1,5-bisphosphate), forming two 3-carbon intermediates. These are converted into simple 3-carbon sugars by chemical reduction. For every 3 CO 2 molecules entering the cycle, one PGAL (G3P) is removed from the cycle and used in the cell. The remaining 5 molecules of PGAL continue the cycle by re-forming 3 molecules of ribulose 5-bisphosphate, a 5-carbon intermediate. 3 CO* ( molecules of) Ribulose $%&'bisphosphate 3 ADP (+ molecules of) 'Phosphoglycerate 6 3 ATP ATP 6 ADP ( molecules of) (+ molecules of) $%'bisphosphoglycerate Ribulose &-phosphate The Calvin Cycle 2 P 6 NADH0H0 6 NAD0 6 P (& molecules of) Glyceraldehyde 'phosphate (+ molecules of) Glyceraldehyde 'phosphate (Recycled PGAL) Calvin Cycle Poster ($ molecule of) Glyceraldehyde 'phosphate (Harvested PGAL) Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES PGAL (G3P) Glossary back CAM plants - (Crassulacean Acid Metabolism Plants) - Plants that fix carbon dioxide during the night and store it as 4-carbon organic acids to be used as a source of CO 2 during the day. This group of plants includes cacti, pineapples and members of the stonecrop family, Crassulaceae (thus the name). These plants tend to live in hot dry environments, and are adapted to close their stomata during the day and open them at night, when the plant is less likely to suffer water loss. During the day, when the stomata are closed, the 4-carbon acids release CO 2 in the plant for use in the Calvin cycle. Modes of Carbon Fixation Poster Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back carbohydrates - Sugars and their sugar polymers. The general formula for a carbohydrate is (CH 2O) n. H CH 2O H CH 2O H CH 2O H CH 2O H CH 2O H CH 2O OH OH OH O OH OH OH O O OH OH O O OH OH O O O O O O Starch: a polysaccharide carbohydrate OH OH HO OH O H C H C HOCH2 CH2OH O OH HO glyceraldehyde H H OH OH glucose (cyclic conformation) Visualizing Cell Processes H H OH CH2OH OH O OH OH ribose (cyclic conformation) (rd Edition) © BioMEDIA ASSOCIATES Glossary back carbon-fixation reactions - The Calvin cycle fixes the carbon of CO 2 in a reaction that combines it with a 5-carbon sugar, ribulose bisphosphate or RuBP. The resulting six carbon intermediate is unstable and immediately splits into two molecules of 3-phosphoglycerate. Modes of Carbon Fixation Poster CO* CH2 C O P O- O C CHOH O C CHOH CHOH CH2 O- CH2 O O P Ribulose $%&'bisphosphate Visualizing Cell Processes O CHOH P CH2 O P 'Phosphoglycerate (rd Edition) © BioMEDIA ASSOCIATES Glossary back carotenoid - A pigment molecule that, like chlorophyll, captures light energy in the form of photons. Plants containing carotenoids often appear yellow-orange. O O One type of carotenoid molecule (of many different types). Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back cellular respiration - The catabolic process where cells release stored energy by breaking down complex molecules using oxygen as a reactant. In eukaryotic cells, these metabolic reactions take place in the mitochondrion. Overview of Cellular Respiration electrons carried on NADH glucose Glycolysis pyruvate electrons carried on NADH and FADH* Krebs cycle ATP Electron Transport Chain Mitochondrion ATP Cytoplasm ATP Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back chlorophyll - A pigment that captures energy from sunlight for use in photosynthesis. Chlorophyll has a porphyrin ring structure (five nitrogen-containing rings linked together) and a long hydrophobic tail. There are different kinds of chlorophyll with slightly different molecular structures – chlorophyll a, cholorphyll b and chlorophyll c. Each one absorbs a distinctive range of wavelengths absorbed. Chlorophyll a is found in all photosynthetic eukaryotes, cyanobacteria and prochlorophytes (another group of photosynthetic bacteria). Chlorophyll b is found in plants and green algae but not in diatoms, brown algae or red algae. Among prokaryotes it is present in prochlorophytes but not in cyanobacteria. Chlorophyll c is found in brown algae, diatoms, and some other single celled algae but not in plants or prokaryotes. Photosynthesis Poster Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back chloroplast – The organelle in plants, and some green algae, that contains chlorophyll A and B and is the location of the reactions of photosynthesis. Chloroplasts also store starch for use by the cell. The chloroplast is one type of plastid. Some algae (such as diatoms, brown algae, red algae, dinoflagellates, and others) have plastids where photosynthesis occurs, but these are called photosynthetic plastids, not ‘chloroplasts’. Photosynthesis Poster Photomicrograph of chloroplasts in moss cells. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back circadian rhythms - The physiological cycle of approximately 24 hours. These cycles are present in all eukaryotic organisms. Circadian rhythms persist even in the absence of external stimuli such as sunlight. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back cyclic electron flow - When photosynthesis is functioning at full capacity, electrons flow from the excited chlorophyll through electron transport chains associated with both Photosystems 2 and 1, and then on to form the reduced energy carrier, NADPH. Excited electrons from chlorophyll are replaced by electrons from water – they do not cycle back to chlorophyll directly. This is non-cyclic electron flow. Non-cyclic electron flow creates equal quantities of ATP and NADPH formed by non-cyclic photophosphorylation. A second pathway, using only Photosystem 1, allows the excited electrons to return directly to chlorophyll via the electron transfer chain. In this pathway, ATP is formed, but not NADPH, and H 2O does not supply ‘replacement’ electrons. This alternate pathway is called cyclic electron flow, and it is used when the cell requires additional ATP to compensate for increasing concentrations of NADPH created as the Calvin cycle uses more ATP than NADPH. In this pathway, the formation of ATP is called: cyclic photophosphorylation. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back cyclic photophosphorylation - When photosynthesis is functioning at full capacity, electrons flow from the excited chlorophyll through the electron transport chains associated with both Photosystems 2 and 1, and then on to form the reduced energy carrier, NADPH. Excited electrons from chlorophyll are replaced by electrons from water – they do not cycle back to chlorophyll directly. This is non-cyclic electron flow. Non-cyclic electron flow creates equal quantities of ATP and NADPH formed by non-cyclic photophosphorylation. A second pathway, using only Photosystem 1, allows the excited electrons to return directly to chlorophyll via the electron transfer chain. In this pathway, ATP is formed, but not NADPH, and H 2O does not supply ‘replacement’ electrons. This alternate pathway is called cyclic electron flow, and it is used when the cell requires additional ATP to balance increasing concentrations of NADPH created by the Calvin cycle (which uses more ATP than NADPH). In this pathway, the formation of ATP is called: cyclic photophosphorylation. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back cytochromes - A group of proteins that have an iron containing heme group integrated into their conformational structure. Cytochromes are efficient at holding electrons in the electron transport chain due to the binding capabilities of the heme group. A cytochrome complex is present in the electron transport chain of photosynthesis and several cytochromes are present in the electron transport chain of cellular respiration. Cytochrome complexes on the inner membrane of the mitochondrion Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back electron transport chain - A group of proteins embedded in the membrane of the thylakoid that harvest energy from excited electrons in Photosystem 1 and Photosystem 2. Each electron transport chain molecule oscillates between the reduced and oxidized state as it accepts and donates electrons. Some redox reactions in the chain are linked to the pumping of H+ ions across the thylakoid membrane, thereby forming the hydrogen ion gradient that drives ATP production. Graphic of electron transport proteins in thylakoid membrane. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back endosymbiont – An organism that lives symbiotically within a host is an endosymbiont. From the Greek roots endon = within, and sumbioun = living together. Many endosymbionts actually live inside the cells of their host. This form of ‘living together’ is very common among living organisms. For example, lichens are made up of symbiotic fungi and algae species. Another important example is the endosymbiotic relationship between large reef-making corals and algal cells living inside their tissues. Paramecium bursaria – a species of ciliate protozoan that harbors endosymbiotic algae. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back endosymbiotic theory – A theory describing the evolutionary origin of cell organelles such as the mitochondrion and chloroplast. The theory suggests that ancient unicellular organisms consumed other unicellular organisms through phagocytosis and that these smaller engulfed cells adapted over time to living inside the larger host cell. Eventually, the endosymbiont cells became integrated into the host cell, with host and symbiont becomming functionally interdependent. An overwhelming amount of evidence supports endosymbiotic origins for both the mitochondrion and the plastids (including the chloroplast). Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back ferredoxin - An iron-containing protein in the electron transport chain of Photosystem I in photosynthesis. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back glucose - A six–carbon aldose monosaccharide with the empirical formula C 6H 12O 6. This sugar is the major nutrient for cells. Photosynthesis makes glucose from CO 2 and sunlight. Cellular respriation and fermentation break it down for the cell’s use. O H C CH2OH H C OH HO C H H C OH H C OH H C OH O HO OH OH OH glucose (cyclic conformation) H glucose Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back glyceraldehyde phosphate (P-GAL) = glyceraldehyde 3-phosphate (G3P) - An extremely important intermediate in many energy-releasing or energy-storing reactions of the cell. Names and abbreviations for this molecule include phosphoglyceraldehyde, PGAL or glyceraldehyde 3-phosphate, G3P. In glycolysis it is formed by the splitting of fructose 1,6-bisphosphate. PGAL is then passed on to the energy-yielding phase of glycolysis. In photosynthesis, PGAL, the main sugar created by the Calvin cycle is a building block molecule for other sugars such as glucose, fructose and sucrose. 3 CO* ( molecules of) Ribulose $%&'bisphosphate 3 3 ADP 6 C H OH H C C 6 ADP ( molecules of) (+ molecules of) $%'bisphosphoglycerate Ribulose &'phosphate The Calvin Cycle 2 P 6 NADH0H0 6 NAD0 6 P (+ molecules of) Glyceraldehyde 'phosphate (Recycled PGAL) O P ($ molecule of) Glyceraldehyde 'phosphate H ATP ATP (& molecules of) Glyceraldehyde 'phosphate O (+ molecules of) 'Phosphoglycerate H Glyceraldehyde 'phosphate Calvin Cycle Poster Visualizing Cell Processes (Harvested PGAL) (rd Edition) © BioMEDIA ASSOCIATES PGAL (G3P) Glossary back grana - Stacks of thylakoids inside the chloroplast that are surrounded by the stroma. Graphic cross-section through a chloroplast showing the stacks of thylakoids that form the grana. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back ground state - The normal energy level for an unexcited molecule. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back guard cell - Cells that border the stomata in the epidermis of a leaf. The guard cells swell and shrink according to the amount of water available in the plant. When they shrink and go flaccid, the stomata pores close because there is no pressure on the guard cell walls to hold them apart. When they swell, the increased turgidity forces the stomata to open. In addition to the effects of water in the plant, guard cells are also stimulated by light, CO 2 levels and circadian rhythms. Photomicrograph of a single stoma showing the guard cells . Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back hydrogen ion gradient - A hydrogen ion gradient is created across the mitochondrial membrane by electron transport proteins pumping hydrogen ions out ot the innner mitochondrial space. A similar process takes place in the chloroplast, where H+ ions are pumped into the thylakoid space. The membrane protein, ATP synthase, can convert the potential energy in this H+ gradient (also known as the proton motive force) into chemical bond energy by catalyzing the addition of a phosphate group to ADP. This formation of ATP is thus a chemiosmotic process. hydrogen ion (H+) ATP synthase Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back light independent reactions - Also called the dark reactions of photosynthesis, these reactions take place in the stroma of chloroplasts and are independent of light absorption. The primary light-independent reactions are the reactions of the Calvin cycle, which convert CO 2 ‘fixed’ in organic molecules, into reduced sugars, utilizing the reducing power and chemical energy of NADPH and ATP produced by photosystems 1 and 2 and the electron transport chain. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back light reactions - The light-dependent reactions in photosynthesis, also called the photosynthetic electron transfer reactions, require sunlight (or artificial light) to proceed. These reactions convert solar energy into chemical energy in the form of ATP and NADPH. During these reactions, electrons from chlorophyll excited by light absorption are replaced by electrons from a water molecule in a reaction that yields H + ions and oxygen gas, O 2. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back mesophyll cell - The cells present in the mesophyll (or middle) tissue of a leaf. In most plants, mesophyll cells hold the majority of chloroplasts used in photosynthesis. upper epidermis palisade mesophyll cells bundle sheath cells Stoma lower epidermis air Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back NADPH - The reduced form of the energy carrier molecule NADP +, nicotinamide adenine dinucleotide phosphate. In photosynthesis, NADPH is produced in the photosystem electron transport chain and used up in the Calvin cycle. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back NADP + reductase - The enzyme that catalyzes the transfer of electrons from ferredoxin to NADP +, creating NADPH. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back non-cyclic electron flow - When Photosystem I photosynthesis is functioning at full Photosystem II capacity, electrons flow from the exprimary electron *e' cited chlorophyll through the electron acceptor *e' *e' primary electron ' *e transport chains associated with both *e' acceptor NADP00 el ' *e e ct Photosystems II and I, and then on to ro n *e' tr *e' NADPH an form the reduced energy carrier, sp *e' or t NADPH. Excited electrons from chloch ai *e' n sunlight energy *e' rophyll are replaced by electrons ADP from water – they do not cycle back ATP P 866 to chlorophyll directly. This is noncyclic electron flow. Non-cyclic P +56 reaction center antennae complex electron flow creates equal quantities *e' of ATP and NADPH formed by nonH*O cyclic photophosphorylation. *H0 0$/*O* A second pathway, using only Non'cyclic electron flow Photosystem 1, allows the excited electrons to return directly to chlorophyll via the electron transfer chain. In this pathway, ATP is formed, but not NADPH, and H 2O does not supply ‘replacement’ electrons. This alternate pathway is called cyclic electron flow, and it is used when the cell requires additional ATP to compensate for increasing concentrations of NADPH created by the Calvin cycle (which uses more ATP than NADPH). In this pathway, the formation of ATP is called: cyclic photophosphorylation. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES H0 Glossary back non-cyclic photophosphorylation - When photosynthesis is functioning at full capacity, electrons flow from the excited chlorophyll through the electron transport chains associated with both Photosystems II and I, and then on to form the reduced energy carrier, NADPH. Excited electrons from chlorophyll are replaced by electrons from water – they do not cycle back to chlorophyll directly. This is non-cyclic electron flow. Non-cyclic electron flow creates equal quantities of ATP and NADPH formed by non-cyclic photophosphorylation. A second pathway, using only Photosystem 1, allows the excited electrons to return directly to chlorophyll via the electron transfer chain. In this pathway, ATP is formed, but not NADPH. Also, H 2O does not supply ‘replacement’ electrons. This alternate pathway is called cyclic electron flow, and it is used when the cell requires additional ATP to compensate for increasing relative concentrations of NADPH created by the Calvin cycle (which uses more ATP than NADPH). In this pathway, the formation of ATP is called: cyclic photophosphorylation. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back PEP carboxylase - The enzyme that catalyzes the addition of CO 2 to phosphoenolpyruvate (PEP) to form the four-carbon compound, oxaloacetate. Oxaloacetate can then store and transfer the CO 2 into other cells where it can enter the Calvin cycle. This carbon-fixation pathway is used primarily by certain plants adapted to dry, hot conditions; plants appropriately called C 4 plants in reference to the four-carbon intermediates, oxaloacetate and malate. CO2 PEP carboxylase Air Space Mesophyll Cell Oxalocetate PEP ADP Malate ATP Pyruvate CO2 Bundle Sheath Cell Calvin Cycle Sugar Vascular Tissue (Vein) Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back phosphoenolpyruvate (PEP) - In glycolysis, CO2 a three-carbon intermediate that results from the removal of water from 2-phosphoglycerate by the enzyme enolase. In preparation for the light-independent reactions of photosynthesis, some plants fix CO 2 by reaction Air Space with PEP to form a four-carbon compound, oxaloacetate. Plants that use this pathway to fix carbon are called C4 plants. PEP carboxylase Mesophyll Cell Oxalocetate PEP ADP Malate ATP Pyruvate CO2 Bundle Sheath Cell Calvin Cycle OC O C O Sugar P CH2 Phosphoenolpyruvate Visualizing Cell Processes Vascular Tissue (Vein) Carbon fixation in C4 plants. (rd Edition) © BioMEDIA ASSOCIATES Glossary back photophosphorylation - ATP synthesis driven by light energy. Non-cyclic photophosphorylation involves both Photosystem 1 and Photosystem 2 and yields ATP and NADPH and results in the production of O 2. Cyclic photophosphorylation cycles energized electrons back into the electron transport chain from Photosystem 1, producing ATP but producing no NADPH or O 2. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back photorespiration - Although the enzyme ribulose bisphosphate carboxylase, Rubisco, adds CO 2 to ribulose 1,5 bisphosphate, it can also bind with oxygen when CO 2 concentration is low and O 2 concentration is high. When this happens, a series of reactions called photorespiration takes place, releasing CO 2 but producing no ATP or useful energy for the cell. Photorespiration becomes a serious problem in hot dry climates when plants shut down their stomata to conserve water - leading to the build up of O 2 and lack of CO 2. C4 pathways and CAM pathways are adaptations in some plants that respond to the potential problems created by photorespiration pathways. Modes of Carbon Fixation Poster Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back photosynthesis - The process of harnessing the sun’s light energy with chlorophyll and other pigment molecules and converting it into chemical energy in the form of sugars. Photosynthesis involves two sets of biochemical pathways: 1) the light-dependent reactions in which light energy is converted to chemical energy in the energy carrier molecules, ATP and NADPH and 2) the light-independent reactions, in which the energy contained in the energy carriers is used to fix carbon dioxide and convert it (through chemical reduction) into sugar storage molecules. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back photosystem - A complex of proteins and chlorophyll molecules that catalyzes the conversion of light energy into chemical energy in photosynthesis. There are two photosystems, Photosystem 2 (also called P680) and Photosystem 1 (also called P700). Each consists of a reaction center – a complex of proteins and chlorophyll where light energy is trapped for conversion into chemical energy – and an antenna complex – a system of light-absorbing pigments that feed excited electrons to the reaction center. The excited electrons are transferred to proteins in the electron transport chain. Photosystem I Photosystem II primary electron acceptor *e' *e' el ec sunlight energy *e' primary electron acceptor *e' tr *e' *e' on tr an *e' sp or *e' *e' tc *e' ha in NADP00 H0 NADPH *e' ADP ATP P +56 reaction center P 866 antennae complex *e' H*O *H0 0$/*O* Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back pigments - Substances that absorb visible light. Different pigments absorb different wavelengths of light. The capture of light by a pigment moves an electron in the bonding system of the absorbing molecule to a higher energy, or ‘excited’, state. In photosynthesis, the excited state electrons are captured, and their energy converted into chemical bond energy. A number of pigments are involved in light capture in photosynthesis including: chlorophylls, xanthophylls, carotenoids and phycobilins. Photosynthesis Poster Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back primary electron acceptor - The first molecule to accept electrons from the reaction center during redox reactions after the electrons are excited to a higher energy level by light energy. The primary electron acceptor traps the excited electron before it can return to chlorophyll, and subsequently return to the ground state. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back reaction center - A complex of proteins and chlorophyll where light energy is trapped for conversion into chemical energy. The excited electrons are transferred to proteins in the electron transport chain. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back redox reaction - Reactions in which electrons are transferred from one atom (in one compound) to another atom (in a different compound). In all redox reactions both oxidation (loss of electrons) and reduction (gain of electrons) take place. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back ribulose bisphosphate (RuBP) - In photosynthesis, the five carbon sugar that reacts with carbon dioxide to initiate the fixation of carbon in the Calvin cycle. The intermediate formed by the addition of CO 2 breaks apart into two 3-carbon 3 compounds. Eventually, a 3-carbon sugar, PGAL, is formed for each 3 molecules of CO 2 entering the cycle, and ribulose bisphosphate is regenerated. CH2 O 3 CO* Calvin Cycle Poster ( molecules of) Ribulose $%&'bisphosphate 3 ADP (+ molecules of) 'Phosphoglycerate 6 6 ADP ( molecules of) (+ molecules of) $%'bisphosphoglycerate Ribulose &'bisphosphate The Calvin Cycle P 2 P C (& molecules of) Glyceraldehyde 'phosphate P Ribulose $%&'bisphosphate Visualizing Cell Processes 6 NAD0 (+ molecules of) Glyceraldehyde 'phosphate CHOH O 6 NADH0H0 6 P O CHOH CH2 ATP ATP ($ molecule of) Glyceraldehyde 'phosphate (rd Edition) © BioMEDIA ASSOCIATES Glossary back ribulose bisphosphate carboxylase, rubisco - In photosynthesis, the enzyme of the Calvin cycle that catalyzes the addition of CO 2 to ribulose bisphosphate to yield an intermediate that quickly splits into two 3-carbon compounds. Found in all photosynthetic organisms, rubisco is probably the most abundant enzyme on Earth. Calvin Cycle Poster CO* CH2 C O P O O- (catalyzed by) O C O rubisco CHOH CHOH CHOH CH2 C O- CH2 O O P Ribulose $%&'bisphosphate Visualizing Cell Processes CHOH P CH2 O P 'Phosphoglycerate (rd Edition) © BioMEDIA ASSOCIATES Glossary back starch - a storage polysaccharide in plants. Starch is made up entirely of monomers of glucose molecules joined by glycosidic linkages. The simplest form, amylose, is unbranched. Amylopectin is a more complex branched polymer of starch. Plants store starch as granules in plastids. Starch represents stored energy, because glucose is a major cellular fuel. H CH 2O H CH 2O H CH 2O H CH 2O H CH 2O O O OH O OH OH OH H CH 2O OH OH OH O O OH OH O O O O O O OH OH Starch: a polysaccharide carbohydrate OH HO OH Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back stomata (singular - stoma) - Pores in the epidermis of the underside of a leaf that regulate gas exchange. Photomicrograph of a group of stomata . Visualizing Cell Processes A single stoma showing the guard cells . (rd Edition) © BioMEDIA ASSOCIATES Glossary back stroma - The dense inner fluid of the chloroplast that supports the grana. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back sucrose - The disaccharide made of glucose and fructose monomers with a glycosidic linkage connecting them. CH2OH HOCH2 O O HO OH HO O OH Visualizing Cell Processes CH2OH OH (rd Edition) © BioMEDIA ASSOCIATES Glossary back thylakoid - One of a series of membrane-surrounded sacs, stacked together in sandwichlike structures called grana within the chloroplast. Thylakoid membranes provide the surface for the light reactions of photosynthesis, while the space surrounding the thylakoids, the stroma, is the location of the light-independent reactions of photosynthesis. Cutaway graphics of the chloroplast showing thylakoids. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back thylakoid space - The compartment inside the thylakoid disc, surrounded by the thylakoid membrane. Like the inter-membrane space of the mitochondrion, this space provides a closed reservoir where hydrogen ions, H+, are pumped in as electrons travel through the electron transport chain. The hydrogen ion gradient provides a proton motive force of potential energy to drive the synthesis of ATP. Thylakoid membrane with embedded proteins of the electron transport chain Graphic cutaway of the thylakoid. Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back visible spectrum - The visible spectrum includes all the wavelengths of light that can be seen by the human eye. These wavelengths vary from 380 to 750 nm. When combined, these colors produce white light. Photosynthesis Poster $6'& nm $6' nm Gamma rays X'rays $6 nm $ nm UV $6+ nm:: Infrared $6? nm Microwaves $6 m Radio waves Visible Light 56 nm: ;&6 nm &66 nm &&6 nm +66 nm +&6 nm 866 nm 8&6 nm The Visible Light Spectrum with Wavelength in Nanometers Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES Glossary back wavelength - The distance between the crests of electromagentic waves. Wavelength measurements range from less than a nanometer, nm (gamma rays), to more than a kilometer, km (radio waves). $6'& nm $6' nm Gamma rays X'rays $6 nm $ nm UV $6+ nm:: Infrared $6? nm Microwaves $6 m Radio waves Visible Light 56 nm: ;&6 nm &66 nm &&6 nm +66 nm +&6 nm 866 nm 8&6 nm The Visible Light Spectrum with Wavelength in Nanometers Visualizing Cell Processes (rd Edition) © BioMEDIA ASSOCIATES