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Innovation Realized 2017 Impact Report > SOSCIP pairs academic and industry researchers with advanced computing tools to fuel Canadian innovation > Contents 2 Five Years of Impact 4Health Fighting diseases that no longer respond to treatment Straight from the heart 6 Digital Media Measuring our place in the universe with big data Ryerson researcher using smart analytics to protect smart meter data 8Cybersecurity Designing an unbreakable code Evolving the infrastructure of cybersecurity 10 Advanced Manufacturing Teaching computers to see at the nanoscale Looking beyond the surface 12 Digital Media Curating science for discovery 14 SOSCIP at a Glance 16 IBM Research Spotlight York researcher transforming video streaming with big data McMaster researcher to “clean” big data 18 OCE-SOSCIP Smart Computing R&D Challenge 20Cities Western professor taking wind research to new heights Innovation Realized © SOSCIP 2017 The cover is a tribute to an early Canadian technological invention – the telephone. This innovation was first realized by Alexander Graham Bell on March 10, 1876. Over the course of 140+ years, this innovation has evolved and continues to be fundamental to global communication. Within these pages are stories of innovation that have been made possible through collaborative research and development between academic and industry partners using advanced computing technologies. Our hope is that by supporting and celebrating these stories, we can help them realize their innovation. 21Health The right treatment at the right time 22 Expanding the Ecosystem OCAD University, Seneca College, University of Guelph 25Platforms The right tools for the job 26 The Future of SOSCIP 28Credits SMART COMPUTING SOSCIP FORIMPACT INNOVATION 2017 <1 FIVE YEARS OF IMPACT Message from the Co-Chairs SOSCIP was established five years ago in 2012 with a vision for creating a “new kind of collaborative research partnership” to address important societal issues using advanced computing technologies. The partnership sought to bring together academic institutions in Ontario with industry partners and provide them with sophisticated tools, resources and expertise – barriers that many small- and medium-sized companies (SMEs) face as they seek innovative approaches to solve complex problems. The vision was that in doing so, we could make a difference in the lives of Canadians by contributing to job creation, supporting emerging start-ups, bringing new products and services to market more efficiently, and growing the talent pool of highly-qualified personnel (HQP) necessary to help drive Canada’s and Ontario’s Innovation Agendas. In five short years, SOSCIP has achieved tremendous success towards that vision – thanks in great part to the support of our partners and the collaborative efforts of our members. Since the last Impact Report was released in 2014, SOSCIP has doubled its membership to include all of Ontario’s most research-intensive academic institutions, all while expanding our industry partners and the number of trainees gaining valuable data science experience and skills. This growth would not have been possible without support from the Federal Economic Development Agency for Southern Ontario (FedDev), the Province of Ontario, IBM Canada Ltd. and Ontario Centres of Excellence (OCE). In addition, the dedication and commitment of SOSCIP’s Board of Directors, Scientific Advisory Committee and Operations Team have been instrumental to the success of the SOSCIP collaborative model. We look forward to SOSCIP continuing to provide an essential platform for innovation in Canada for many years to come. Sincerely, Professor Vivek Goel Vice-President, Research & Innovation University of Toronto Co-Chair, SOSCIP Board of Directors 2> SOSCIP IMPACT 2017 Professor John Capone Vice-President (Research) Western University Co-Chair, SOSCIP Board of Directors Message from the Executive Director A large part of SOSCIP’s value proposition is in providing access to a powerful suite of advanced computing and data science technologies to innovative companies developing new products and services to address important issues facing society. The real heart of SOSCIP’s value, however, lies beyond the technology offerings. We draw on expertise, talent, resources, and networks from across the consortium to provide “cradle to grave” support to all of our collaborative projects. Significant project development, business development, project management, technical support and expertise and funding for the development of HQP is also provided. Every project benefits from the deep expertise of the broad SOSCIP Operations and Technical Support teams, which includes SOSCIP consortium staff, a dedicated business development team at OCE, the IBM Canada R&D Centre team, and the technical and research staff of our partner Compute Ontario facilities [Centre for Advanced Computing (Queen’s University), SciNet (University of Toronto) and SHARCNET (Western University)]. The result is that, in addition to full access to powerful computing technologies, every SOSCIP project receives countless hours of handson, dedicated support from some of the best experts in the country. This SOSCIP 2017 Impact Report demonstrates that our model of collaborative R&D is making a difference. Included in this Report are impact stories from across our member institutions, showcasing the diversity of projects and partnerships that we support, as well as the significant contributions of our partners OCE and IBM. Our centrepiece “SOSCIP at a Glance” (see pg. 14-15) provides an overview of some of our most meaningful measures of SOSCIP’s impact since 2012. The take home message of this Report is that SOSCIP is a collaborative research platform that supports great Canadian innovation. As we look towards the future, we plan to continue building on our success, engaging new sectors and industries and developing strong partnerships with likeminded organizations. We welcome you to join us as SOSCIP embarks on our next five years of impact. Elissa Strome Executive Director, SOSCIP SOSCIP IMPACT 2017 <3 Fighting diseases that no longer respond to treatment > Researchers: Frank Dehne and Ashkan Golshani, Carleton University Supported by: SOSCIP, IBM Canada Ltd., OCE, FedDev Website: http://www.designedbiologics.com 4> SOSCIP IMPACT 2017 Ashkan Golshani (left) and Frank Dehne Photo (left) submitted by Justin Tang; story submitted by Susan Hickman A computer scientist and a biochemist at Carleton University have teamed up to start a company that designs therapeutic peptides derived from human proteins – drugs that may offer a new way of treating complex diseases that no longer respond to treatments. Profs. Frank Dehne and Ashkan Golshani registered Designed Biologics in February 2016. The company will push development of special small peptides that can target specific proteins involved in various human diseases. When they first put their heads together at the graduate pub on campus 15 years ago, Prof. Golshani was working in the novel field of systems biology looking for ways to speed up costly time- and energy-consuming protein interaction experiments. If you consider each human being has 20,000 proteins, there are 200 million possible combinations of interaction. Prof. Dehne used computations to predict these protein interactions and developed a prediction algorithm based on his hypothesis that smaller sequences of molecules could facilitate some of the protein interactions. “It turns out there are a lot of these different types of interactions that were being missed,” explains Prof. Dehne. The findings may impact a pharmaceutical industry that has traditionally focused on antibody- and chemicalbased therapies. After calculating the entire 200 million human protein interactions, they may be at the forefront of designing new pharmaceuticals using significantly smaller molecules that can attach to specifically targeted proteins — the culprits causing illnesses. Designed Biologics continues to leverage SOSCIP’s advanced computing technologies to develop small peptides containing between 30 and 75 amino acids that can hit targets not responding to traditional drugs. These “smart biologics” will focus on alternative binding characteristics to engage disease-fighting mechanisms in the human body in a new way that should result in fewer side effects for the patient. The pair announced in October 2016 that Designed Biologics will collaborate with NuvoBio, a subsidiary of Zim Corporation, to implement a unique molecular interaction analytics approach to design small peptide drugs that bind target proteins. The result could be used to treat prostate cancer with fewer side effects. “In theory, we can target all kinds of cancer with these new designed drugs, as well as inflammation and any complex human disease such as diabetes or Alzheimer’s,” said Prof. Golshani. Straight from the heart The human body emits millions of physiologic signals, much of which is conventionally believed to be noise, but what if these signals could provide a deeper understanding of our biology and distinguish a healthy heart from a diseased one, even before symptoms appear? That is precisely what Analytics 4 Life (A4L) is trying to achieve. A4L is using advanced signal processing techniques to identify and assess diseases, particularly coronary artery disease. Traditionally, patients have to endure a nuclear stress test to evaluate the heart’s blood flow. The invasive test can take hours to days to deliver test results. A4L’s approach involves machine learning on non-invasive, passively collected signals for heart function. The process of signal collection results in no discomfort to the patient, and is easy to use for the health care provider. If successful, A4L’s device will streamline the process of identifying cardiac dysfunction to mere minutes and have the results available to the patient’s doctor the same day, with no exposure of the patient to radiation. A4L is the brainchild of founder and chief scientific officer Sunny Gupta (pictured). Coming from a family with a history of heart disease, he wanted to know what information might be taken from the heart’s signals. The idea derived from the research of Prof. Terence Ozolin at Queen’s University who sought Gupta’s help in identifying diseased hearts in developing mice with pre-existing conditions. Gupta used machine learning to determine which mice would eventually demonstrate the conditions they were born with. “With 50,000 physiologic signals, we needed more horsepower,” explained Shyam Ramchandani, vice-president, clinical affairs. “SOSCIP and IBM provided the cloud infrastructure and the computers that we needed,” said Gupta. The team was able to predict which mice would develop heart conditions later in life. Gupta founded A4L out of a small room above Chalmers United Church in Kingston, Ontario, and incorporated in July 2012. The company has since expanded to multiple office locations across Ontario and has raised over C$20 million from investors. A4L holds three issued U.S. patents with eighteen more U.S. and international applications pending and have been cleared for testing the device on humans in the U.S. They hope to complete the clinical trials by the end of 2017. The team perform mathematical extrapolations from the signals and convert them into 3D shapes that have geometric form. They can use these forms to identify and pinpoint disease. If successful, the device may be able to be used to examine countless other diseases and conditions. > Founder: Sunny Gupta Supported by: SOSCIP, IBM Canada Ltd., OCE, FedDev, Province of Ontario and private investors Website: www.analytics4life.com SOSCIP IMPACT 2017 <5 Measuring our place in the universe with big data A UofT professor and his team are pondering our precise place in the universe. Prof. Ue-Li Pen, also director of the Canadian Institute for Theoretical Astrophysics, is developing a new initiative to commercialize radio signal processing technology. “We work with Thoth Technology to collect radio data from Canadian telescopes such as the Algonquin Radio Observatory. The data gets analyzed by the Blue Gene/Q (BGQ) which opens up new tools to achieve and unprecedented precision of telescopic measurements. “We are pushing the frontier of the ability to localize things more precisely than ever before,” he explained. The project was part of the Smart Computing R&D Challenge, a $7.5 million initiative led by OCE, SOSCIP and NSERC, to provide academic and industry researchers with access to advanced computing tools (see pg. 18 for more details). The project aims to develop new very long baseline interferometry (VLBI) tools that will implement and optimize multi-telescope correlation and analysis software. One of the most accurate techniques for measuring the earth’s orientation in space, it uses two or more telescopes widely separated across the earth to receive and record radio signals. The goal is to develop the very first real-time web-based interface that will enable virtual visual and audio access to a radio telescope and the data that VLBI can provide to researchers, space agencies and other government departments. These tools will enable Thoth Technology Inc., a Canadian space company that specializes 6> SOSCIP IMPACT 2017 in space application services, the potential to deliver commercial turnkey VLBI to domestic and international customers. The research is conducted at the Algonquin Radio Observatory, the largest radio telescope in Canada with a 46-meter aperture, and one of the largest in the world. It was the first telescope to demonstrate VLBI, together with the John A. Galt 26-m telescope in Penticton, B.C., an achievement recognized by an IEEE milestone. The team includes graduate and under graduate students: Ryan Mckiven, Robert Main, Daniel Baker, Dana Simard, Victor Chan and SOSCIP-TalentEdge Fellow John Antoniadis. PhD student Dana Simard is using the BGQ to make predictions of the scattering of pulsars, very precise neutron stars which are useful for keeping time and confirming the existence of gravitational radiation. Two Nobel prizes have been awarded for pulsar research. “If we can use the analytics to predict the scattering we can better study and understand the interstellar medium and use the galaxy as a giant cosmic telescope,” she explained. “What used to take us a thousand days can now be achieved in a day,” agreed Prof. Pen. > Researcher: Ue-Li Pen, University of Toronto Industry partner: Thoth Technology Inc. Supported by: SOSCIP, IBM Canada Ltd., OCE, FedDev, NSERC, CFI, Province of Ontario Ryerson researcher using smart analytics to protect smart meter data How we use energy reveals much about everyday behaviour – from our work/ school schedules to when we are likely to be sleeping, eating and performing simple chores such as laundry or washing dishes. It even reveals when we are on vacation. While this information in the wrong hands could put us at risk, it also plays an important role in reducing our carbon footprint and conserving energy. Power generation companies use information derived from microclimate, small areas within general climate zones, to accurately predict power generation needs. Microclimate information is obtained by analyzing energy consumption data sent by the smart meters from our homes to utility companies. With more than one million smart meters installed in Ontario homes since 2010, it’s necessary to find ways to ensure the data captured by smart meters is protected and secured. Prof. Andriy Miranskyy from Ryerson University’s department of computer science, and his team, are conducting research to help power generation companies capture the data they need to accurately make these predictions while also respecting consumers’ privacy. The team includes IBM Canada’s Dr. Biruk Habtemariam, Prof. Ali Miri from > Ryerson University, Prof. Saeed Samet from Memorial University and Prof. Matt Davison from Western University. Their goal is to develop data aggregation and obfuscation techniques that will prevent privacy violation, yet yield the information needed for accurate prediction of power consumption. “This will enable utility companies to open up data to external groups without jeopardizing the privacy of the millions of people they’re collecting data from,” explained Prof. Miranskyy. Through SOSCIP’s Cloud Platform, they can develop and test an algorithm using simulated data which will allow them to predict electricity usage in near-real time by a third party while keeping the data secure. “Essentially, the secure linear regression algorithm allows researchers to compute numbers without actually being able to view those numbers. This allows utility companies and other third parties to provide better services to Ontario residents, leading to energy conservation and reduced infrastructure costs.” The team’s work, Privacy Preserving Predictive Analytics with Smart Meters, has been published in the Proceedings of the 5th IEEE International Congress on Big Data, 2016. Researcher: Andriy Miranskyy, Ryerson University Industry partner: IBM Canada Ltd. Supported by: SOSCIP, IBM Canada Ltd., OCE, FedDev, Ryerson University’s Faculty of Science SOSCIP IMPACT 2017 <7 Designing an unbreakable code According to IBM, more than 2.5 billion gigabytes of digital data is generated every day. This includes emails, text messages, voice and video data and other types of digital information. Keeping this information secure costs companies and governments billions every year and relies on talent, determination and supercomputers. At Wilfrid Laurier, Prof. Ilias Kotsireas is conducting research to build the cryptographic infrastructure needed to keep data secure. His research involves searching for particular sequences that have ideal characteristics with respect to their autocorrelation values. Autocorrelation is a measure of how similar a sequence is with itself. Where sequences of specific lengths are not known to exist via known theoretical construction methods, the only way to find them is to employ computational algorithms. “People are interested in these sequences because their existence has consequences and implications for security,” explained Prof. Kotsireas, who is director of the Computer Algebra Research Group at Laurier. “Using Canada’s fastest computer will allow Dr. Kotsireas to make important progress in the area of combinatorial designs,” said Dr. Robert Gordon, vice president, research, Wilfrid Laurier. “We are delighted to support partnerships such as SOSCIP to support his innovative work.” Through the BGQ, algorithms have exhibited a 2000-fold speedup, which considerably increases the speed and efficiency of Prof. Kotsireas’ research. He has developed highly parallelized code and was able to use all BGQ’s 65,536 cores in a single run. “Metaprogramming is a reliable technique to produce bugfree millions of lines of C code that go into the project,” said Prof. Kotsireas, adding that these problems will be useful in designing cryptographic protocols. “The adversary would have to perform exhaustive searches which could take even automated code breakers forever.” “You have to think of the adversary as someone with infinite resources and infinite time.” Indeed, he admits the security of cryptosystems has become a very active and competitive area of research, but one that has been nurtured by mentors, Prof. Dragomir Djokovic, his main collaborator, and Prof. Jennifer Seberry, the “Mother of Cryptology” in Australia. > Researcher: Ilias Kotsireas, Wilfrid Laurier University Industry partners: Maplesoft and IBM Canada Ltd. Supported by: SOSCIP, IBM Canada Ltd. 8> SOSCIP IMPACT 2017 Prof. Kotsireas is seeking to achieve the solution of the famous open problem, the construction of a Hadamard matrix of order 686 (pictured). Evolving the infrastructure of cybersecurity “It is imperative that this quantum threat is mitigated before it becomes a reality.” With activities like online banking and shopping on the rise, Canada will require adept problem solvers to develop secure protocols and encryption software to protect sensitive data. “The world is going to need programmers and problem solvers,” said Olivia Di Matteo, a second year PhD student at the University of Waterloo. Di Matteo is working with Prof. Michele Mosca to develop software for quantum circuit synthesis, a process that “translates” arbitrary quantum operations into a set of instructions that can run on a quantum computer. The project supports start-up company evolutionQ which provides cybersecurity risk assessments. EvolutionQ was co-founded by Profs. Mosca and Norbert Lütkenhaus, from the University of Waterloo. With access to SOSCIP’s BGQ, the team were able to solve big problems quickly. “There weren’t enough processors to solve the problems that were interesting to us. The software is largely parallel, so we needed a lot of time and processors. Because we were able to get so many processors working together, our run time changed from a week to a couple of minutes,” said Di Matteo. Case in point, the biggest program the team ran took 4000 processors and 21 hours, a project which would have taken weeks or longer on standard systems. Di Matteo, who is a recipient of an NSERC Canada Graduate Scholarship for her PhD studies, also credits SOSCIP’s expert knowledge. “I had a little training in HPC but not in parallel computing and we needed to learn how to make all of the processors talk to each other effectively. The technicians were helpful in understanding how to best take advantage of the technology. If I got stuck and didn’t know if my method was efficient, I had someone to get suggestions from.” For Prof. Mosca, now is the time for this research. “We’re trying to develop the foundation of a software industry that I hope Canada can be a world leader in. “Our research directly impacts cybersecurity, since the currently deployed cryptographic infrastructure, which underpins cybersecurity, will be compromised by a large scale quantum computer. It is imperative that this quantum threat is mitigated before it becomes a reality,” explained Prof. Mosca. — M ichele Mosca University of Waterloo > Researchers: Michele Mosca, University of Waterloo and Olivia Di Matteo, PhD student Supported by: SOSCIP, IBM Canada Ltd., NSERC, University of Waterloo Website: http://www.evolutionq.com SOSCIP IMPACT 2017 <9 Teaching computers to see at the nanoscale “If we really want to do bottom-up design of a material, we need to be able to find a cheap and easy way to model them.” — I saac Tamblyn UOIT > Researcher: Isaac Tamblyn, University of Ontario Institute of Technology Supported by: SOSCIP, IBM Canada Ltd., FedDev 10> SOSCIP IMPACT 2017 Photo (top) submitted by Isaac Tamblyn A UOIT researcher is combining machine learning with computational modelling to accelerate the discovery of new materials important for renewable energy. Prof. Isaac Tamblyn is using computer vision and AI to reduce the cost and complexity associated with modelling ‘designer’ materials on a computer. Doing so may improve the efficiency and enhance the quality of materials vital to aerospace and healthcare industries. “Knowing only the elemental composition of a material, it’s now possible to simulate many of its properties (e.g. electrical conductivity, colour, how strong it is),” he explained. “If we really want to do bottom-up design of a material, we need to be able to find a cheap, easy way to model them.” Using the BGQ and Cloud, he is able to train computers to make accurate approximations of difficult problems in material science while building an extensive material database. The training approach is similar to Google’s object recognition algorithms – where computers have been trained to recognize the faces of users in photographs. “If you want to teach a computer the difference between cats and dogs, you need a lot of pictures of each. The same is true with materials. In order to develop approximate models of materials, we need to generate really accurate data first.” The project could support important breakthroughs by others in materials design, which is critical since not everyone has access to supercomputers and some calculations take as many as five million computing hours. His team is now investigating how to make carbon a better catalyst for water-splitting, a process that could be used to develop clean, renewable energy capable of powering electronic devices and fueling vehicles. Nataliya Portman, a former post-doctoral fellow for the project, gained valuable skills as a data scientist through her approach combining mechanics and machine learning. “This project allowed me to develop technical skills in HPC, GPU programming and big data management, and advance my knowledge of deep learning methods,” she said. Portman now works as a lead data scientist for a company in Toronto. Shiva Gholami is currently working as the team’s postdoctoral fellow. When the research is complete, Prof. Tamblyn is hoping to perfect a validated machine learning model capable of rapidly determining the electronic structure and physical characteristics of catalytic surfaces. Prof. Tamblyn’s students will use the model to launch a start-up company in 2018 targeted at industries that can benefit from high-tech material design, such as defence, aerospace and health. Butterfly Gamma image submitted by Antonio Cala Lesina Looking beyond the surface Researchers at the University of Ottawa and the Royal Canadian Mint are collaborating to better understand how to explain the rich colours recently created on Canadian coins using lasers. The research stems from a technique used by the Royal Canadian Mint to add colour to metal surfaces, without the need for adding dyes or paints. “While they had a pretty good empirical knowledge of how to get a desired colour, it was not understood why a chaotic, disordered array of nanometer-sized particles produced such a reliable colour,” explained Lora Ramunno, an associate professor with the University of Ottawa and a Canada Research Chair in Computational Nanophotonics. “I recognized there was a large role for computer simulation to bring about that understanding and our team had the skills to be able to do that.” Prof. Ramunno used SOSCIP’s IBM BGQ supercomputer to run large-scale computations to better understand how light interacts with matter at nanoscale dimensions. With a patent application underway, Prof. Ramunno credits SOSCIP for providing access to machines that she describes as “unparalleled in Canada.” “SOSCIP facilitates research that wouldn’t otherwise be possible,” she said. “We can run computer simulations on thousands of processors at once that we would not have been able to do otherwise. “It also provided us with the funding to bring in highly-qualified people to work on our projects. We received funding to hire an outstanding post-doctoral fellow from Italy, Antonio Cala Lesina. Cala Lesina says he feels grateful to be part of the team and that SOSCIP has provided “everything that a computational researcher could ask for.” “I love understanding the concept of how light interacts with materials. The process produces visually striking metallic surfaces, but it’s also a complex, interesting problem from a research point of view as well,” explained Prof. Ramunno. Understanding the science behind the colour could produce many future innovative applications for advanced manufacturing in Canada and beyond. Prof. Ramunno and her team are looking at other new processes, for applications such as biosensing, to discover how a surface can change colour based on its environment. Prof. Ramunno’s research team includes Pierre Berini, a University Research Chair in Surface Plasmon Photonics and director of the Centre for Research in Photonics, as well as Arnaud Weck, associate professor in mechanical engineering, whose research group created these colours on coins for the Royal Canadian Mint. > Researchers: Lora Ramunno and Pierre Berini, University of Ottawa Industry partner: Royal Canadian Mint Supported by: SOSCIP, IBM Canada Ltd., FedDev, NSERC SOSCIP IMPACT 2017 <11 Curating science for discovery A professor with the University of Windsor is working on a collaborative SOSCIP research project that will have the potential to bring about scientific and medical discoveries much sooner. Jianguo Lu, a professor with the department of computer science, is collaborating with Meta, a Toronto-based company that applies artificial intelligence to curate the world’s scientific and technical information. Prof. Lu is building a tool called a semantic scholar assistant, which will enhance the user experience for researchers and provide them with access to a vault of millions of academic papers. “The semantic scholar assistant is a modern search engine to help researchers find relevant information and knowledge,” explained Prof. Lu. Prof. Lu says that researchers are currently limited to syntactic-based or keyword-based search engines but the semantic scholar assistant is designed to go beyond that to provide a tailored experience unique to the researcher’s focus area. “The semantic scholar assistant is not just a search engine, it will read and understand your requirements and make recommendations. It will understand researchers’ personal interests and tap into their academic social networks,” he explained. Working with a team that includes Prof. Ziad Kobti, also at the University of Windsor, as well as three PhD students, Prof. Lu explains the experience is meaningful and important in developing useful data mining techniques that can further drive innovation. “SOSCIP has been helpful in that they have provided lots of resources. We have millions of academic papers to process and they are able to connect us with experts to develop very complicated algorithms that can process massive amounts of data,” said Prof. Lu, who is currently accessing the Cloud Analytics platform. Industry partner Meta has caught the eye of others, including founder and CEO of Facebook, Mark Zuckerberg, and his wife, Priscilla Chan. The Chan Zuckerberg Initiative, which is dedicated to advancing human potential and promoting equal opportunity with a focus on scientific research, education and strong communities, announced on Jan. 24, 2017, that it was acquiring Meta. The Initiative’s goal is to “cure, prevent, or manage all diseases by the end of this century.” This is the second SOSCIP research project to involve industry partner, Meta. Meta was introduced to SOSCIP in 2014 through a collaborative research project with Prof. Kelly Lyons, University of Toronto. “The opportunity to work with them [Meta] was amazing,” explained Prof. Lyons. Since the initial project, members of her team have gone on to advance their careers in research and industry. “As a researcher, it’s getting increasingly more difficult to access the right information when you need it,” said Prof. Lyons, adding: “It’s lovely to see all of their hard work and tremendous innovation recognized.” For both Profs. Lu and Lyons, the project is rewarding in the potential impact it could have in furthering advances in the field of medicine and science. > Researchers: Jianguo Lu and Ziad Kobti, University of Windsor Industry partner: Meta Inc. Supported by: SOSCIP, IBM Canada Ltd. 12> SOSCIP IMPACT 2017 IoT Artificial intelligence Simulation SOSCIP is helping data driven companies develop innovative products and services and train the next generation of data science talent in Ontario. > Big data Real-time analytics HPC Deep learning Modelling SOSCIP IMPACT 2017 <13 SOSCIP AT A GLANCE SOSCIP Impact 2012-17 2012 Number of unique SME partners engaged in collaborative R&D projects 2014 2017 Total 62 Number of industryacademic collaborative projects launched Total Number of highly-qualified trainees developing skills and expertise in data science through SOSCIP projects Total 107 454 Numbers as of April 1 each year 14> SOSCIP IMPACT 2017 > SOSCIP Milestones 2012-2017 2012 Apr 10, 2012 2014 With funding from FedDev, Province of Ontario and IBM, SOSCIP launches with 7 founding member institutions and IBM Canada as lead industrial partner. Apr 14, 2014 SOSCIP announces 4 new member institutions + 4 new focus areas (advanced manufacturing, cybersecurity, digital media and mining). 2015 Apr 28, 2015 FedDev Ontario + IBM announce new investment to support major expansion of SOSCIP’s activities. May 28, 2015 OCE + SOSCIP launch Smart Computing R&D Challenge, a $7.5 million program with NSERC; 14 projects were approved at up to $500k each. Aug 27, 2015 Seneca College, OCADU and University of Windsor join as academic member institutions. Summer 2015 SOSCIP expands all platforms to double compute capacity. 2016 Feb 24, 2016 Premier Wynne announces $47.5 million IBM Innovation Incubator Project to help high-tech SMEs commercialize. Apr 1, 2016 University of Guelph joins SOSCIP as 15th academic member institution. Sept 2016 With funding from the Province of Ontario, SOSCIP launches TalentEdge Program to fund 37 post-docs on new projects. 2017 May 9, 2017 SOSCIP celebrates 5 years of success at 2017 Conference at MaRS and shares plans for continued growth + expansion. Summer 2017 SOSCIP adds 2 new technology platforms: IBM Watson and a GPU-accelerated platform for applications in cognitive analytics, AI and other science and engineering problems. SOSCIP IMPACT 2017 <15 IBM RESEARCH SPOTLIGHT York researcher transforming video streaming with big data With millions of videos being uploaded daily to video sharing and social media sites, the need for advanced video streaming technology has become essential in sharing information and telling stories. The capability to generate and stream quality video data wirelessly from media devices such as mobile phones, tablets and computers, for example, requires sophisticated data science. That’s where Profs. Aijun An and Amir Asif’s team comes in. Their research team, consisting of Vida Movahedi and Mufleh Al-Shatnawi, is building a scalable 3D cloud video transcoder, a technology that will provide highquality, wireless video transcoding. The project is part of the BRAIN Alliance, a $10.9 million Ontario Research Fund-Research Excellence grant in big data research. Led by York University with OCAD University, Ryerson University and the University of Toronto, as well as 17 private/public sector partners, the initiative was formerly led by researcher Nick Cercone before his untimely passing. In honor of Cercone’s significant contribution to the field, Prof. An continued as the project lead among a team of York researchers to develop big data applications using IBM’s Spectrum Symphony™, an IBM software product used for distributed computing and big data analytics. “The goal of the video cloud transcoding project is to design an error-resilient transcoding framework for mobile 3D video streaming, which transcodes an HD 3D video stream to a mobile, scalable 3D video stream,” explained An. The project “develops a fast, cloud-based solution that can convert high bitrate video data in HD, 4K or 3D representation to a low bit-rate format that is capable of being adjusted to the receiver’s specifications, while preserving the perceived video quality as much as possible,” she explained. Prof. An cites support from SOSCIP as crucial in the cloud computing resources provided to post-doctoral fellows. “At York, I have been fortunate to be able to lead a talented research team. Together we have tackled a variety of research problems in data mining and machine learning, and have established ourselves as a strong research group.” With a patent application underway, the 3D cloud video transcoder may soon offer a new service to the marketplace, providing huge benefits for broadcasting and video streaming companies. > Researcher: Aijun An, York University Industry partner: IBM Canada Ltd. Supported by: SOSCIP, IBM Canada Ltd., OCE, NSERC, Province of Ontario Website: http://brainalliance.ca/ 16> SOSCIP IMPACT 2017 IBM RESEARCH SPOTLIGHT McMaster researcher to “clean” big data In today’s age of information, big data plays a crucial role in decision-making for many organizations, a fact that is likely to increase in the coming years as organizations struggle to remain competitive. Big data lends many insights that give organizations an edge by helping them make informed decisions that improve profit margins and help them better understand customers and employees. Data, however, is often incomplete and rife with errors. That’s where Prof. Fei Chiang from McMaster University comes in. Her research, which includes a team of developers, software architects, students and statisticians from IBM labs in Ottawa, Chicago and Germany, involves improving data quality to achieve trusted and accurate results from data analysis tasks. The project is part of the Smart Computing R&D Challenge, a $7.5 million initiative between OCE, NSERC and SOSCIP (see pg. 18 for details). “Poor data quality costs businesses and organizations millions of dollars a year in operational inefficiencies, poor decision-making and wasted time,” she explained. “Real data often contains missing, duplicate, inconsistent and empty values. The currency and timeliness of data is important because many decisions need to be made with the most recent data.” Prof. Chiang is working with IBM to improve data quality metrics in Watson Analytics, IBM’s cloud-based data analytics platform. The first step is to build a set of detailed quality metrics that provide in-depth information on the data quality problems. The metrics are aggregated to provide customized data quality scores to users based on their data analysis task. The aim is to provide organizations with a means of “cleaning” their data and streamlining that process from months to days. It also provides valuable hands-on training for data scientists to fill a significant gap in the Canadian market. One such student is Yu Huang, a PhD student at McMaster who is the lead developer in designing and testing algorithms. “I’m responsible for developing new data quality metrics that help users better understand and correct data quality problems, and exploring how our techniques can be incorporated with IBM software tools,” he explained. He’s hoping to apply those skills to meet the future needs of the private sector. “I’ve learned how to integrate state-of-the-art research with the needs of industry,” he explained. > Researcher: Fei Chiang, McMaster University Industry partner: IBM Canada Ltd. Supported by: SOSCIP, IBM Canada Ltd., OCE, NSERC SOSCIP IMPACT 2017 <17 OCE-SOSCIP Smart Computing R&D Challenge Approved Smart Computing R&D Challenge Projects Xavier Fernando Fei Chiang Girma Bitsuamlak McMaster University IBM Canada Ltd. A dynamic and scalable data cleaning system for Watson Analytics OCE-SOSCIP partnership combines significant project funding with serious compute power for even greater impact. In May 2015, OCE, SOSCIP and NSERC launched the Smart Computing R&D Challenge, a $7.5-million program supporting collaborative R&D projects between Ontario companies and researchers at SOSCIP academic member institutions. Supported through the OCE Voucher for Industry Association program, this program leverages the NSERC Collaborative R&D grant program so that industry cash contributions to the project are matched 3:1. SOSCIP and OCE hosted two partnering events to help foster new collaborations that were hugely successful, bringing together more than 400 industry and academic researchers. A total of 36 applications were reviewed by the SOSCIP Scientific Advisory Committee and 14 two-year projects valued at up to $500,000 each were approved and are now up and running on the SOSCIP platforms. In addition to enabling the development of new products and services that leverage big data analytics and advanced computing technologies, these projects will support the training and skills development of dozens of graduate students and post-doctoral fellows in data science and give them hands-on industrial experience. 18> SOSCIP IMPACT 2017 Ryerson University PBE Canada Sensing, communications and control infrastructure for safe mining operations Western University Stephenson Engineering, Klimaat Consulting & Innovation, Wausau Tile Inc. Modeling of urban wind flow and its interaction with buildings Shuo Li Western University London X-Ray Associates Big cardiac data Emil Petriu David Maslove Big data analytics for the Maritime Internet of Things (IoT) (FoRCE): Powering clinical trials research through a secure and integrated data University of Ottawa Larus Technologies Queen’s University Indoc Research Amiya Nayak Amer Shalaby Big data analysis and optimization of rural and community broadband wireless networks Joint optimization of route design and schedules for fixed route transit systems University of Ottawa EION Inc. University of Toronto Trapeze Group ULC Featured Project Jianguo Lu Vaughn Betz, University of Toronto University of Windsor Meta Inc. IBM Canada Ltd., Theralase Technologies Inc. Semantic scholar assistant Fast and accurate biophotonic simulations for personalized Photodynamic Cancer Therapy Cristiana Amza Alex Mihailidis Integrated platform for distributed analytics of biometric data Ubiquitous robotics to support older adults with dementia Ue-Li Pen Diana Inkpen Virtualized radio-VLBI digital media NLP for early detection of mental health issues University of Toronto Avertus Inc. University of Toronto Thoth Technology Inc. University of Toronto Crosswing Inc. University of Ottawa VISR Inc. Professor Vaughn Betz and his team, which includes researchers at Princess Margaret Hospital, IBM and Theralase Technologies Inc., a small Toronto-based company that delivers cold laser technologies for health applications, have joined forces to build a very fast and accurate simulator of where light inserted with fiber optic probes travels within a patient’s body. One of the most promising applications of this technology is the delivery of photodynamic therapy (PDT) for cancer treatment. PDT involves the injection of non-toxic drugs, which are harmless until activated by light of a certain wavelength. By shining that wavelength of light directly on a cancerous tumour, the tumour can be destroyed with minimal damage to surrounding healthy tissue and with fewer side effects and less cost than radiation therapy or surgery. The research team is using SOSCIP’s Agile Computing platform to build a simulator of how hundreds of millions of photons of light pass through the human body to help surgeons quickly and accurately determine the most effective placement of light probes to ensure the best possible outcomes for patients. > Researchers: Vaughn Betz, University of Toronto, Dr. Lothar Lilge, Princess Margaret Hospital, University Health Network Industry partners: IBM Canada Ltd., Theralase Technologies Inc. Supported by: SOSCIP, IBM Canada Ltd., OCE, NSERC SOSCIP IMPACT 2017 <19 An associate professor at Western University is setting out to transform how we think about wind. Prof. Girma Bitsuamlak and his research team are working with Canada’s fastest supercomputer, the BGQ, to develop numerical models that simulate the effects of extreme microclimates on cities, particularly wind, to better inform smarter and safer city planning and building design. “Canada is known for its diverse geography and for being exposed to extreme types of climate,” explained Prof. Bitsuamlak, who serves as research director for Western University’s WindEEE Research Institute and a Canada Research Chair in Wind Engineering. By tapping into the high-performance computing resources and expertise offered through SOSCIP, Prof. Bitsuamlak and his team are able to develop a multi-scale climate responsive design framework that considers the complex interaction between buildings and wind. “The simulation of the wind flow field and its interaction with the built environment is complex. This complexity arises from the characteristics of the incoming wind itself such as its speed and turbulence as well as the surrounding conditions (urban topology), and the interaction between wind and the study building.” The research can be used to aid decision-making in construction, one of Canada’s most resource-intensive sectors and contribute to smarter city planning. It can also make pedestrian life safer, reducing wind tunnels created by the proximity of tall buildings. The team includes ten PhD students, two Master’s students and a group of research scientists. “At Western we have the best environment to study the microclimate of cities,” he says, referring to the WindEEE Dome, the world’s first three-dimensional climate testing chamber. PhD student, Kimberley Adamek, is excited to combine her knowledge of architecture with data science. “Data science research helps us understand global-scale concepts that dictate how our world works,” explains Adamek. “By visualizing large scale climate patterns, we can begin to understand our role as designers and the implications of our decisions on the environment.” “SOSCIP has been a blessing to my research by providing the computational resources, particularly the BGQ,” said Prof. Bitsuamlak. “We don’t have to water down the problem, we can tackle complex problems as they exist. When you understand the problem it’s easier to build a solution.” > Researcher: Girma Bitsuamlak, Western University Industry partner: Stephenson Engineering, Klimaat Consulting & Innovation Inc., Wasau Tile Supported by: SOSCIP, IBM Canada Ltd., OCE, NSERC 20> SOSCIP IMPACT 2017 Water tunnel visualization of the wind flow due to buildings at the King and Bay intersection in Toronto. Dye shows wind being redirected (in the wake) behind the Commerce Court Tower. Photo: submitted by Kimberley Adamek and Girma Bitsuamlak Western professor taking wind research to new heights The right treatment at the right time Working in the ICU means Dr. David Maslove often has just minutes to make a decision about the type of treatment his critically ill patients will receive. To do this, many types of clinical data are collected: electrocardiograms, vital signs, lab tests, x-rays and more. Most data are recorded both in paper charts and electronic medical records and some, such as physiologic waveforms, are typically discarded, making it difficult to utilize for clinical trials and research. Dr. Maslove, a clinician scientist with the departments of medicine and critical care medicine at Queen’s University and Intensivist at Kingston General Hospital, is conducting research to better understand the role big data can play in developing tailored treatment for critically ill patients by integrating research with real-time treatment. The inspiration for his SOSCIPsupported research project was born out of frustration. “To stare at the monitors with my patients in the ICU and see all this data streaming by and wondering if there is something I could be learning from it motivated me to see what we could discover by bringing the data together.” With support from the Smart Computing R&D Challenge (pg. 18), > Dr. Maslove gained access to SOSCIP’s Large Memory System to build what he describes as “a living, breathing database of critical illness physiology”. “Bringing all the data together in a unified data structure would allow us to conduct more sophisticated inquiries in the setting of a clinical trial.” Dr. Maslove’s industry partner is Indoc Research, a federally incorporated not-for-profit dedicated to driving scientific innovation and research excellence through the provision of comprehensive bioinformatics and molecular research solutions. By making efficient use of resource allocation, the project will enable seamless and secure integration of research findings into clinical practice, which is especially crucial in an ICU setting. Dr. Maslove’s research could support the development of software that is adopted more broadly to support sharing data knowledge that could simultaneously inform future treatment and research trials. “The key to advancing critical care research is recognizing that all critically ill patients are different. Collecting and analyzing data will allow us to highlight those distinctions and eventually tailor therapies so that each patient gets the right treatment at the right time.” Researcher: David Maslove, Queen’s University Industry partner: Indoc Research Supported by: SOSCIP, IBM Canada Ltd., OCE, NSERC SOSCIP IMPACT 2017 <21 EXPANDING THE ECOSYSTEM Meet SOSCIP’s newest academic member institutions and discover how they plan to access SOSCIP’s resources to make a positive impact. OCAD University: A collaboration in design Paving the way in data visualization and digital media research is OCAD University, North America’s largest design school and the oldest in Canada. At the helm of Canada’s university of imagination is Dr. Sara Diamond, president of OCAD University. Joining the SOSCIP consortium in 2015, OCAD University combines traditional strengths in art and design with a burgeoning collaborative drive in the areas of data visualization and visual representation. OCADU’s strong ties to the community and commitment to innovative research and collaboration make it a natural fit within the SOSCIP ecosystem. In describing the critical role that design technologies play in 21st century life, Dr. Diamond says: “Both digital media and data visualization are incredibly important for communicating and providing information to communities, businesses and individuals, giving them a deeper understanding of their activities.” “OCADU researchers are the catalysts for creating new and inventive technologies that have trans formative impacts on society, particularly for industries such as health, urban planning, energy systems and advanced manufacturing,” says Dr. Diamond. Their track record of innovative collaboration have enabled OCADU researchers to engage in important initiatives such as the Big Data Research, Analytics and Information Network (BRAIN) Alliance, which includes a host of Ontario universities and their industry partners collaborating on research projects that leverage big data to drive innovation. OCADU also collaborates with the University of Toronto, University of Waterloo and IBM on the iCity initiative to develop and apply advanced data analysis and visualization to improve urban transportation systems. “It’s an exciting year ahead for us,” explained Dr. Diamond, who says the university is focused on designing towards the needs of the future. “OCADU will be valuable in providing for the design and data visualization needs of SOSCIP’s partners.” 22> SOSCIP IMPACT 2017 “OCADU researchers are the catalysts for creating new and inventive technologies that have transformative impacts on society.” —Dr. Sara Diamond, President OCAD University EXPANDING THE ECOSYSTEM Seneca College: Creating a skilled future Committed to graduating students who are ready for the jobs of the future, Seneca College has a reputation of providing experiential training and enriched opportunities for its students and faculty to connect and engage with industry. Joining SOSCIP in 2015, Seneca College hopes to enhance data science skills for students through integrated collaborative research projects. “Our students have the skills to meet the demands of today’s job market, and our faculty, by working in collaboration with industry, maintain their currency on industry trends, and are able to bring their learnings back to the classroom to enhance the student learning experience,” said Vanessa Williamson, dean, applied research, Seneca College. Access to SOSCIP’s advanced computing platforms and exposure to working within SOSCIP’s collaborative R&D projects will support the development of skilled graduates who can actively contribute to the increasingly knowledge-based economy. Seneca’s students will build foundational skills and provide expertise to a number of sectors, from health, to advanced manufacturing, cybersecurity and beyond, in areas such as: text mining; use of machine learning techniques; natural language processing applications; social network; and recommendation systems. “Canada will need to graduate more students with experience and hands-on training in storing and analyzing large datasets, running computationally intensive applications and performing other important, highly-skilled tasks,” she explained. “Seneca can support all of these goals.” “Recently, we have been exploring collaborative projects with other SOSCIP member universities and have uncovered many potential synergies where we can leverage the strengths of our undergraduate students with the basic research expertise of a university post-doc. From there, the sky is the limit,” she added. SOSCIP IMPACT 2017 <23 EXPANDING THE ECOSYSTEM University of Guelph: Growing impactful research opportunities Joining SOSCIP as the 15th academic member in 2016, the University of Guelph offers significant research strengths in the areas of food, agricultural science, biodiversity and the environment, veterinary medicine, and “one health” – the continuum between animal, human, and environmental health – among others. “The University of Guelph is one of the leading research universities in the world for the study of food, agricultural science, and veterinary medicine,” explained Malcolm Campbell, vice-president (research), University of Guelph. “Southern Ontario is home to one of the largest agriculture and food sectors in North America – feeding a sizeable domestic population and fuelling a significant export market. By identifying ways to apply smart computing and artificial intelligence to the design and development of novel inventions and methods, we can support this important sector while remaining sustainable, economical, and environmentally-responsible.” Associate professor Alireza Navabi from the University of Guelph has begun work in this field with industry partner, Grain Farmers of Ontario. Prof. Navabi’s SOSCIP collaborative research project is applying smart computing to improve the genetics of winter wheat crops in Ontario that are threatened by a devastating fungal disease known as Fusarium head blight (FHB). “We also see opportunities to work with SOSCIP and its partners to apply smart computing in the areas of biodiversity and the environment,” explained Prof. Campbell. The university is home to the Biodiversity Institute of Ontario, which is committed to research and developing applications for sustaining natural systems. The Institute is the birthplace of DNA barcoding, which looks to create a DNA repository of every living organism on the planet. “This is a tremendous initiative for the protection and survival of living organisms in an uncertain world,” said Prof. Campbell. “We look forward to working with the resources provided by SOSCIP and building rich partnerships that will enhance the university’s strong research profile in these areas.” 24> SOSCIP IMPACT 2017 SOSCIP’s Computing Platforms: the right tools for the job > The SOSCIP advanced computing platforms feature six distinct and unique systems that provide academic and industry researchers with a competitive advantage not available anywhere else in Canada. Our technology is bolstered by high-level technical support from our experts at the University of Toronto, Western University, Queen’s University and IBM Canada Ltd. IBM Blue Gene/Q Canada’s fastest supercomputer is suited for large-scale distributed applications that require massively parallel processing power, such as molecular modelling, drug discovery, climate change forecasting and computational fluid dynamics. Cloud Analytics Canada’s first research-dedicated cloud environment hosts a broad array of IBM software tools for application development and data analytics. The Cloud is ideal for complex data analysis, streaming and managing large data volumes and data mining applications. Agile Computing Canada’s first multi-platform agile R&D environment uses Field-Programmable Gate Array (FPGA) technology to accelerate hardware performance. FPGA cards can accomplish numerically complex tasks more efficiently and at a lower cost than a traditional CPU could do alone. High-Security Large Memory System The LMS platform is a single 64-core virtual system with 4.5 TB of RAM. Outfitted with the latest IBM analytics software, the LMS is ideal for data-intensive projects with huge active memory requirements. IBM Watson The SOSCIP Watson Platform provides a window into the IBM cognitive API’s and hosted services managed and maintained at the Queen’s University Centre for Advanced Computing (CAC). This system provides extended Platform-as-a-Service (PaaS) access to the IBM Watson tools. The Watson API’s are continuously evolving to provide cognitive solutions to such challenges as: natural language recognition, tone analysis, visual recognition, IoT, conversations. The current list of available API’s is accessible through https://www.ibm.com/ cloud-computing/bluemix/watson. GPU-Accelerated Platform In the summer of 2017, SOSCIP will install its latest technology, a GPU-accelerated platform, for artificial intelligence applications, including machine learning and deep learning, as well as diverse engineering and scientific applications including materials science, astronomy and geophysics. Please contact us for further information on this platform. Visit www.soscip.org/platforms for more information. SOSCIP IMPACT 2017 <25 THE FUTURE OF SOSCIP 26> SOSCIP IMPACT 2017 Over the next five years, SOSCIP will focus on building strategic partnerships to grow our collaborative research platform and deliver even greater impact for Ontario and Canada. We will expand our membership to include more academic institutions across the province of Ontario. We will develop strategic partnerships with more large Canadian companies that share our vision of the powerful social and economic impacts that advanced computing technologies and collaborative R&D can enable. We will work with our partners and stakeholders to continue to offer leading edge advanced computing technologies and expertise to drive innovation. We will continue to be a comprehensive and significant training ground for the next generation of data scientists to develop skills that will be critical to the success of their own future careers and our economy. > With ongoing support from our partners and stakeholders, SOSCIP will look forward to continuing to provide a unique collaboration platform, where government, academic and small, medium and large industry partners come together to support the development of new ideas that have the potential to bring significant health, environmental, technological and economic advances for the benefit of Ontario, Canada and the world. To learn more about how to get involved, please write to our Executive Director, Dr. Elissa Strome, at [email protected]. SOSCIP IMPACT 2017 <27 INNOVATION Partners Members Sponsors compute calcul ONTARIO 28> SOSCIP IMPACT 2017 REALIZED Editor: Krista Davidson Publisher: Elissa Strome Concept and design: Hambly & Woolley Inc. Videos: HogTown Films Printing: The Printing House Ltd. Special thanks to: All the researchers, trainees and industry partners featured in the report and Compute Ontario for their support in developing the Impact Report. This project is funded by the Goverment of Canada through the Federal Economic Development Agency for Southern Ontario. > SOSCIP Consortium MaRS West Tower, 661 University Avenue Suite 1140, Toronto, ON M5G 1M1 416.978.7023 [email protected] www.soscip.org