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Core Principles Contents Biological Molecules Cells Cell transport Organisms exchange materials with their environment Enzymes Digestion Biological Molecules Life on Earth relies on water. At least 80% organism mass is water. Other chemicals needed are split into 4 groups: - proteins - nucleic acids 93% of dry mass of living organisms (remaining 7% from vitamins) - carbohydrates - lipids Group name monomers polymers % dry mass Proteins amino acids polypeptides 50 nucleic acids nucleotides polynucleotides 18 carbohydrates monosaccharides polysaccharides 15 Group name lipids components largest unit fatty acids + glycerol Triglycerides % dry mass 10 Cells Biggest division between cells: - prokaryote (no nucleus) - eukaryote (nucleus) Common features: Prokaryotic Cells Mesosome Capsule Cell wall Plasma membrane Nucleoid – plasma membrane infolding to aid compartmentalisation – sticky outer protective layer – rigid structure to help maintain shape – separates cell from environment – where DNA is found Eukaryotic Cells: Plants Specific to plant cells: - Vacuole - Chloroplast - Plasmodesma - Cell wall Eukaryotic Cells: Animals Specific to animal cells: - Centriole Similarities & Differences Prokaryotic Cells Eukaryotic cells small cells (< 5 mm) larger cells (> 10 mm) always unicellular often multicellular no nucleus or any membrane-bound organelles, such as mitochondria always have nucleus and other membrane-bound organelles DNA is circular, without proteins DNA is linear and associated with proteins to form chromatin ribosomes are small (70S) ribosomes are large (80S) no cytoskeleton always has a cytoskeleton motility by rigid rotating flagellum made of flagellin motility by flexible waving undulipodium, made of tubulin cell division is by binary fission cell division is by mitosis or meiosis reproduction is always asexual reproduction is asexual or sexual huge variety of metabolic pathways common metabolic pathways Cell Membrane The most important organelle in an organism’s cell Controls how substances move in and out of the cell 5 methods for movement in and out of cell: 1) 2) 3) 4) 5) lipid diffusion osmosis passive transport active transport vesicles Lipid Diffusion Carried out by very small molecules – H2O, O2, CO2 No energy is involved Substances move down concentration gradient Cannot be controlled by cell Lipid bilayer Osmosis Diffusion of water (abundant in cells) across a membrane Higher concentration of solution = less water molecules Net flow of water diffuses down concentration gradient Water moves from dilute to concentrated solution Solution Types lower concentration than cell equal concentration to cell higher concentration than cell Passive Transport Transport of substances across a membrane by a transmembrane protein molecule Transport proteins are often specific to one molecule No energy is involved Substances move down concentration gradient Passive Transport Channel proteins: - form channel in membrane which is filled with water - ions diffuse across the membrane - many channels can be opened or closed Carrier proteins: - flip around so that only one side of membrane is open - high concentration: substance binds - low concentration: substance is released Active Transport Protein pump molecule “pumps” substances across membrane Molecule of substance binds to protein and is then released on opposite face Each molecule fits a particular protein pump Energy is required; substances move up concentration gradient Vesicles Move large molecules in and out of cells e.g. proteins, polysaccharides, nucleotides In to cell: endocytosis Out of cell: exocytosis Cell Transport Summary Method Energy Required? Molecules Concentration Gradient Lipid Diffusion No Very small Down Osmosis No Water Down Passive Transport No Small Down Active Transport Yes Small Up Vesicles Yes Large Down Diffusion Organisms exchange materials with their environment: - food - waste diffuse between organism and environment - gases - heat Rate of Diffusion surface area x concentration difference distance surface area : volume ratio (volume increases much more than surface area, so as organisms get bigger it becomes harder to exchange) Gas Exchange Takes place at a respiratory surface This surface must have: - large surface area - thin permeable surface - moist exchange surface Next slide shows requirements for plants, fish and humans Gas Exchange in Plants Gases enter leaf through stomata under leaf Guard cells enclose stomata and swell to reduce water loss Gases diffuse through and into mesophyll cells Diffusion rate increases during day due to photosynthesis: - oxygen concentration increases - carbon dioxide concentration decreases - relative concentration gradients increase… diffusion rate increases Palisade mesophyll cells are packed with chloroplasts Palisade cells packed together for maximum absorption Gas Exchange in Fish The water surrounding a fish contains a small percentage of dissolved oxygen. The fish uses a special gas exchange organ (gills). It has a large surface area and a short distance for gas exchange to the blood capillaries. Water flows over the filaments, and oxygen can diffuse down its concentration gradient the short distance between water and blood. Carbon dioxide diffuses the opposite way down its concentration gradient Approximately 80% of the dissolved oxygen in water is extracted by the gills Gas Exchange in Humans - Humans have approximately 600 million alveoli - walls are two cells thick (easy for oxygen and carbon dioxide to diffuse) - constantly moistened by water - contain phagocyte cells to kill bacteria Inhalation and Exhalation Diaphragm contracts, pressure decreases. Air rushes into lungs Diaphragm relaxes, pressure increases. Air rushes out of lungs Enzymes Enzymes are… - biological catalysts - proteins - suited to one specific reaction only - affected by PH - affected by temperature - affected by lack of metal ions (often found in vitamins) - able to lower the activation energy barrier of a reaction Each active site has a particular shape Each substrate is designed for an enzyme They fit together like jigsaw pieces Factors Affecting Enzymes Digestion Digestion consists of: - Ingestion (taking large pieces of food into the body) - Digestion (breaking down of food) - Absorption (movement of soluble products into cells) - Assimilation (using absorbed materials) - Egestion (getting rid of undigested material from a cavity) There are several parts to the digestive system: Digestion 1) Mouth Teeth and tongue break up food form a bolus Saliva dissolves soluble substances Mucus lubricates Lysozymes kill bacteria Amylase digests starch Bolus is swallowed down pharynx Food does not enter lungs as epiglottis closes off trachea Digestion 2) Oesophagus Tube that connects mouth to gut Can be closed (it is soft) Bolus is forced by ‘peristalsis’ by circular contraction of thick muscles 3) Stomach Food is stored here for a few hours Muscle churns food, which is released into the s.intestine by the sphincter Gastric juice (pH1) secretes mucus, pepsin and rennin Digestion 4) Small Intestine contains: - Duodenum (30cm): most digestion occurs here by pancreatic juice which contains many enzymes. Bile is released into here to aid digestion (bile salts) and neutralise stomach acid (sodium hydrogen carbonate) for efficient pancreatic enzymes - Jejunum (2m) and ileum (4m): internal surface area is huge and contains folds that comprise villi and microvilli. Villi contain many cells, whilst microvilli are small subcellular structures. Food is forced by peristalsis Digestion 5) Large Intestine contains: - Food can remain here for 36 hours - Many glands secrete mucus - Produces faeces (cellulose, cholesterol, bile, mucus, mucosa cells, bacteria and water) - Sphincter is an involuntary muscle that we learn to control Summary Biological molecules: proteins, carbohydrates, nucleic acid, lipids Cells: prokaryotic and eukaryotic Cell transport: Lipid diffusion, passive & active transport, osmosis and vesicles Organisms exchange materials with their environment and this becomes harder as the size of the organism increases Enzymes are vital for life and are easily affected if their conditions are changed Digestion occurs in the mouth, oesophagus, stomach, small intestine and large intestine