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1. Fukasawa, H. and Uchiyama, T. 1977. The selective extraction of RNA polymerase I (A) from cauliflower inflorescence. Plant Cell Physiology 18:1159-1162. 2. Takeda, K., Uchiyama, T., and Yamanouchi, K. 1979. Large-scale purification of measles virus hemagglutinin in soluble form. Annual Report of the Institute for Virus Research, Kyoto University 22:48-52. 3. Uchiyama, T., Takeda, K., Yonezawa, T., and Matsumoto, S. 1979. Replication of measles virus in long term infection in organized cultures of hamster dorsal root ganglion. Annual Report of the Institute for Virus Research, Kyoto University 22:52-54. 4. Uchiyama, T., Takeda, K., Sato, T. A., and Yamanouchi, K. 1980. Comparative studies on the distribution of HA and M antigens in measles and SSPE virus-infected cells. Annual Report of the Institute for Virus Research, Kyoto University 23:1-7. 5. Uchiyama, T., Takeda, K., and Yamanouchi, K. 1985. Replication of measles virus and localization of the viral antigens in long-term infection in organotypic cultures of hamster dorsal-root ganglion. Japanese Journal of Experimental Medicine 55:109-121. 6. Yamamoto, S., Kawabata, N., Uchiyama, T., and Uchida, T. 1987. Evidence for infection caused by spotted fever group rickettsia in Kyushu, Japan. Japanese Journal of Medical Science and Biology 40:75-78. 7. Kaiho, I., Tokieda, M., Ohtawara, M., Uchiyama, T., and Uchida, T. 1988. Occurrence of rickettsiosis of spotted fever group in Chiba Prefecture of Japan. Japanese Journal of Medical Science and Biology 41:69-71. 8. Uchida, T., Uchiyama, T., and Koyama, A.H. 1988. Isolation of spotted fever group rickettsiae from humans in Japan. Journal of Infectious Diseases 158:664-665. 9. Uchiyama, T. and Uchida, T. 1988. Ultrastructural study on Japanese isolates of spotted fever group rickettsiae. Microbiology and Immunology 32:1163-1166. 10. Uchiyama, T. and Uchida, T. 1989. Comparison of antigenic reactivity between intracellular and extracellular rickettsiae of spotted fever group. Tokushima Journal of Experimental Medicine 36:25-27. 11. Uchida, T., YU, X.J., Uchiyama, T., and Walker, D.H. 1989. Identification of a unique spotted fever group rickettsia from humans in Japan. Journal of Infect Diseases 159:1122-1126. 12. Uchiyama, T., Uchida, T., and Walker, D.H. 1990. Species-specific monoclonal antibodies to Rickettsia japonica, a newly identified spotted fever group rickettsia. Journal of Clinical Microbiology 28:1177-1180. 13. Uchida, T., Uchiyama, T., Koyama, A.H., Yu, X.J., Walker, D.H., Funato, T., and Kitamura, Y. 1991. Isolation and identification of Rickettsia japonica, causative agent of spotted fever group rickettsial infections in Japan. In Kazar, J. and Raoult, D. eds. Rickettsiae and rickettsial diseases. Bratislava Czechoslovakia, Publishing House of the Slovak Academy of Sciences, 389-395. 14. Uchiyama, T., Uchida, T., and Walker, D.H. 1991. Analysis of antigens of Rickettsia japonica with species-specific monoclonal antibodies. In Kazar, J. and Raoult, D. eds. Rickettsiae and rickettsial diseases. Bratislava Czechoslovakia, Publishing House of the Slovak Academy of Sciences, 396-400. 15. Uchida, T., Uchiyama, T., Kumano, K., and Walker, D.H. 1992. Rickettsia japonica sp. nov., the etiological agent of spotted fever group rickettsiosis in Japan. International Journal of Systematic Bacteriology 42:303-305. 16. Yan, Y., Uchiyama, T., and Uchida, T. 1993. Differentiation of Rickettsia japonica by restriction endonuclease fragment length polymorphism using products of polymerase chain reaction amplification with Rickettsia rickettsii 190-kilodalton surface antigen primers. Microbiology and Immunology 37:441-445. 17. Uchiyama, T., Uchida, T., and Walker, D.H. 1994. Analysis of major surface polypeptides of Rickettsia japonica. Microbiology and Immunology 38:575-579. 18. Uchiyama, T., Uchida, T., Wen, J.W., and Walker, D.H. 1994. Demonstration of heat-labile and heat-stable epitopes of Rickettsia japonica on ultrathin sections. Laboratory Investigation 71:432-437. 19. Yan, Y., Uchiyama, T., and Uchida, T. 1994. Nucleotide sequence of polymerase chain reaction product amplified from Rickettsia japonica DNA using Rickettsia rickettsii 190-kilodalton surface antigen gene primers. Microbiology and Immunology 38:865-869. 20. Uchiyama, T., Zhao, L., Yan, Y., and Uchida, T. 1995. Cross-reactivity of Rickettsia japonica and Rickettsia typhi demonstrated by immunofluorescence and Western immunoblotting. Microbiology and Immunology 39:951-957. 21. Uchiyama, T., Zhao, L., and Uchida, T. 1996. Demonstration of a heat-stable 120-kilodalton protein of Rickettsia japonica as a spotted fever group-common antigen. Microbiology and Immunology 40:133-139. 22. Uchiyama, T. 1997. Intracytoplasmic localization of antigenic heat-stable 120- to 130-kilodalton proteins (PS120) common to spotted fever group rickettsiae demonstrated by immunoelectron microscopy. Microbiology and Immunology 41:815-818. 23. Uchiyama, T. 1999. Phenotypic and genotypic homogeneity of the strains of Rickettsia japonica isolated from patients with Oriental spotted fever. Microbiology and Immunology 43:717-721. 24. Akari, H., Uchiyama, T., Fukumori, T., Iida, S., Koyama, A. H., and Adachi, A. 1999. Pseudotyping HIV-1 by vesicular stomatitis virus G protein does not reduce the cell-dependent requirement of Vif for optimal infectivity: functional difference between Vif and Nef. Journal of General Virology 80:2945-2949. 25. Uchiyama, T. 1999. Sequence analysis of the gene encoding a spotted fever group-specific intracytoplasmic protein PS120 of Rickettsia japonica. Microbiology and Immunology 43:983-987. 26. Sakaguchi, T., Uchiyama, T., Fujii, Y., Kiyotani, K., Kato, A., Nagai, Y., Kawai, A., and Yoshida, T. 1999. Double layered membrane vesicles released from mammalian cells infected with Sendai virus expressing the matrix protein of vesicular stomatitis virus. Virology 263:230-243. 27. Uchiyama, T. 1999. Sequence analysis of the gene encoding the major outer membrane protein rOmp B of Rickettsia japonica. Microbiology and Immunology 43:1061-1065. 28. Uchiyama, T. 1999. Role of major surface antigens of Rickettsia japonica in the attachment to host cells. In Raoult, D. and Brouqui, P. eds. Rickettsiae and rickettsial diseases at the turn of the third millennium. Paris France, Elsevier, 182-188. 29. Sakaguchi, T., Uchiyama, T., Huang, C., Fukuhara, N., Kiyotani, K., Nagai, Y., and Yoshida, T. 2002. Alteration of Sendai virus morphogenesis and nucleocapsid incorporation due to mutation of cystein residues of the matrix protein. Journal of Virology 76:1682-1690. 30. Uchiyama, T. 2003. Adherence to and invasion of Vero cells by recombinant Escherichia coli expressing the outer membrane protein rOmpB of Rickettsia japonica. Annals of the New York Academy of Sciences 990:585-590. 31. Ameyama, S., Toriumi, H., Takahashi, T., Shimura, Y., Nakahara, T., Honda, Y., Mifune, K., Uchiyama, T., and Kawai, A. 2003. Monoclonal antibody #3-9-16 recognizes one of the two isoforms of rabies virus matrix protein that exposes its N-terminus on the virion surface. Microbiology and Immunology 47:639-651. 32. Shoji, J., Tanihara, Y., Uchiyama, T., and Kawai, A. 2004. Preparation of virosomes coated with the vesicular stomatitis virus glycoprotein as efficient gene transfer vehicles for animal cells. Microbiology and Immunology 48:163-174. 33. Sakaguchi, S., Sato, I., Muguruma, H., Kawano, H., Kusuhara, Y., Yano, S., Sone, S., and Uchiyama, T. 2004. Reemerging murine typhus, Japan. Emerging Infectious Diseases 10:964-965. 34. Sugahara, F., Uchiyama, T., Watanabe, H., Shimazu, Y., Kuwayama, M., Fujii, Y., Kiyotani, K., Adachi, A., Kohno, N., Yoshida, T., and Sakaguchi, T. 2004. Paramyxovirus Sendai virus-like particle formation by expression of multiple viral proteins and acceleration of its release by C protein. Virology 325:1-10. 35. Nagao, T., Yoshida, A., Sakurai, A., Piroozmand, A., Jere, A., Fujita, M., Uchiyama, T., and Adachi, A. 2004. Determination of HIV-1 infectivity by lymphocytic cell lines with integrated luciferase gene. International Journal of Molecular Medicine 14:1073-1076. 36. Wang, H., Sakurai, A., Khamsri, B., Uchiyama, T., Gu, H., Adachi, A., and Fujita, M. 2005. Unique characteristics of HIV-1 Vif expression. Microbes and Infection 7:385-390. 37. Yoshida, A., Piroozmand, A., Sakurai, A., Fujita, M., Uchiyama, T., Kimura, T., Hayashi, Y., Kiso, Y., and Adachi, A. 2005. Establishment of a biological assay system for human retroviral protease activity. Microbes and Infection 7:820-824. 38. Uchiyama, T. 2005. Growth of typhus group and spotted fever group rickettsiae in insect cells. Annals of the New York Academy of Sciences 1063:215-221. 39. Khamsri, B., Murao, F., Yoshida, A., Sakurai, A., Uchiyama, T., Shirai, H., Matsuo, Y., Fujita, M., and Adachi, A. 2006. Comparative study on the structure and cytopathogenic activity of HIV Vpr/Vpx proteins. Microbes and Infection 8:10-15. 40. Uchiyama, T., Kawano, H., and Kusuhara, Y. 2006. The major outer membrane protein rOmpB of spotted fever group rickettsiae functions in the rickettsial adherence to and invasion of Vero cells. Microbes and Infection 8:801-809. 41. Kamada, K., Yoshida, A., Khamsri, B., Piroozmand, A., Yamashita, T., Uchiyama, T., Fujita, M., and Adachi, A. 2006. Construction of gag-chimeric viruses between HIV-1 and SIVmac that are capable of productive multi-cycle infection. Microbes and Infection 8:1075-1081. 42. Piroozmand, A., Boonruang, K., Fujita, M., Adachi, A., and Uchiyama, T. 2006. Morphological study on biologically distinct vpx/vpr mutants of HIV-2. Journal of Medical Investigation 53:271-276. 43. Azuma, M., Nishioka, Y., Ogawa, M., Takasaki, T., Sone, S., and Uchiyama, T. 2006. Murine typhus from Vietnam, imported into Japan. Emerging Infectious Diseases 12:1466-1468. 44. Khamsri, B., Fujita, M., Kamada, K., Piroozmand, A., Yamashita, T., Uchiyama, T., and Adachi, A. 2006. Effects of lysine to arginine mutations in HIV-1 Vif on its expression and viral infectivity. International Journal of Molecular Medicine 18:679-683. 45. Uchiyama, T. 2006. Morphological study on the group-specific inhibition of rickettsial growth in insect cells. p.408. In Ichinose, H. and Sasaki, T. Eds., Proceedings of the 16th International Microscopy Congress. Vol.1. Biological and medical science. B-20. Bacteriology and virology. Publication committee of IMC16. Sapporo. 46. Kamada, K., Igarashi, T., Martin, M.A., Khamsri, B., Hatcho, K., Yamashita, T., Fujita, M., Uchiyama, T., and Adachi, A. 2006. Generation of HIV-1 derivatives that productively infect macaque monkey lymphoid cells. Proceedings of the National Academy of Sciences, USA 103:16959-16964. 47. Kitada, S., Uchiyama, T., Funatsu, T., Kitada, Y., Ogishima, T., and Ito, A. 2007. A protein from a parasitic microorganism Rickettsiae prowazekii, can cleave the signal sequences of proteins targeting mitochondria. Journal of Bacteriology 189: 844-850. 48. Piroozmand, A., Yamamoto, Y., Khamsri, B., Fujita, M., Uchiyama, T., and Adachi, A. 2007. Generation and characterization of APOBEC3G-positive 293T cells for HIV-1 Vif study. Journal of Medical Investigation 54:154-158. 49. Chan, Y.G.Y., Cardwell, M.M., Hermanas, T.M., Uchiyama, T., and Martinez, J.J. 2009. Rickettsial outer-membrane protein B (rOmpB) mediates bacterial invasion through Ku70 in an actin, c-Cbl, clathrin and caveolin 2-dependent manner. Cellular Microbiology 11:629-644. 50. Ogawa, M., Shinkai-Ouchi, F., Uchiyama, T., Hagiwara, K., Hanada, K., Kurane, I, and Kishimoto, T. 2009. Shotgun proteomics of Orientia tsutsugamushi. Clinical Microbiology and Infection 15:239-240. 51. Uchiyama, T., Ogawa, M., Kishi, M., Yamashita, T., Kishimoto, T., and Kurane, I. 2009. Restriction of the growth of typhus group rickettsiae in tick cells. Clinical Microbiology and Infection 15:332-333. 52. Yamashita, T., Nomaguchi, M., Miyake, A., Uchiyama, T., and Adachi, A. 2010. Status of APOBEC3G/F in cells and progeny virions modulated by Vif determines HIV-1 infectivity, Microbes and Infection 12:166-171. 53. Nagao, T., Yamashita, T., Miyake, A., Uchiyama, T., Nomaguchi, M., and Adachi, A. 2010. Different interaction between HIV-1 Vif and its cellular target proteins APOBEC3G/APOBEC3F. Journal of Medical Investigation 57: 89-94. 54. Uchiyama, T., Kishi, M., and Ogawa, M. 2012. Restriction of the growth of a nonpathogenic spotted fever group rickettsia. FEMS Immunology and Medical Microbiology 64: 42-47. 55. Uchiyama, T. 2012. Tropism and pathogenicity of rickettsiae. Frontiers in doi:10.3389/fmicb.2012.00230. Microbiology 3:230. 56. Ogawa, M., Uchiyama, T., Sato, M., and Ando, S. 2013. Decontamination of mycoplasma-contaminated Orientia tsutsugamushi strains by repeating passages though cell cultures with antibiotics. BMC Microbiology 13: 32.