Survey
* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project
* Your assessment is very important for improving the workof artificial intelligence, which forms the content of this project
Appendix 1: Attribute summary of papers reviewed. a Study Species Adriaensen et al. 2003 Generic species based on small forest mammals Biological Data b Expert Opinion Bartelt et al. 2010 Anaxyrus (=Bufo) boreas) Expert Opinion; Detection Bauer et al. 2010 Ambystomatidae Expert Opinion (Expert opinion process developed in Compton et al. 2007) Beazley et al. 2005 Alces alces Americana; Martes americana (sep) Expert Opinion; Detection Beier et al. 2009 Puma concolor; Ococoileus hemionus; Taxidea taxus; Vulpes macrotis mutica; Sciurus griseus; Dipodomys Expert Opinion nitratiodes nitratoides; Perognathus alticola inexpectatus; Strix occidentalis occidentalis (sep) Resource Analytical Selection Process c Function d One stage EO None Two Stage EGE MSF One stage EO None One Stage EO Two Stage EG E One stage EO Environmental Data e Parametersf Typeg Grain LU/LC 1m Cat Extent i ~4km2 LU/LC; % Canopy; DEM; Temp; Vapor Cat & Cont 30m 8 km2 LU/LC Cat NP ~100 km2 LU/LC; Roads Cat 2km and 10km 48,800 km2 LU/LC; DEM; Roads; Topographic Position Cat 100m 6,650 km2 None PSF None h Analytical Process Resistance Value Range j None 0 - 200 Used Niche Mapper to develop Evaporative Water Loss RSurface as well as HSI RSurface for each individual.Model selection was based on toad movement. Used resistance values from Compton et al. 2007 except for one development class where authors assigned resistance values. Used literature to develop HSIs. For moose used presence data in a logistic regression to identify HSI that best predicted presence. Resistance values were the inverse of HSI values. Weighted layers from 0 – 100% 19 – 87 (cost surface 1); NP (cost surface2) 0-1 0-1 0-10 Study Braunisch et al. 2010 Species a Biological Data b Resource Analytical Selection Process c Function d Tetrao urogallus Genetic Dist (Ind) One stage E Broquet et al. 2006 Martes americana Expert OpinionGenetic Dist (Ind) Two Stage EG E MSF Bunn et al. 2000 Mustela vison; Protonotaria citrea (comb) Expert Opinion One Stage EO None MSF Chardon et al. 2003 Pararge aegeria L. Expert Opinion Detection Two Stage EG E MSF Chetkiewicz & Boyce 2009 Ursus arctos; Puma concolor (sep) Detection (Telem) One Stage E PSF Clark et al. 2008 Crotalus horridus Expert Opinion Validated with Genetic data (Individ) One Stage EO* None Compton et al. 2007 Ambystoma opacum Expert Opinion One Stage EO None Environmental Data e Parametersf Typeg LU/LC; Roads; Settlements; Topographic Exposure h Grain Extent i Cat 120m 510 km2 LU/LC Cat 10m; 25m; 50m; 75m; 100m; 500m 500 km2; 800 km2 LU/LC; Hydro; Roads Cat 90m 5,800 km2 LU/LC Cat 1m ~ 14km2; ~ 23 km2 LU/LC; hydro; slope; DEM; TRI; NDVI; CTI; Roads Cat & Cont 30m 425 km2; 1,657 km2 Slope; Aspect Cat 10m ~240km2 LU/LC; Roads; Hydro; Slope Cat 30m 27,336 km2 Analytical Process Proportion of environmental variable within a 6 pixel strip between individuals was correlated to genetic distances using Mantel tests. Permeability value for a pixel was calculated by summing the significant regression coefficients for each environmental variable. Expert opinion was used to develop a priori resistance surfaces. LCP lengths between pairs of individuals were correlated with genetic distances using Mantel tests. None Used Expert Opinion to estimate a range of resistance values for each class. Used presence – absence data and a logistic regression framework to determine which resistance surface had better predictive power. Seasonal RSF. Took inverse of RSF values to obtain resistance values Expert opinion was used to develop an a priori resistance surface. LCP lengths between pairs of individuals were tested for correlation with genetic distances using a non-parametric permutation test. Used trimmed average of expert opinion to derive final resistance values. Resistance Value Range j -0.220 – 0.078 (permeability values) 1 - 50 0.5 - 5 1 -100 1 – 4; 1 – 5; 1 – 6; 1 – 7; 1 - 9 NP 1 - 40 Study Species a Biological Data b Resource Analytical Selection Process c Function d Coulon et al. 2004 Capreolus capreolus Expert Opinion Validated with Genetic data (Individ) One Stage EO* None Cushman & Lewis 2010 Ursus americanus Expert Opinion Pathway Two Stage EG E PathSF Cushman et al. 2006 Ursus americanus Expert Opinion Genetic Dist (Ind) Two Stage EG E MSF Cushman et al. 2009 Ursus americanus Expert Opinion Genetic Dist (Ind) (from Cushman et al. 2006) Two Stage EG E Dedecker et al. 2007 Insecta, Ephemeroptera; Insecta, Trichoptera (sep) Expert Opinion One Stage EO Environmental Data e Parametersf Typeg h Grain Extent i Analytical Process Used FNM to quantify the extent of wooded habitat (distance to and size of nearest patch) around a pixel with an 800m moving window. The lower the value the more wooded habitat. LCP lengths between pairs of individuals were correlated with genetic distances using Mantel tests. Expert opinion was used to develop an a priori resistance surfaces. Path Selection Function was used to identify the most supported resistance surface. (Used path compared with available paths. Conditional logistic regression was used to identify the most supported resistance surface.) Expert opinion was used to develop a priori resistance surfaces. LCP costs between pairs of individuals were correlated with genetic distances using Mantel tests within a causal modeling framework. Resistance Value Range j LU/LC Cat 20m 2,200 km2 Roads; % Canopy; DEM; Hum Dev Cat & Cont 90m 1,500 km2 LU/LC; Roads; Slope; DEM Cat & Cont 90m 3,000 km2 MSF LU/LC; Roads; DEM Cat & Cont 90m ~ 300,000 km2 Same analytical process as Cushman et al. 2006 (see above) 1 – 63 None LU/LC; Hydro; Culvert; Weir Cat NP 116.5 km2 None 1 - 200 0 - 200 NP 1 - 63 Study Desrochers et al. 2011 Driezen et al. 2007 Emaresi et al. 2011 Species a Seiurus aurocapilla Biological Data b Expert Opinion Relocation (homing rates) Resource Analytical Selection Process c Function d Two Stage EG E Erinaceus europaeus Expert Opinion Detection along path Two Stage EG E Mesotriton alpestris Genetic Dist (Pop) One Stage E MSF Environmental Data e Parametersf Typeg LU/LC Cat h Grain 25m Extent i 4,000 km2 PSF LU/LC; Roads; Hydro Cat 10m 5 study sites from 11.09 km2 to 20.59 km2 MSF LU/LC; Roads; Hydro Cat 10m 672 km2 Analytical Process Expert opinion was used to develop a priori resistance surfaces. Homing rates were used in Cox regression models to identify most supported resistance surface. Expert opinion and frequency of telemetry points in habitat types were used to develop a priori resistance surfaces. Compared used points along movement path with available points at same Euclidean distance from source cell. The relative cost at each fix location was obtained using a z-score. Proportion of environmental variable within rectangular strips of different widths between populations was used as a representation of landscape feature frequencies. These frequencies were ranked using AIC and the regression coefficient and Mantel tests were used determine if a landscape feature limits or favors movement. Resistance Value Range j 1 - 30 1 - 150 NP a Biological Data b Resource Analytical Selection Process c Function d Study Species Epps et al. 2011 Loxodonta africana; Giraffa camelopardalis; Tragelaphus strepsiceros; Aepyceros melampus; Panthera leo; Crocuta crocuta; Proteles cristata; Orycteropus afer (sep) Detection None NA Epps et al. 2007 Ovis canadensis Expert Opinion Genetic Dist (Pop) Two stage EG E MSF Estrada-Pena 2003 Ixodes ricinus Expert Opinion One Stage EO None Fall et al. 2007 Rangifer tarandus caribou Expert Opinion; Detection(telem) (from O’Brien et al. 2006) One Stage E EO PSF None Ferreras 2001 Lynx pardinus Detection (telem) One Stage E PSF Environmental Data e Parametersf Typeg h Grain Extent i Distance Grid (minimum distance of each pixel to nearest detection location) Cont 1km 15,400 km2 Slope Cat 90m 75,000 km2 DEM Cont 10m 1,380 km2 LU/LC; Roads Cat 100m 160,000 km2 LU/LC Cat 50m 2,500 km2 Analytical Process Using only species with detection probabilities of >0.65, calculated the resistance value for each cell as the minimum distance of each pixel to the nearest detection location. Expert opinion was used to develop a priori resistance surfaces with different slopes representing cutoffs. Log transformed LC distances between population pairs were correlated with genetic distances using Mantel tests. Assumed linear relationship between elevation and resistance to movement. Applied time weights to cost surface with farther rings denoting increasing weights. (To emulate feeding time on host) Used previously developed resistance surface derived from RSF (O’Brien et al. 2006, see below). Used Expert Opinion to apply resistance values for linear features. Analyzed data within Jacob’s Selection Index to obtain values ranging from -1 (maximum avoidance) to +1 (maximum preference. Rescaled from 1-10 and used the inverse of the preference values for the resistance value. Resistance Value Range j NP 0.01 - 1 NP 1-5 1 – 10 Study Species a Biological Data b Resource Analytical Selection Process c Function d Flamm et al. 2005 Trichechus manatus latirostris Detection (Telem) (from Weigle et al. 2001) One Stage E PSF Flesch et al. 2010 Ovis canadensis mexicana Expert Opinion Genetic Dist (Pop) (from Epps et al. 2007) Two Stage EG E MSF Foltete et al. 2008 Arvicola terrestris Expert Opinion Detection Two Stage EG E MSF Freeman & Bell 2011 Rana sylvatica Expert Opinion One Stage EO None Environmental Data e Parametersf Typeg Grainh Extenti Bathymetry Cat 25m ~800 km2 Slope Cat NP ~19,600 km2 LU/LC Cont 7m 200 km2 LU/LC; Roads Cat 5m ~76.7 km2 Analytical Process Used previously developed resistance surface (Weigle et al. 2001) which was based on deviation from random distribution analysis. When observed percentage exceeded expected, preference was suggested and that class was assigned a positive sign. Scaled results by subtracting from largest quotient. Used previously developed resistance surface from Epps et al. 2007. See above. Developed a priori resistance surfaces based on different topological functional forms of distance from habitat/non-habitat edge. Used a Pearson correlation coefficient to compare least cost path distances and least cost path lengths with distribution of vole densities. Several iterative rounds of input and feedback from experts. Resistance Value Range j 10-65 0.01 – 1.0 1 – 5; 1 – 10; 1 – 20; 1 – 60; 1 – 80; 1 – 100 1 - 100 Study Species a Biological Data b Analytical Process c Resource Selection Function d Graham 2001 Ramphastos sulfuratus Relocation (Telem/HR) One Stage E HSF Gurrutxaga et al. 2010 Capreolus capreolus; Sus scrofa; Cervus elaphus; Martes martes; Felis silvestris; Genetta genetta; Meles meles; Martes foina (comb) Expert Opinion One Stage EO None Hagerty et al. 2011 Gopherus agassizii Detection (from Nussear et al. 2009) Validated with Genetic Dist (pop) Hepcan et al. 2009 Hyaena hyaena; Lynx lynx; Caracal caracal; Felis chaus (sep) Expert Opinion Hokit et al. 2010 Sceloporus woodi Expert Opinion Validated with Genetic Dist (pop) One Stage E* PSF One Stage EO None One Stage EO* None Environmental Data e Parametersf Typeg h Grain Extent i Analytical Process Resistance Value Range j LU/LC Cat 5m 2.36 km2 Compositional analysis was used on MCPs for each individual to obtain time spent in each habitat relative to availability. Author converted results to costs. LU/LC; Zoning; Traffic; Viaducts & Tunnels Cat 20m 7224 km2 None 1 - 1000 0-1 1-3 LU/LC; DEM; Slope; Aspect; TRI; Smoothness; Soil Density; Depth to bedrock; Rock percentage; Precip Cat & Cont 1 km ~160,000 km2 Generalized Regression Analysis and Spatial Prediction (GRASP) was used to build models and ROC was used to evaluate models. Resultant model had a floating point value ranging from 0-1 for suitability. Inverse of these values were used for RSurface (1-x). LCP costs between populations and resistance distance (CircuitScape) between pairs of individuals were correlated with genetic distances using Mantel tests within a causal modeling framework. LU/LC; Roads Cat 100m 18,905 km2 Weighted LC at 55% and Road density at 45% NP 32.2 km2 Expert Opinion was used to develop an a priori resistance surface. LC Distance and a pair-wise isolation parameter based on landscape metrics between pairs of individuals was correlated with genetic distances using Mantel tests. NP LU/LC Cat 2m Study Species a Biological Data b Analytical Process c Resource Selection Function d Huber et al. 2010 Cervus elaphus nanodes; lynx rufus; Antilocapra Americana; Thamnophis gigas; Vulpes macroitis mutica (sep) Expert Opinion One Stage EO None Hurme et al. 2007 Pteromys volans Expert Opinion One Stage EO None Janin et al. 2009 Bufo bufo Expert Opinion Detection Two Stage EG E PSF Environmental Data e Parametersf Typeg h Grain Extent i Analytical Process Resistance Value Range j LU/LC; Roads; Human Dev; Natural; Management Status Cat & Cont 356m (13.3 ha hexagons) ~108,779 km2 Expert Opinion was used to quantify the LU/LC variable for the HSI. Researcher opinion was used for the other variables. LU/LC was given half the overall weight of all parameters. HSI was developed for each species and scaled from 0 – 1. Inverse of HSI values used for resistance values. LU/LC Cat 25m 374.5 km2 None NP NP (Study area 1); 246 km2 (Study area 2) Expert opinion was used to select bounded parameter space and 5 resistance values for each of the 4 environmental variables that were tested (forest, meadow, crop, urban). The combination of parameters resulted in 54 a priori resistance surfaces for each migration distance. Logistic regression was used to test models with occurrence data. Then parameter space was refined and process was repeated. 1 – 6; 1 – 7;1 – 10; 1 – 15; 1 – 28; LU/LC; Roads; Hydro Cat 15m 0-1 Study Kautz et al. 2006 Species a Puma concolor cForyi Biological Data b Detection & Relocation (Telem/HR); Expert Opinion Analytical Process c One Stage E One Stage E One Stage EO Kindall & VanManen 2007 Ursus americanus Detection (Telem) One Stage E Klug et al. 2011 Coluber constrictor flaviventris Expert Opinion Genetic Dist (Individ) Two Stage EGE Resource Selection Function d Environmental Data e Parametersf Typeg h Grain Extent i PSF HSF LU/LC; Roads Cat 30m 60,256 km2 LU/LC (converted to landscape metrics) Cont 447 m ~ 900 km2; and ~6,300 km2 LU/LC Cat 150 m 13,500 km2 None PSF MSF Analytical Process Compositional analysis was used to identify proportions of land cover types within individual fixed kernel home ranges that differed from proportion of land cover in the study area. Also used Euclidean distance analysis to identify differences in mean distances from each land cover type to both radiotelemetry locations and random locations in the study area. Used results of these 2 analyses to rank environmental parameters. Used resistance values of 1 – 11 for the results from the compositional analysis and 1 – 10 for the results of the Euclidean distance analysis. Researcher opinion was used to assign resistance values to water and roads. Used weights-of-Evidence to model habitat preferences. Took inverse of these values for resistance values. Expert opinion was used to develop a priori resistance surfaces. Resistance Distance (CircuitScape) between pairs of individuals was correlated with genetic distances using Mantel tests. Resistance Value Range j 1 – 20 NP 1 - 100 Study Species a Biological Data b Analytical Process c Resource Selection Function d Koscinski et al. 2009 Hypsiboas andinus Expert Opinion Genetic Dist (Pop) Two Stage EG E MSF Kuemmerle et al. 2011 Bison bonasus Detection (telem) (from Kuemmerle et al. 2010) One Stage E PSF Kuroe et al. 2011 Reithrodontomys spp. Detection One Stage E MSF Lada et al. 2008 Antechinus flavipes Expert Opinion Genetic Dist (Pop) Two Stage EG E MSF Environmental Data e Parametersf Typeg h Grain Extent i LU/LC Cat 90m ~ 70,000 km2 LC; Slope; Setts; Roads; Hydro Cat & Cont 500m ~ 210,000 km2 LU/LC Cat 1m ~ 600 km2 LU/LC; Roads; Hydro Cat 50m ~2,000 km2 Analytical Process Expert opinion was used to develop a priori resistance surfaces. LCP Length between pairs of individuals was correlated with genetic distances using Mantel tests. Used presence points to develop a HSI using MAXENT (from Kuemmerle et al. 2010). Took inverse of HSI values for resistance values. Scaled from 1 – 10 then assigned barriers to roads, settlements, and major water bodies. Proportion of land use type that is occupied within a rectangular strip between populations was used in a Bayesian estimation with a Markov Chain Monte Carlo algorithm to estimate resistance for each land use type within a connectivity function. Varied widths of rectangular strip from 20 – 100m at 20m intervals. Expert opinion was used to develop a priori resistance surfaces. LC Cost and LP Length between pairs of individuals were correlated with genetic distances using Mantel tests. Resistance Value Range j 1 and N/A; 1 - 80 1 – 200 0 – 50 0 - 100 Study Species a Biological Data b Analytical Process c Resource Selection Function d Environmental Data e Parametersf Typeg Laiolo & Tella 2006 Chersophilus duponti Detection Validated with Vocal Dissimilarity One Stage E* PSF LU/LC; DEM; Slope; Precip Larkin et al. 2004 Ursus americanus floridanus Expert Opinion One Stage EO None LU/LC; Human Dev; Roads LaRue & Nielsen 2008 Puma concolor Lee-Yaw et al. 2009 LePichon et al. 2006 Li et al. 2010 Expert Opinion One Stage EO None Rana sylvatica Expert Opinion Genetic Dist (Pop) Two Stage EG E MSF Barbus barbus Expert Opinion One Stage EO Ailuropoda melanoleuca Expert Opinion One Stage EO None None Cat Cat h Grain Extent i Analytical Process 100m ~360,000 km2 Used presence points and pseudo-absence points within a Bayesian estimator to obtain HSI. Multiplied inverse of HSI values to obtain the resistance values. Used acoustic dissimilarity of lark calls between individual larks as a measure of geographic distance. LCP Cost and LP Length between pairs of individuals were correlated with acoustic dissimilarity using Mantel tests. 30m 23,000 km2 None Analytical Hierarchy Process for pair-wise comparison and weighting of environmental variables for HSI. Values were averaged across experts. Used inverse of HSI for resistance values. Expert opinion was used to develop a priori resistance surfaces. Resistance Distance (CircuitScape) between pairs of individuals was correlated with genetic distances using Mantel tests. Resistance Value Range j 0 - 100 1 – 100 and barrier LU/LC; Roads; Hydro; Slope; Human Population Density Cat 90m 3,182,294 km2 LU/LC; Slope; CTI Cat & Cont 2 km 1,600,000 km2 LU/LC; Substrate; Current Velocity; Water depth Cat & Cont 1m NP None NP 2000 km2 AHP for pair-wise comparison and weighting of environmental variables for HSI. Used inverse of HSI for resistance values. 0.002 – 0.095 LU/LC; Slope; Roads; Hydro Cat 5m 0.05 – 0.2 NP (conductance not resistance) Study Magle et al. 2009 McRae & Beier 2007 Species a Cynomys ludovivianus Gulo gulo Biological Data b Expert Opinion One stage EO Expert Opinion One Stage EO Michels et al. 2001 Daphnia ambigua Expert Opinion and Relocation (dispersal rates) Genetic Dist (pop) Murphy et al. 2010 Rana luteiventris Expert Opinion Genetic Dist (Pop) Murtskhvaladze et al. 2010 Nichol et al. 2010 Nikolakaki 2004 O’Brien et al. 2006 Ursus arctos Columbus livia; Passer montanus; Milvus lineatus; Orthotomos sutorius; P. major; Phylloscopus inornatus (comb) Phoenicurous phoenicurous Rangifer tarandus caribou Analytical Process c Two Stage EE Two Stage EG E Resource Selection Function d None None MSF MSF MSF Expert Opinion Genetic Dist (Individ) Two Stage EG E Expert Opinion One Stage EO None Expert Opinion One Stage EO None Detection (Telem) One Stage E MSF PSF Environmental Data e Parametersf Typeg h Grain Extent Resistance Value Range j i Analytical Process 0.71 – 10.75 NP LU/LC; Roads; Hydro Cat 10m ~ 374 km2 AHP for pair-wise comparison and weighting of environmental variables based on relative impermeability of variables. Already developed Habitat/Nonhabitat map Cat 5 km; 50 km (tested both) ~ 1,200,000 km2 None Anisotropic surface; flow rate Cont 0.5m ~ 6km2 LU/LC; DEM; CTI; Temp Cat & Cont 30m ~ 54 km2 Expert opinion was used to develop 2 a priori resistance surfaces. Dispersal rates were used to create a third resistance surface. LC distance between pairs of populations was correlated with genetic distances using Mantel tests. Expert opinion was used to develop a priori resistance surfaces for use in gravity models. Evaluated models with measures of gene flow (1 – genetic distance). Expert opinion was used to develop a priori resistance surfaces. LC Distance between pairs of individuals was correlated with genetic distances using Mantel tests. NP NP Used actual values for Elevation, Slope, and density of human settlements. Used reverse values for % cover. DEM; Slope; Settlement; % cover Cat OR Cont 500m 259,000 km2 LU/LC Cat 4m; 16m; 20m (different scenarios) 160 km2 Calculated fraction of each pixel covered by trees and used that as environmental variable. 5 – 50; 5 - 100 LU/LC; Hydro; Roads Cat 20m 101,227 km2 None 1 - 25 RSF used to compute probability of occurrence. Inverse of RSF values used for resistance values 1 – 3.5952 LU/LC Cat 50m 90 km 2 a Biological Data b Study Species Patrick & Gibbs 2010 Chelydra serpentine; Chrysemys picta picta (comb) Expert Opinion Emys orbicularis Expert Opinion generic forest dependent species Expert Opinion Pereira et al. 2011 Pinto & Keitt 2009 Pullinger & Johnson Purrenhage et al. 2009 Rangifer tarandus caribou Ambystoma aculatum Expert Opinion OR Detection (Telem) Analytical Process c One Stage EO One Stage EO One Stage EO One Stage EO One Stage E Expert Opinion Genetic Dist (Pop) Two Stage EG E Rabinowitz & Zeller Panthera onca Expert Opinion One Stage EO Ray & Burgman 2006 Cervus unicolor Expert Opinion One Stage EO Resource Selection Function d None None None Environmental Data e Parametersf Typeg h Grain Extent i Analytical Process Resistance Value Range j LU/LC; Hydro Cat 30m ~ 7 km2 None 0 - 50 LU/LC Cat NP ~ 170 km2 None 1 - 100 LU/LC Cat & Cont 500m 111 km2 None 0.057 - 1 For Expert Opinion, used AHP for pair-wise comparison and weighting of environmental variables based on relative impermeability of variables. For Presence data was analyzed within an RSF (conditional fixed effects logistic regression). Linearly transformed RSF to a 0-1 scale. Inverse of this scale was used to generate resistance values which was then reclassified to 1 – 10. Expert opinion was used to develop a priori resistance surfaces. LC Distance between pairs of individuals was correlated with genetic distances using Mantel tests. Cat & Cont 25m 5,100 km2 PSF LU/LC; Hydro; Roads; Slope; Aspect; DEM; Predation risk MSF LU/LC; Roads; Traffic Cat NP 2,100 km2 LC; DEM; % Cov; Roads; Setts; Human Pop Density Cat 1 km 1,900,000 km2 Averaged values across experts 1 - 10 LU/LC; Solar and Topographic exp Cat & Cont 100m ~240,000 km2 Created HSI. Inverse of HIS values were used for resistance values. 1 –200 (1 – 100 and 200) None None None 1 - 10 NP Study Species a Richard & Armstrong 2010 Petroica longipes RichardsZawacki 2009 Atelopus varius Biological Data b Expert Opinion Pathway (Telem/Steps) Detection OR Expert Opinion Genetic Dist (pop) Analytical Process c Resource Selection Function d Two Stage EG E SSF One Stage E* EO* PSF None Environmental Data e Parametersf Typeg h Grain Extent i LU/LC Cat 15m 150 km2 LU/LC; Slope; Climate Cat & Cont 90m; 1km ~4,800 km2 Analytical Process Expert opinion was used to develop a priori resistance surfaces. Step Selection Function was used where used steps were compared with available. Cost distances of all steps were standardized by dividing the step value by the Euclidean distance between the start and end of the step (mean resistance per meter). Conditional logit models were used to compare used vs available. Developed 3 a priori resistance surfaces. One was based on a MAXENT analysis that resulted in a climate suitability gradient. Suitability values were transformed so the most suitable variables had a resistance of 1. The other two were based on expert opinion and literature. LCP Length between pairs of individuals was correlated with genetic distances using Mantel tests. Resistance Value Range j 1 - 100 1 - 100 a Study Species Ricketts 2001 Cercyonis sthenele; Coenonympha tullia; Oeneis chryxus; Erebia epipsodea; Phyciodes campestris; Chlosyne palla; Speyeria atlantis; Speyeria mormonia; Pieris callidice; Pieris protodice; Euchloe ausonia; Plebejus acmon; Glaucopsyche lygdamus; Everes amyntula; Plebejus saepiolus; Plebejus glandon; Plebejus Melissa; Lycaena rubidus; Lycaena helloides; Lycaena nivalis; Lycaena heteronea (grouped species into taxa and used 6 taxa separately) RodriguezFreire & CrecenteMaseda 2008 Canis lupus Rouget et al. 2006 Loxodonta africana Savage et al. 2010 Ambystoma macrodactylum sigillatum Biological Data b Relocation (markrelease recapture) Analytical Process c One Stage E Resource Selection Function d MSF Expert Opinion One Stage EO None Expert Opinion One Stage EO None Expert Opinion Genetic Dist (Pop) Two Stage EG E MSF Environmental Data e Parametersf Typeg LU/LC Cat h Grain 1m Extent i Analytical Process Resistance Value Range j ~.48 km2 Modeled frequency of movement as an inverse function of resistance distance for various land cover types and combinations to obtain resistance values. 1 – 12.6 1 - 255 LU/LC; Roads; Setts; Human Pop Dens; % Cov; Visibility Cat & Cont 25m 30,000 km2 Assigned suitability values for each environmental parameter. Scaled all to same value range. Combined with weights derived from AHP exercise. Subtracted suitability values from 256 to obtain resistance values. LU/LC; Protected Areas; Predicted development; Cat & Cont 25m aggregated to 1000m 105,454 km2 None 0 – 5000; 1 – 12,000 (2 diff surfaces) ~ 1,600 km2 Expert opinion was used to develop a priori resistance surfaces. LCC COST (constrained to lowest 2% of values) and LCP Cost between pairs of individuals was correlated with genetic distances using Mantel tests. NP LU/LC; Hydro; DEM Cat & Cont 30m Study Species a Biological Data b Analytical Process c Resource Selection Function d Schadt et al. 2002 Lynx lynx Expert Opinion One Stage EO None Schooley & Branch 2009 Neofiber alleni Expert Opinion Detection Two Stage EG E MSF Schooley & Wiens 2005 Chelinidea vittiger Expert Opinion Detection Two Stage EG E MSF Schwartz et al. 2009 Gulo gulo Expert Opinion Genetic Dist (Individ) Two Stage EG E Shanahan et al. 2011 Sericornis citreogularis; Sericornis frontalis (sep) Expert Opinion Genetic Dist (Individ) Two Stage EG E Shen et al. 2008 Ailuropoda melanoleuca Expert Opinion One Stage EO Environmental Data e Parametersf Typeg h Grain Extent i LU/LC Cat 1 km 374,000 km2 LU/LC Cat 30m 195 km2 Vegetation height Cat NP 500 m2 plots (2) MSF Persistent spring snow cover Cat 500m ~275,000 km2 MSF LU/LC; DEM; Human Dev Cat 10m ~ 42 km2 LU/LC; DEM; Slope; Aspect; Human Dev Cat 30m 34,623 km2 None Analytical Process Proportion of telemetry fixes in each habitat type helped inform researcher decisions for selection of resistance values. Expert opinion was used to develop a priori resistance surfaces. Developed incidence function models and determined which model best explained patch occupancy by using logistic regression and AIC weights. Expert opinion was used to develop a priori resistance surfaces. Developed incidence function models and determined which model best explained patch abundance by using regression modeling and AIC weights. Expert opinion was used to develop a priori resistance surfaces. LC Distance between pairs of individuals was correlated with genetic distances using Mantel tests. Expert opinion was used to develop a priori resistance surfaces. LC Distance between pairs of individuals was correlated with genetic distances using Mantel tests. AHP used for weighting environmental variables. Multiplied resistance values by weights to arrive at resistance values. Resistance Value Range j 1 – 1000 (1, 20, and 1000) 1 - 100 0.95 – 2.68 1 – 5; 1 – 10; 1 – 15; 1 – 20; 1 – 50; and 1 - 100 1-8 1 - 50 Study Shirk et al. 2010 Short Bull et al. 2011 Species a Oreamnos americanus Ursus americanus Biological Data b Expert Opinion Genetic Dist (Individ) Expert Opinion Genetic Dist (Ind) Analytical Process c One Stage E Two Stage EG E Resource Selection Function d MSF MSF Environmental Data e Parametersf Typeg LU/LC; DEM; Roads LU/LC; DEM; Roads Cat & Cont Cat & Cont h Grain Extent i 30m aggregated to 450m 36,500 km2 90m 11 study sites: 842; 3662; 4696; 2761; 3616; 1605; 1287; 1049; 2168; 3864; 6574; 3000 km2 Analytical Process Used expert opinion consensus on resistance values as a base line. Resistance values of each environmental variable was evaluated univariately by systematically increasing or decreasing resistance values and testing for correlation of Resistance Distance (CircuitScape) with genetic distance using Mantel tests. Summed results of resistance values for each parameter from the univariate analysis to create multivariate resistance surface. Held 3 parameters constant and systematically increased and decreased values of test parameter until a peak of support was reached. If resistance values changed in multivariate analysis, reran multivariate analysis with new values. Causal modeling was used to compete models. Expert opinion was used to develop a priori resistance surfaces. LCP lengths between pairs of individuals were correlated with genetic distances using Mantel tests. Resistance Value Range j 1 – 80 and 100,000 for barriers 1-10 Study Species a Biological Data b Stevens et al. 2006 Bufo calamita Relocation (from Stevens et al. 2004, 2006b) Genetic Dist (pop) Sutcliffe et al. 2003 H. virgaureae; A. hyperantus (sep) Expert Opinion Relocation (Capture-MarkRecapture) Analytical Process c Two Stage EE Two Stage EG E Resource Selection Function d MSF MSF MSF Environmental Data e Parametersf Typeg h Grain Extent LU/LC Cat 3m ~ 98 km2 LU/LC Cat 5m 2.4 km2 i Analytical Process Created one resistance surface using effective movement speed through surrogates of various environmental variables (Stevens et al. 2004). Created a second resistance surface using a measure of preference for environmental parameters (mean percentage of individuals entering an environment from a different one) (Stevens et al.2006b). For the preference surface subtracted preference from 100 to obtain resistance values. LCP Length and LCP Cost between pairs of individuals were correlated with genetic distances using Mantel tests. Expert opinion was used to develop a priori resistance surfaces. Using Capture-Mark-Recapture data, exchange ratios between habitat patches were calculated. LCP Cost between habitat patches was correlated with exchange ratios between populations using Mantel tests. Resistance Value Range j 1 – 100 and 10,000 as barrier 1 - 100 Study Species a Biological Data b Analytical Process c Resource Selection Function d Thatcher et al. 2009 Puma concolor coryi Relocation (Telem/HR) One Stage E Verbeylen et al. 2003 Sciurus vulgaris L. 1758 Expert Opinion Detection Two Stage EG E MSF Vignieri 2005 Zapus trinotatus Expert Opinion Genetic Dist (pop) Two Stage EG E MSF Vos et al. 2001 Rana arvalis Genetic Dist (pop) One Stage E MSF HSF Environmental Data e Parametersf Typeg h Grain Extent i LU/LC; Roads; Human Pop Dens; Hydro Cont (proporti ons) 30m 78,427 km2 LU/LC; Human Dev; Roads; Canals Cat 2m 163 km2 DEM; Hydro Cont & Cat 10m 945 km2 LU/LC; Roads; Traffic Cat NP ~ 36km2 Analytical Process Percentage of each environmental variable in the area was calculated with a moving window (3,280 m radius which is equivalent to the mean daily movement rate). Fixed kernel home ranges were used to calculate the Mahalanobis distance. Small values of Mahalanobis distance represent landscape conditions similar to those in HRs, large values represent different conditions. Assumed higher Mahalanobis distances would increase resistance to movement. Rescaled distances from 0 -1. Expert opinion was used to develop a priori resistance surfaces. Presence surveys were categorized into 5 classes. Logistic regression and AIC values were used to identify models that most predicted presence state. Expert opinion was used to develop a priori resistance surfaces. LCP Distance between pairs of individuals was correlated with genetic distances using Mantel tests. Proportion of environmental variable within a 200m wide strip between populations was correlated to genetic distances using Mantel tests. Resistance Value Range j 0-1 1 – 1000 and 10,000 as barrier NP 0 - 142 Study Walker et al. 2007 Wang et al. 2008 Wang et al. 2009 Species a Lagidium viscacia Biological Data b Expert Opinion Genetic Dist (pop) Analytical Process c Two Stage EG E Resource Selection Function d MSF Niviventer coninga Detection Genetic Dist (individ) Two Stage EE PSF MSF Ambystoma californiense Expert Opinion Genetic Dist (pop) One Stage E MSF Environmental Data e Parametersf Typeg h Grain 332m Extent 12,000 km2 Relief; Hydro Cat LU/LC; NDVI; Aspect; Slope; Hum Dev; Roads; Hydro Cont (converted categorical variables to continuous 10m by calculating ‘distance to’) 100 km2 LU/LC Cat 10 km2 1m i Analytical Process Used presence-absence data to inform resistance values for the relief variable. Expert opinion was used to develop resistance values for the hydro variable. LC Distance between pairs of individuals was correlated with genetic distances using Mantel tests. Produced HSI from presence points using ENFA. Created a priori resistance surfaces by altering representation of HSI variables. LCP Distance between pairs of individuals was correlated with genetic distances using Mantel tests. Expert opinion was used to develop a priori resistance surfaces for use in gravity models.LCP Cost between population pairs were compared to measures of gene flow. Assumed rate of gene flow is inversely proportional to cost. If a LCP Cost fell within the 95% confidence interval of the gene flow estimate then that resistance surface was considered biologically accurate. Resistance Value Range j 1 - 1000 0 - 1000 1 - 10 Study Species a Biological Data b Analytical Process c Resource Selection Function d Environmental Data e Parametersf Typeg h Grain Extent i Analytical Process Wasserman et al. 2010 Martes americana Expert Opinion Genetic Dist (individ) Two Stage EG E MSF DEM; Roads; Seral stage; % Canopy Cat & Cont 30m ~5,400 km2 Used expert opinion to develop a priori resistance values for each environmental variable. Resistance values of each environmental variable were evaluated univariately using LCP Costs and Mantel tests. Univariate results were combined into multiple multivariate resistance surfaces. These resistance surfaces were evaluated for correlation with genetic distances using LCP Costs and Mantel tests in a Causal modeling framework. Watts et al. 2010 Generic focal species (sep) Expert Opinion One Stage EO None LU/LC; Roads; Buildings Cat NP 60 km2 None Wikramanayake et al. 2004 Panthera tigris Expert Opinion One Stage EO None LU/LC; DEM Cat 30m ~75,000 km2 Zalewski et al. 2009 Neovison vison Expert Opinion Genetic Dist (pop) Two Stage EG E MSF Zetterberg et al. 2010 Bufo bufo Expert Opinion One Stage EO None Zimmermann & Breitenmoser 2007 a Lynx lynx Expert Opinion One Stage EO None Larger habitat patches were given lower resistance values. Expert opinion was used to develop a priori resistance surfaces. LC Distance between pairs of individuals was correlated with genetic distances using Mantel tests. Resistance Value Range j 1 - 10 1 - 50 1 - 25 DEM; Hydro Cat 5km 500 km2 (Study area 1); 750 km2 (Study area 2) LU/LC Cat 30m ~900 km2 None 1 - 50 14,000 km2 Presence points from dispersing individuals from previous study (Zimmermann 2004) was used to guide expert assignment of resistance values. 1 - 1000 LU/LC Cat 1km 1 - 100 Target species. Parenthetical notations refer to if the resistance values for multiple species were combined into a single surface (comb) or modeled separately (sep). Biological input data used to parameterize resistance surfaces includes expert opinion, detection, movement, or genetic data. c Analytical process used: One Stage refers to processes that develop a resistance surface in a single analytical step, Two Stage refers to processes that develop multiple resistance surfaces in the first step for testing with empirical data in the second step. Analytical Process types: EO, One-stage expert; EG E, Two-stage expert-guided empirical; E One-stage empirical; EE, Two-stage empirical. d Resource Selection Function used: PSF, Point Selection Function, MSF, Matrix Selection Function, SSF, Step Selection Function, PathSF, Path Selection Function. e Environmental parameters used to parameterize resistance surfaces. f Environmental data type. Untransformed base layers are listed. LU/LC, land use/land cover; Hydro, hydrologic features including rivers and wetlands; DEM, elevation; TRI, topographic ruggedness index; NDVI, greenness index; CTI, compound topographic index; Roads, roads and other linear features like railways and ditches; % canopy, Percent canopy cover; Vapor, Water vapor density; Temp, temperature; Hum b Dev, Buildings and other human development features; Traffic, Traffic data such as volume or frequency; Precip, Precipitation; Solar and topographic exp, solar and topographic exposure; Climate, climactic variables combined into one parameter; Human pop dens, Human population density. g Representation of environmental parameters. Cat, Categorical; Cont, Continuous. h Resolution of environmental parameters used. Multiple grain sizes indicate more than one resolution was used. I Extent of study area. Multiple study area sizes indicate more than one study area was used. j Range of resistance values provided. Multiple ranges indicate, a) more than one parameterization was performed for a single target species, b) more than one model was considered appropriate, or c) values are for different target species in same study area. Appendix References Adriaensen, F., J.P. Chardon, G. De Blust, E. Swinnen, S. Villalba, H. Gulinck, and E. Matthysen. 2003. The application of ‘least-cost’ modeling as a functional landscape model. Landscape and Urban Planning 64: 233–247. Bartelt, P.E., R.W. Klaver, and W.P. Porter. 2010. Modeling amphibian energetics, habitat suitability, and movements of western toads, Anaxyrus (=Bufo) boreas, across present and future landscapes. Ecological Modelling 221: 2675-2686. Bauer, D.M., P.W.C. Paton, and S.K. Swallow. 2010. Are wetland regulations cost effective for species protection? A case study of amphibian metapopulations. Ecological Applications 20: 798-815. Beazley, K., L. Smandych, T. Snaith, F. MacKinnon, P. Austen-Smith, Jr., and P. Dunker. 2005. Biodiversity considerations in conservation system planning: Map-based approach for Nova Scotia, Canada. Ecological Applications 15: 2192-2208. Beier, P., D.R. Majka, and S.L. Newell. 2009. Uncertainty analysis of least-cost modeling for designing wildlife linkages. Ecological Applications 19: 2067-2077. Braunisch, V., G. Segelbacher, and A.H. Hirzel. 2010. Modelling functional landscape connectivity from genetic population structure: a new spatially explicit approach. Molecular Ecology 19: 3664-3678. Broquet, T., N. Ray, E. Petit, J.M. Fryxell, and F. Burel. 2009. Genetic isolation by distance and landscape connectivity in the American marten (Martes americana). Landscape Ecology 21: 877-889. Bunn, A.G., D.L. Urban, and T.H. Keitt. 2000. Landscape connectivity: A conservation application of graph theory. Journal of Environmental Management 59: 265-278. Chardon, J.P., F. Adriaensen, and E. Matthysen. 2003. Incorporating landscape elements into a connectivity measure: a case study for the Speckled wood butterfly (Pararge aegeria L.). Landscape Ecology 18: 561573. Chetkiewicz, C.-L.B., and M.S. Boyce. 2009. Use of resource selection functions to identify conservation corridors. Journal of Applied Ecology 46: 1036-1047. Clark, R.W., W.S. Brown, R. Stechert, and K.R. Zamudio. 2008. Integrating individual behavior and landscape genetics: the population structure of timber rattlesnake hibernacula. Molecular Ecology 17: 719-730. Compton, B.W., K. McGarigal, S.A. Cushman, and L.R. Gamble. 2007. A Resistant-Kernel Model of Connectivity for Amphibians that Breed in Vernal Pools. Conservation Biology 21: 788-799. Coulon, A., J.F. Cosson, J.M. Angibault, B. Cargnelutti, M. Galan, N. Morellet, E. Petit, S. Aulagnier, and A.J.M. Hewison. 2004. Landscape connectivity influences gene flow in a roe deer population inhabiting a fragmented landscape: an individual-based approach. Molecular Ecology 13: 2841-2850. Cushman, S.A. and J.S. Lewis. 2010. Movement behavior explains genetic differentiation in American black bears. Landscape Ecology 25: 1613-1625. Cushman, S.A., K.S. McKelvey, J. Hayden, and M.K. Schwartz. 2006. Gene-flow in complex landscapes: testing multiple hypotheses with causal modeling. American Naturalist 168: 486-499. Cushman, S.A., K.S. McKelvey, and M.K. Schwartz. 2009. Use of empirically derived source-destination models to map regional conservation corridors. Conservation Biology 23: 368-376. Dedecker, A.P., K. Van Melckebeke, P.L.M. Goethals, and N. DePauw. 2007. Development of migration models for macroinvertebrates in the Zwalm river basin (Flanders, Belgium) as tools for restoration management. Ecological Modelling 203: 72-86. Desrochers, A., M. Bélisle, and J. Morand-Ferron. 2011. Integrating GIS and homing experiments to study avian movement costs. Landscape Ecology 26: 47-58. Driezen, K., F. Adriaensen, C. Rondinini, C.P. Doncaster, and E. Matthysen. 2007. Evaluating least-cost model predictions with empirical dispersal data: A case-study using radiotracking data of hedgehogs (Erinaceus europaeus). Ecological Modelling 209: 314-322. Emaresi, G., J. Pellet, S. Dubey, A.H. Hirzel, and L. Fumagalli. 2011. Landscape genetics of the Alpine newt (Mesotriton alpestris) inferred from a strip-based approach. Conservation Genetics 12: 41-50. Epps, C.W., B.M. Mutayoba, L. Gwin, and J.S. Brashares. 2011. An empirical evaluation of the African elephant as a focal species for connectivity planning in East Africa. Diversity and Distributions 17: 603-612. Epps, C.W., J.D. Wehausen, V.C. Bleich, S.G. Torres, and J.S. Brashares. 2007. Optimizing dispersal and corridor models using landscape genetics. Journal of Applied Ecology 44: 714-724. Estrada-Peña, A. 2003. The relationships between habitat topology, critical scales of connectivity and tick abundance Ixodes ricinus in a heterogeneous landscape in northern Spain. Ecography 26: 661-671. Fall, A. M.J. Fortin, M. Manseau, and D. O’Brien. 2007. Spatial graphs: Principles and applications for habitat connectivity. Ecosystems 10: 448-461. Ferreras, P. 2001. Landscape structure and asymmetrical inter-patch connectivity in a metapopulation of the endangered Iberian lynx. Biological Conservation 100: 125-136. Flamm, R.O., B.L. Weigle, I, E. Wright, M. Ross, and S. Aglietti. 2005. Estimation of manatee (Trichechus manatus latirostris) places and movement corridors using telemetry data. Ecological Applications 15: 1415-1426. A.D. Flesch, C.W. Epps, J.W. Cain III, M. Clark, P.R. Krausman, and J.R. Morgart. 2009. Potential effects of the United States-Mexico border fence on wildlife. Conservation Biology 24: 171-181. Foltête, J.C., K. Berthier, and J.F. Cosson. 2008. Cost distance defined by a topological function of landscape. Ecological Modelling 210:104-114. Freeman, R.C., and K.P. Bell. 2011. Conservation versus cluster subdivisions and implications for habitat connectivity. Landscape and Urban Planning 101: 30-42. Gonzales, E.K., and S.E. Gergel. 2007. Testing assumptions of cost surface analysis—a tool for invasive species management. Landscape Ecology 22:1155-1168. Graham, C.H. 2001. Factors influencing movement patterns of keel-billed toucans in a fragmented tropical landscape in southern Mexico. Conservation Biology 15: 1789-1798. Gurrutxaga, M., P.J. Lozano, and G. del Barrio. 2010. GIS-based approach for incorporating the connectivity of ecological networks into regional planning. Journal for Nature Conservation 18: 318-326. Hagerty, B.E., K.E. Nussear, T.C. Esque, and C.R. Tracy. 2011. Making molehills out of mountains: landscape genetics of the Mojave desert tortoise. Landscape Ecology 26: 267-280. Hepcan, S., C.C. Hepcan, I.M. Bouwma, R.H.G. Jongman, and M.B. Ozkan. 2009. Ecological networks as a new approach for nature conservation in Turkey: A case study of Izmir Province. Landscape and Urban Planning 90: 143-154. Hokit, G.G., M. Ascunce, J. Ernst, L.C. Branch, and A.M. Clark. 2010. Ecological metrics predict connectivity better then geographic distance. Conservation Genetics 11: 149-159. Huber, P.R., S.E. Greco, and J.H. Thorne. 2010. Spatial scale effects on conservation network design: tradeoffs and omissions in regional versus local scale planning. Landscape Ecology 25: 683-695. Hurme, E., P. Reunanen, M. Monkkonen, A. Nikula, V. Nivala, and J. Oksanesn. 2007. Local habitat patch pattern of the Siberian flying squirrel in a managed boreal forest landscape. Ecography 30: 277-287. Janin, A., J.P. Léna, N. Ray, C. Delacourt, P. Allemand, and P. Joly. 2009. Assessing landscape connectivity with calibrated cost-distance modelling: predicting common toad distribution in a context of spreading agriculture. Journal of Applied Ecology 46: 833-841. Kautz, R., R. Kawula, T. Hoctor, J. Comiskey, D. Jansen, D. Jennings, J. Kasbohm, F. Mazzzotti, R. McBride, L. Richardson, and K. Root. 2006. How much is enough? Landscape-scale conservation for the Florida panther. Biological Conservation 130: 118-133. Kindall, J.L., and F.T. VanManen. 2007. Identifying Habitat Linkages for American Black Bears in North Carolina, USA. Journal of Wildlife Management 71: 487-495. Klug, P.E., S.M. Wisely, K.A. With. 2011. Population genetic structure and landscape connectivity of the Eastern Yellowbelly Racer (Coluber constrictor flaviventris) in the contiguous tallgrass prairie of northeastern Kansas, USA. Landscape Ecology 26: 281-294. Koscinsky, D. A.G. Yates, P. Handford, and S.C. Lougheed. 2009. Effects of landscape and history on diversification of a montane, stream-breeding amphibian. Journal of Biogeography 36: 255-265. Kuemmerle, T., K. Perzanowski, H. Resit Akcakaya, F. Beaudry, T.R. Van Deelen, I. Parnikoza, P. Khoyetskyy, D.M. Waller, and V.C. Radeloff. 2011. Cost-effectiveness of strategies to establish a European bison metapopulation in the Carpathians. Journal of Applied Ecology 48: 317-329. Kuroe, M., N. Yamaguchi, T. Kadoya, and T. Miyashita. 2011. Matrix heterogeneity affects population size of the harvest mice: Bayesian estimation of matrix resistance and model validation. Oikos 120: 271-279. Lada, H., J.R. Thompson, R. MacNally, and A.C. Taylor. 2008. Impacts of massive landscape change on a carnivorous marsupial in south-eastern Australia: inferences from landscape genetics analysis. Journal of Applied Ecology 45: 1732-1741. Laiolo, P., and J.L. Tella. 2006. Landscape Bioacoustics allow detection of the effects of habitat patchiness on population structure. Ecology 87: 1203-1214. Larkin, J.L, D.S. Maehr, T.S. Hoctor, M.A. Orlando, and K. Whitney. 2004. Landscape linkages and conservation planning for the black bear in west-central Florida. Animal Conservation 7: 23-34. LaRue, M.A., and C.K. Nielsen. 2008. Modelling potential dispersal corridors for cougars in Midwestern North America using least-cost path methods. Ecological Modelling 212: 372-381. Lee-Yaw, J.A., A. Davidson, B.H. McRae, and D.M. Green. 2009. Do landscape processes predict phylogeographic patterns in the wood frog? Molecular Ecology 18: 1863-1874. LePichon, C., G. Gorges, P. Boet, J.Baudry, F.Goreaud, and T. Faure. 2006. A spatially explicit resource-based approach for managing stream fishes in riverscapes. Environmental Management 37: 322-335. Li, H., D. Li, T. Li, Q. Qiao, J. Yang, and H. Zhang. 2010. Application of least-cost path model to identify a giant panda dispersal corridor network after the Wenchuan earthquake—Case study of Wolong Nature Reserve in China. Ecological Modelling 221: 944-952. Magle, S.B., D.M. Theobald, and K.R. Crooks. 2009. A comparison of metrics predicting landscape connectivity for a highly interactive species along an urban gradient in Colorado, USA. Landscape Ecology 24: 267280. McRae, B.H., and P. Beier. 2007. Circuit theory predicts gene flow in plant and animal populations. Proceedings of the National Academy of Sciences 104: 19885–19890. Michels, E., K. Cottenie, L. Neys, K. DeGelas, P. Coppin, and L. DeMeester. 2001. Geographical and genetic distances among zooplankton populations in a set of interconnected ponds: a plea for using GIS modelling of the effective geographical distance. Molecular Ecology 10: 1929-1938. Murphy, M.A., R. Dezzani, D.S. Pilliod, and A. Storfer. 2010. Landscape genetics of high mountain frog metapopulations. Molecular Ecology 19: 3634-3649. Murtskhvaladze, M., A. Gavashelishvili, and D. Tarkhnishvili. 2010. Geographic and genetic boundaries of brown bear (Ursus arctos) population in the Caucasus. Molecular Ecology 19: 1829-1841. Nichol, J.E. M.S. Wong, R.Corlett, and D.W. Nichol. 2010. Assessing avian habitat fragmentation in urban areas of Hong Kong (Kowloon) at high spatial resolution using spectral unmixing. Landscape and Urban Planning 95: 54-60. Nikolakaki, P. 2004. A GIS site-selection process for habitat creation: estimating connectivity of habitat patches. Landscape and Urban Planning 64: 77-94. O’Brien, D., M. Manseau, A. Fall, and M.J. Fortin. 2006. Testing the importance of spatial configuration of winter habitat for woodland caribou: An application of graph theory. Biological Conservation 130:70-83. Patrick, D.A., and J.P. Gibbs. 2010. Population structure and movements of freshwater turtles across a roaddensity gradient. Landscape Ecology 25: 791-801. Pereira, M., P. Segurado, and N. Neves. 2011. Using spatial network structure in landscape management and planning: A case study with pond turtles. 100: 67-76. Pinto, N., and T.H. Keitt. 2009. Beyond the least-cost path: evaluating corridor redundancy using a graphtheoretic approach. Landscape Ecology 24: 253-266. Pullinger, M.G., and C.J. Johnson. 2010. Maintaining or restoring connectivity of modified landscapes: evaluating the least-cost path model with multiple sources of ecological information. Landscape Ecology 25: 1547-1560. Purrenhage, J.L., P.H. Niewiarowski, and F.B.-G. Moore. 2009. Population structure of spotted salamanders (Anbystoma maculatum) in a fragmented landscape. Molecular Ecology 18: 235-247. Rabinowitz, A. and K.A. Zeller. 2010. A range-wide model of landscape connectivity and conservation for the jaguar, Panthera onca. Biological Conservation 143: 939-945. Rae, C., K. Rothley, and S. Dragicevic. 2007. Implications of error and uncertainty for an environmental planning scenario: A sensitivity analysis of GIS-based variables in reserve design. Landscape and Urban Planning 79: 210-217. Ray, N., and M.A. Burgman. 2006. Subjective uncertainties in habitat suitability maps. Ecological Modelling 195: 172-186. Richard, Y., and D.P. Armstrong. 2010. Cost distance modelling of landscape connectivity and gap-crossing ability using radio-tracking data. Journal of Applied Ecology 47: 603-610. Richards-Zawacki, C.L. 2009. Effects of slope and riparian habitat connectivity on gene flow in an endangered Panamanian frog, Atelopus varius. Diversity and Distributions 15: 796-806. Ricketts, T.H. 2001. The Matrix Matters: Effective Isolation in Fragmented Landscapes. The American Naturalist 158: 87-99. Rodríguez-Freire, M., and R. Crecente-Maseda. 2008. Directional connectivity of wolf (Canis lupus) populations in Northwest Spain and anthropogenic effects on dispersal patterns. Environmental Modelling and Assessment 13: 35-51. Rouget, M., R.M. Cowling, A.T. Lombard, A.T. Knight, and G.I.H. Kerley. 2006. Designing large-scale conservation corridors for pattern and process. Conservation Biology 20: 549-561. Savage, W.K., A.K. Fremier, and H.B. Shaffer. 2010. Landscape genetics of alpine Sierra Nevada salamanders reveal extreme population subdivision in space and time. Molecular Ecology 19: 3301-3314. Schadt, S., F. Knauer, P. Kaczensky, E. Revilla, T. Wiegand, and L. Trepl. 2002. Rule-based assessment of suitable habitat and patch connectivity for the Eurasian lynx. Ecological Applications 12: 1469-1483. Schooley, R.L., and L.C. Branch. 2009. Enhancing the area–isolation paradigm: habitat heterogeneity and metapopulation dynamics of a rare wetland mammal. Ecological Applications 19: 1708-1722. Schooley, R.L., and J.A. Wiens. 2005. Spatial ecology of cactus bugs: Area constraints and patch connectivity. Ecology 86: 1627-1639. Schwartz, M.K., J.P. Copeland, N.J. Anderson, J.R. Squires, R.M. Inman, K.S. McKelvey, K.L. Pilgrim, L.P. Waits, and S.A. Cushman. 2009. Wolverine gene flow across a narrow climatic niche. Ecology 90: 32223232. Shanahan, D.F., H.P. Possingham, and C. Riginos. 2011. Models based on individual level movement predict spatial patterns of genetic relatedness for two Australian forest birds. Landscape Ecology 26: 137-148. Shen, G., C. Feng, Z. Xie, Z. Ouyang, J. Li, and M. Pascal. 2008. Proposed conservation landscape for giant pandas in the Minshan Mountains, China. Conservation Biology 22: 1144-1153. Shirk, A.J., D.O. Wallin, S.A. Cushman, C.G. Rica, and K.I. Warheit. 2010. Inferring landscape effects on gene flow: a new model selection framework. Molecular Ecology 19: 3603-3619. Short Bull, R.A., S.A. Cushman, R. Mace, T. Chilton, K.C. Kendall, E.L. Landguth, M.K. Schwartz, K. McKelvey, F.W. Allendorf, and G. Luikart. 2011. Why replication is important in landscape genetics: American black bear in the Rocky Mountains. Molecular Ecology 20: 1092-1107. Stevens, V.M., C. Verkenne, S. Vandewoestijne, R.A. Wesselingh, and M. Baguette. 2006. nGene flow and functional connectivity in the natterjack toad. Molecular Ecology 15: 2333-2344. Sutcliffe, O.L., V. Bakkestuen, G. Fry, and O.E. Stabbetorp. 2003. Modelling the benefits of farmland restoration: methodology and application to butterfly movement. Landscape and Urban Planning 63: 1531. Thatcher, C.A., F.T. VanManen, and J.D. Clark. 2009. A habitat assessment for Florida panther population expansion into central Florida. Journal of Mammalogy 90: 918-925. Verbeylen, G., L. DeBruyn, F. Adriaensen, and E. Matthysen. 2003. Does matrix resistance influence Red squirrel (Sciurus vulgaris L. 1758) distribution in an urban landscape? Landscape Ecology 18: 791-805. Vignieri, S.N. 2005. Streams over mountains: influence of riparian connectivity on gene flow in the Pacific jumping mouse (Zapus trinotatus). Molecular Ecology 14: 1925-1937. Vos, C.C., A.G. Antonisse-DeJong, P.W. Goedhart, and M.J.M. Smulders. 2001. Genetic similarity as a measure for connectivity between fragmented populations of the moor frog (Rana arvalis). Heredity 86: 598-608. Walker, R.S., A.J. Novaro, and L.C. Branch. 2007. Functional connectivity defined through cost-distance and genetic analyses: a case study for the rock-dwelling mountain vizcacha (Lagidium viscacia) in Patagonia, Argentina. Landscape Ecology 22: 1303-1314. Wang, I.J., W.K. Savage, and B. Shaffer. 2009. Landscape genetics and least-cost path analysis reveal unexpected dispersal routes in the California tiger salamander (Ambystoma californiense). Molecular Ecology 18: 1365-1374. Wang, Y.H., K.C. Yang, C.L. Bridgman, and L.K. Lin. 2008. Habitat suitability modelling to correlate gene flow with landscape connectivity. Landscape Ecology 23: 989-1000. Wasserman, T.N., S.A. Cushman, M.K. Schwartz, and D.O. Wallin. 2010. Spatial scaling and multi-model inference in landscape genetics: Martes Americana in northern Idaho. Landscape Ecology 25: 16011612. Watts, K., A.E. Eycott, P. Handley, D. Ray, J.W. Humphrey, and C.P. Quine. 2010. Targeting and evaluating biodiversity conservation action within fragmented landscapes: an approach based on generic focal species and least-cost networks. Landscape Ecology 25: 1305-1318. Wikramanayake, E., M. McKnight, E. Dinerstein, A. Joshi, B. Gurung, and D. Smith. 2004. Designing a conservation landscape for tigers in human-dominated environments. Conservation Biology 18: 839-844. Zalewski, A., S.B. Piertnery, H. Zalewska, and X. Lambin. 2009. Landscape barriers reduce gene flow in an invasive carnivore: geographical and local genetic structure of American mink in Scotland. Molecular Ecology 18: 1601-1615. Zetterberg, A., U.M. Mortberg, and B. Balfors. 2010. Making graph theory operational for landscape ecological assessments, planning, and design. Landscape and Urban Planning 95: 181-191. Zimmermann, F., and U. Breitenmoser. 2007. Potential distribution and population size of the Eurasian lynx Lynx lynx in the Jura Mountains and possible corridors to adjacent ranges. Wildlife Biology 13: 406-416.