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Raes - Joossens
Raes - Joossens

How different is anatomy?
How different is anatomy?

... The time was 1998-99  None of the model organism databases used standard terminology to describe biological function  Drosophila sequence was imminent  Largest genome sequenced at that time  Two weeks, 3 dozen scientists, all new software  How could we organize the annotation? ...
CF Overview of CF Genotypin and NSQAP services
CF Overview of CF Genotypin and NSQAP services

... Was the baby homozygous or hemizygous for Y1092H T>C?  hemizygous is when there is only 1 member of a chromosome segment rather than the usual 2 ...
Horizontal gene transfer and the origin of species: lessons from
Horizontal gene transfer and the origin of species: lessons from

... has been shown that 17% of their genomes (i.e. ~800 kb), appears to have been acquired by HGT during the past 100 million years (the housekeeping genes of both organisms are ~90% identical)18. As the majority of this DNA was recruited recently, it is apparent that considerable genetic flux is occurr ...
Single-molecule studies of DNA replication Geertsema, Hylkje
Single-molecule studies of DNA replication Geertsema, Hylkje

... showed that both leading- and lagging-strand synthesis are resistant to dilution confirming the recycling of replication proteins by the T7 replisome (46). In addition, kinetic studies demonstrated that the T4 replisome is highly processive and potentially able to replicate the entire T4 genome (172 ...
Free Full Text ( Final Version , 673kb )
Free Full Text ( Final Version , 673kb )

... nosis as a phenotypic definition. In addition, the lack of conclusive linkage from genome scans could be due to the existence of numerous susceptibility genes having weak individual effects that are difficult to detect and replicate (10). In an attempt to track such susceptibility genes, we focused ...
Recombinant DNA Technology
Recombinant DNA Technology

... 1. How and why do we engineer human genes into bacterial DNA? How do we isolate and manipulate genes in which we are interested? One method scientists commonly use is called recombinant DNA technology. Recombinant DNA technology is the process of cutting and recombining DNA fragments. Usually human ...
2 - GEP Community Server
2 - GEP Community Server

... characterize two mutant alleles in a strain of fruit flies. You will determine (a) whether the mutant alleles are recessive or dominant to their normal counterparts, (b) which chromosomes carry the alleles, and (c) you will map the sex-linked allele to a specific locus on the X chromosome. A project ...
Gene Mutation
Gene Mutation

... Tumour evolution inferred by single-cell sequencing. Nature 472, 90–94 (2011) Mosaic Copy Number Variation in Human Neurons. Science 342, 632 (2013) ...
Introduction to DNA Microarrays
Introduction to DNA Microarrays

... – What proteins are being actively produced by a group of cells? ...
Mutations - GK-12 Program at the University of Houston
Mutations - GK-12 Program at the University of Houston

... on its location. If the mutation occurs in a gene, the result will be an altered protein, but the mutation can also occur in a nongenic region of the DNA. In the latter case, the mutation will have no effect on the organism. Large-Scale Mutation Effects The effects of large-scale mutations are more ...
DNA Repair - WordPress.com
DNA Repair - WordPress.com

Understanding mechanisms of novel gene expression in
Understanding mechanisms of novel gene expression in

... Various theories have been put forward to explain heterosis on the genetic level. One theory is that hybrids merely show complementation of different alleles from the two parents (i.e. genes from one parent compensate for the defects in the other). In terms of gene expression, the extreme view is th ...
Title Heterochromatin Blocks Constituting the Entire
Title Heterochromatin Blocks Constituting the Entire

... primates is that of chimpanzees and bonobos.9 – 12 These species, together with humans, belong to family Hominidae (hominids) and are phylogenetically closest to humans among extant species. Interestingly, humans do not have visible subtelomeric heterochromatin blocks. Another clear example of large ...
A systematic genome-wide analysis of zebrafish protein
A systematic genome-wide analysis of zebrafish protein

... changes detectable during the first 5 dpf in live embryos. Subtle phenotypes that require further intervention, such as immunohistochemistry, are not currently assayed. Finally, the teleost-specific genome duplication might cause paralogue redundancy. While this is possible there are few examples of ...
scores
scores

... The Smith-Waterman algorithm is a local alignment tool used to obtain sensitive pairwise similarity alignments. Smith-Waterman algorithm uses dynamic programming. Operating via a matrix, the algorithm uses backtracing and tests alternative paths to the highest scoring alignments, and selects the opt ...
13.3: RNA and Gene Expression
13.3: RNA and Gene Expression

... • The relationship between genes and their effects is complex. Despite the neatness of the genetic code, every gene cannot be simply linked to a single outcome. • Some genes are expressed only at certain times or under specific conditions. • Variations and mistakes can occur at each of the steps in ...
BLAST Tips - Boston University
BLAST Tips - Boston University

... – http://www.rcsb.org/pdb/home/home.do ...
Practical theory (15-20 min) A phylogeny is the representation of the
Practical theory (15-20 min) A phylogeny is the representation of the

... (“Cladogram”) or as a Phylogram (“Real”), depending on the user's needs. When a branch has length = 0, those sequences are exactly the same. The bigger the distance is, the more separate in evolution the sequences are. ...
Amplification of a DNA Fragment Using Polymerase
Amplification of a DNA Fragment Using Polymerase

... blotting (see introduction to Section V) after being digested with a number of different restriction enzymes, the size and pattern of restriction fragments produced provide a DNA “fingerprint” (Fig. 24-5). Traditionally, forensic science has relied only on blood chemistry and restriction mapping of ...
Mitochondrial DNA
Mitochondrial DNA

... http://www.youtube.com/watch?v=FkcSkADVMIM ...
A protein-based phylogenetic tree for Gram
A protein-based phylogenetic tree for Gram

... rRNA phylogeny. A partial, protein-based phylogenetic tree, derived using amino acid sequence homology of hrcA proteins from Gram-positive bacteria, is presented here, and the results are compared with the phylogenetic trees generated from 16s rRNA, dnaK and dnal sequences. The location of the hrcA ...
Founder Effect for Ullrich-Type CMD in French Canadians
Founder Effect for Ullrich-Type CMD in French Canadians

... transmembrane conductance regulator protein (CFTR) on chromosome 7 that, when mutant, causes cystic fibrosis. First gene replacement therapy. T cells of a four-year old girl were exposed outside of her body to retroviruses containing an RNA copy of a normal ADA gene. This allowed her immune system t ...
Full Text  - Science and Education Publishing
Full Text - Science and Education Publishing

... Abstract The presence of ESBLs in many E. coli strains are of serious concern, since these organisms are the most common cause of different human infections. In this study we isolate an E. coli bacterium with high hydrolytic activity against cefotaxime. The ESBLs production was confirmed by phenotyp ...
Blast intro slides ppt
Blast intro slides ppt

... that affects humans – If yeast contain a protein that is related (homologous) to the protein involved in cystic fibrosis – Then yeast can be used as a model organism to study this disease • Study of the protein in yeast will tell us about the function of the protein in humans David Form - August 15, ...
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Genomics

Genomics is a discipline in genetics that applies recombinant DNA, DNA sequencing methods, and bioinformatics to sequence, assemble, and analyze the function and structure of genomes (the complete set of DNA within a single cell of an organism). Advances in genomics have triggered a revolution in discovery-based research to understand even the most complex biological systems such as the brain. The field includes efforts to determine the entire DNA sequence of organisms and fine-scale genetic mapping. The field also includes studies of intragenomic phenomena such as heterosis, epistasis, pleiotropy and other interactions between loci and alleles within the genome. In contrast, the investigation of the roles and functions of single genes is a primary focus of molecular biology or genetics and is a common topic of modern medical and biological research. Research of single genes does not fall into the definition of genomics unless the aim of this genetic, pathway, and functional information analysis is to elucidate its effect on, place in, and response to the entire genome's networks.
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