Morphogens in biological development: Drosophila example
... The main problem of morphogenesis can be formulated as one question. How do cells know what is their developmental fate? Early in the history of developmental biology it has become clear that for the cells to make a decision on choosing their future, they need to know their position in the developin ...
... The main problem of morphogenesis can be formulated as one question. How do cells know what is their developmental fate? Early in the history of developmental biology it has become clear that for the cells to make a decision on choosing their future, they need to know their position in the developin ...
PPT - wFleaBase
... Comment: -shorter protein is only 44.5378151260504 % of the original protein length. Insufficient. (FL_alt_splice_flag; 0) Stitched EST lacks compatibility with preexisting protein annotations; invalid and no alt-splice template available. Applied to Dappu1_FM5_196379,0 >asmbl_7600-based protein MSF ...
... Comment: -shorter protein is only 44.5378151260504 % of the original protein length. Insufficient. (FL_alt_splice_flag; 0) Stitched EST lacks compatibility with preexisting protein annotations; invalid and no alt-splice template available. Applied to Dappu1_FM5_196379,0 >asmbl_7600-based protein MSF ...
a nucleosomal perspective
... Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective ...
... Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective ...
ABO is one of many blood groups found in human beings. These
... ABO is one of many blood groups found in human beings. These blood group types are names given according to the proteins found near the blood cells, and how they react within the immune system. An antigen protein is one that stimulates a response, and is found on the red blood cell. An antibody is t ...
... ABO is one of many blood groups found in human beings. These blood group types are names given according to the proteins found near the blood cells, and how they react within the immune system. An antigen protein is one that stimulates a response, and is found on the red blood cell. An antibody is t ...
Text S1. Supporting Methods and Results METHODS
... Markings at typical liver genes were qualitatively very similar between our samples and the reference dataset. Of 3,990 liver genes from the UniProtKB Database that matched RefSeq genes, 74% were marked in population A (75% in population B) and 70% in the C57BL/6 dataset. 68% of UniProtKB metabolic ...
... Markings at typical liver genes were qualitatively very similar between our samples and the reference dataset. Of 3,990 liver genes from the UniProtKB Database that matched RefSeq genes, 74% were marked in population A (75% in population B) and 70% in the C57BL/6 dataset. 68% of UniProtKB metabolic ...
RNA-seq Analysis in Galaxy
... • CuffLinks is a program that assembles aligned RNA-Seq reads into transcripts, estimates their abundances, and tests for differential expression and regulation transcriptome-wide. • CuffDiff is a program within CuffLinks that compares transcript abundance between samples ...
... • CuffLinks is a program that assembles aligned RNA-Seq reads into transcripts, estimates their abundances, and tests for differential expression and regulation transcriptome-wide. • CuffDiff is a program within CuffLinks that compares transcript abundance between samples ...
A human laterality disorder associated with a homozygous
... which is maintained by the rotary movement of monocilia on the nodal cells. Defects manifest by abnormal formation and arrangement of visceral organs. The genetic etiology of defects not associated with primary ciliary dyskinesia is largely unknown. In this study, we investigated the cause of situs ...
... which is maintained by the rotary movement of monocilia on the nodal cells. Defects manifest by abnormal formation and arrangement of visceral organs. The genetic etiology of defects not associated with primary ciliary dyskinesia is largely unknown. In this study, we investigated the cause of situs ...
kg3_9
... – For gaps 6 base or less on both mRNA and genome, just ignore gap, filling in with genome if necessary. – Try to turn other gaps into introns if they are not already by wiggling one base on either side of gap. – Break up alignments at remaining gaps that are not intronic. Intronic gaps are at least ...
... – For gaps 6 base or less on both mRNA and genome, just ignore gap, filling in with genome if necessary. – Try to turn other gaps into introns if they are not already by wiggling one base on either side of gap. – Break up alignments at remaining gaps that are not intronic. Intronic gaps are at least ...
The hSEP1 gene is a novel candidate tumor suppressor gene in
... cancers of diverse types) have been shown to be also associated with OGS (2,3). However, the value of these markers for diagnosis and/or prognosis of OGS remains poor. Evidently, more OGS-specific genetic markers need to be identified and characterized for improving management of patients with the d ...
... cancers of diverse types) have been shown to be also associated with OGS (2,3). However, the value of these markers for diagnosis and/or prognosis of OGS remains poor. Evidently, more OGS-specific genetic markers need to be identified and characterized for improving management of patients with the d ...
Fusion gene detection
... For the purpose of this white paper, it is assumed that fusion genes will be identified from paired-end rna sequencing (rna-seq) data. This has the advantage that, by definition, only expressed fusion genes will be found. Whole genome sequencing data can also be used to search for gene fusions but, ...
... For the purpose of this white paper, it is assumed that fusion genes will be identified from paired-end rna sequencing (rna-seq) data. This has the advantage that, by definition, only expressed fusion genes will be found. Whole genome sequencing data can also be used to search for gene fusions but, ...
Genome demethylation and imprinting in the endosperm
... Imprinting occurs in the endosperm of flowering plants. The endosperm, a product of central cell fertilization, is critical for embryo and seed development. Imprinting in the endosperm is mainly due to the inherited differences in gamete epigenetic composition. Studies have also shown that there are ...
... Imprinting occurs in the endosperm of flowering plants. The endosperm, a product of central cell fertilization, is critical for embryo and seed development. Imprinting in the endosperm is mainly due to the inherited differences in gamete epigenetic composition. Studies have also shown that there are ...
Introduction to Molecular Biology and Genomics
... • Gene expression database mining is used to identify intrinsic patterns and relationships in gene expression data. • Traditionally molecular biology has concentrated on a study of a single or very few genes in research projects. • With genomes being sequenced, this is now changing into so-called sy ...
... • Gene expression database mining is used to identify intrinsic patterns and relationships in gene expression data. • Traditionally molecular biology has concentrated on a study of a single or very few genes in research projects. • With genomes being sequenced, this is now changing into so-called sy ...
Results
... unchanged in RT-PCR) and ClNAC15 (whose expression was unchanged in RNA-Seq, but up-regulated in RT-PCR) showed different expression patterns between the two technologies, suggesting the RNA-Seq was a useful and powerful tool to monitor gene expression. • Ten ClNACs(ClNAC2,-3,-17,-4,-9,-11,-21,-12,- ...
... unchanged in RT-PCR) and ClNAC15 (whose expression was unchanged in RNA-Seq, but up-regulated in RT-PCR) showed different expression patterns between the two technologies, suggesting the RNA-Seq was a useful and powerful tool to monitor gene expression. • Ten ClNACs(ClNAC2,-3,-17,-4,-9,-11,-21,-12,- ...
Biology Heritable information provides for continuity of life. (3.A.4
... The inheritance pattern of many traits cannot be explained by simple Mendelian genetics. (3.A.4) Multiple Alleles- Only two alleles existed for the pea characters that Mendel studied, but most genes exist in more than two allelic forms. The ABO blood groups in humans, are determined by three alleles ...
... The inheritance pattern of many traits cannot be explained by simple Mendelian genetics. (3.A.4) Multiple Alleles- Only two alleles existed for the pea characters that Mendel studied, but most genes exist in more than two allelic forms. The ABO blood groups in humans, are determined by three alleles ...
histoneHMM (Version 1.5)
... the use of the command line interface. Since we are also interested in the diagnostic plots we need the corresponding gene expression and annotation data. Here we use DEEP RNA-seq data and the gencode annotation. Get gene expression counts using ’htseq-count’ although it is not length normalized. Al ...
... the use of the command line interface. Since we are also interested in the diagnostic plots we need the corresponding gene expression and annotation data. Here we use DEEP RNA-seq data and the gencode annotation. Get gene expression counts using ’htseq-count’ although it is not length normalized. Al ...
ppt - Chair of Computational Biology
... that bind to unmethylated CpGs and initiate gene transcription. In contrast, methylated CpGs are generally associated with silent DNA, can block methylation-sensitive proteins and can be easily mutated. The loss of normal DNA methylation patterns is the best understood epigenetic cause of disease. I ...
... that bind to unmethylated CpGs and initiate gene transcription. In contrast, methylated CpGs are generally associated with silent DNA, can block methylation-sensitive proteins and can be easily mutated. The loss of normal DNA methylation patterns is the best understood epigenetic cause of disease. I ...
Nguyễn Thị Trang1, Nguyễn Thị Giang1, Vũ Thị Thu Hiền1 1Viện Di
... most important traits for stable stand establishment. In this study, a set of 150 Vietnamese lowland rice cultivars was collected for studying of the “elongation strategy” by using the test tube bioassay screening method. LD (linkage disequilibrium) mapping method was applied to analyze the correlat ...
... most important traits for stable stand establishment. In this study, a set of 150 Vietnamese lowland rice cultivars was collected for studying of the “elongation strategy” by using the test tube bioassay screening method. LD (linkage disequilibrium) mapping method was applied to analyze the correlat ...
Cystic Fibrosis
... clinical variation in CF is evaluated by genotype-phenotype studies. The poor correlation between CFTR genotype and severity of lung disease strongly suggests an influence of environmental and secondary genetic factors (CF modifiers). Several candidate genes related to innate and adaptive immune res ...
... clinical variation in CF is evaluated by genotype-phenotype studies. The poor correlation between CFTR genotype and severity of lung disease strongly suggests an influence of environmental and secondary genetic factors (CF modifiers). Several candidate genes related to innate and adaptive immune res ...
Chp11
... the digestive system, circulatory system, and endocrine system - each being controlled by many pairs of genes will all impact height. ...
... the digestive system, circulatory system, and endocrine system - each being controlled by many pairs of genes will all impact height. ...
Fundamental Genetics teacher notes Pre-AP 12-13
... 2. Example: In rabbits black coat (B) is dominant over brown (b) and straight hair (H) is dominant to curly (h). Cross a rabbit that is homozygous dominant for both traits with a rabbit that is homozygous dominant for black coat and heterozygous for straight hair. Then give the phenotypic ratio for ...
... 2. Example: In rabbits black coat (B) is dominant over brown (b) and straight hair (H) is dominant to curly (h). Cross a rabbit that is homozygous dominant for both traits with a rabbit that is homozygous dominant for black coat and heterozygous for straight hair. Then give the phenotypic ratio for ...
投影片 1
... Grow quickly (8 hrs to produce protein) Very high yields (50-5000 mg/L) Low cost of media (simple media constituents) Low fermentor costs ...
... Grow quickly (8 hrs to produce protein) Very high yields (50-5000 mg/L) Low cost of media (simple media constituents) Low fermentor costs ...
Gene Expression Atlas
... 1. Start typing ‘androgen’ in the ‘Genes’ search box [A] and select the suggestion 'androgen receptor signaling pathway’ from the drop down menu. 2. Restrict your search to the organism ‘Homo sapiens’ [B]. 3. Type ‘prostate’ in the condition search box [C] and select the suggested EFO term ’prostate ...
... 1. Start typing ‘androgen’ in the ‘Genes’ search box [A] and select the suggestion 'androgen receptor signaling pathway’ from the drop down menu. 2. Restrict your search to the organism ‘Homo sapiens’ [B]. 3. Type ‘prostate’ in the condition search box [C] and select the suggested EFO term ’prostate ...
Branching Problem Set
... gene for vestigial wing (v) us also autosomal and is not linked to black body. In all genes, the wild type is dominant to the mutant. Use BRANCHING to determine the F2 PHENOTYPIC ratios in the cross. . male white eyes black body x female vestigial wing ...
... gene for vestigial wing (v) us also autosomal and is not linked to black body. In all genes, the wild type is dominant to the mutant. Use BRANCHING to determine the F2 PHENOTYPIC ratios in the cross. . male white eyes black body x female vestigial wing ...
video slide
... Concept 18.3: Noncoding RNAs play multiple roles in controlling gene expression Only a small fraction of DNA codes for proteins, rRNA, and tRNA A significant amount of the genome may be transcribed into noncoding RNAs Noncoding RNAs regulate gene expression at two points: mRNA translation and c ...
... Concept 18.3: Noncoding RNAs play multiple roles in controlling gene expression Only a small fraction of DNA codes for proteins, rRNA, and tRNA A significant amount of the genome may be transcribed into noncoding RNAs Noncoding RNAs regulate gene expression at two points: mRNA translation and c ...
Week 8 - GEA
... • The program uses an underlying database (MSigDB) of about 11,000 gene sets that include KEGG, BIOCARTA pathways, curated sets from disease states, etc. ...
... • The program uses an underlying database (MSigDB) of about 11,000 gene sets that include KEGG, BIOCARTA pathways, curated sets from disease states, etc. ...