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The evolution of large DNA viruses: combining genomic information
The evolution of large DNA viruses: combining genomic information

... the evolutionary relationships within many families of DNA viruses have been established [1–3]. Yet, although we have a good understanding of their relatively recent evolution, accurately reconstructing the phylogenetic history of DNA viruses over greater time periods, or their large-scale patterns ...
Study of the arginine repressor in different organisms
Study of the arginine repressor in different organisms

... The arginine repressor (ArgR) regulates transcription of the arginine biosynthetic genes in bacteria. ArgR proteins play a multifunctional role in the bacterial cell. They inhibit biosynthetic promoters and are involved in activation of several catabolic pathways. The arginine repressor of Streptomy ...
Genome-scale profiling of histone H3.3 replacement patterns
Genome-scale profiling of histone H3.3 replacement patterns

... resolution3,15. Both dimethylation at Lys4 of H3 (H3K4me2) and RNA polymerase II (Pol II; using an antibody to the C-terminal domain) had patterns that corresponded closely with those of H3.3 (Fig. 2e,f). We also observed this similarity between H3.3 and markers of active chromatin and transcription ...
Nuclear architecture in plants.
Nuclear architecture in plants.

... Nuclear architecture describes the structure and introduced when positions of telocentric chromosomes pattern of the nucleus. To understand the architecture, paired with normal chromosomes ('marked' bivalents) were analysed in squashes of wheat meiotic prep­ we must know about the three-dimensional ...
Patenting DNA-Related I nventions in the European Union, United
Patenting DNA-Related I nventions in the European Union, United

... industry materials and drugs. A common technique involved in this process is to insert a gene that produces a desired product into bacteria. Bacteria can then be grown in large quantities and processed to extract the desired substance. The same procedure can be performed using cultured plant and ani ...
Gene Section IGH (Immunoglobulin Heavy) Atlas of Genetics and Cytogenetics
Gene Section IGH (Immunoglobulin Heavy) Atlas of Genetics and Cytogenetics

... IGHC genes. Eighty-two to 88 IGHV genes belong to 7 subgroups, whereas 41 pseudogenes, which are too divergent to be assigned to subgroups, have been assigned to 4 clans. Seven non-mapped IGHV genes have been described as insertion/deletion polymorphism but have not yet been precisely located. The m ...
Exercises
Exercises

... Short tutorial on restriction mapping, translation, and BLAST. Many of the following exercises involve copying one sequence from a page in Netscape to another. For these types of exercises, therefore, it is a good idea to use multiple windows of Netscape. To create a new window select File - New Web ...
The Art of Multiple Sequence Alignment in R - decipher
The Art of Multiple Sequence Alignment in R - decipher

... of the same kind. In this case, multiple alignment works by aligning two sequences, merging with another sequence, merging with another set of sequences, and so-forth until all the sequences are aligned. This process is iterated to further refine the alignment. There are other functions that extend ...
Histone Modifications and Cancer
Histone Modifications and Cancer

... Histone acetylation/deacetylation • Acetylation/deacetylation of defined lysine residues of H3, H4, H2A and H2B histones; • Catalyzed by histone acetyltransferase/deacetylase ...
68 Advances in Environmental Biology, 4(1): 68-73, 2010 ISSN 1995-0756
68 Advances in Environmental Biology, 4(1): 68-73, 2010 ISSN 1995-0756

... plants should also have the ability to accumulate essential and nonessential elements from the soil through their root system [11]. The plants that have the ability to absorb heavy metals do so because of the presence of the metallothionein gene in their DNA genome. Metallothionein belongs to a grou ...
Chapter 43: Plant Genomics
Chapter 43: Plant Genomics

... those present in prokaryotes. The DNA in chloroplasts of all land plants has about the same number of genes (~100), and they are present in about the same order (figure 43.5). In contrast to the evolution of the DNA in the plant cell nucleus, chloroplast DNA has evolved at a more conservative pace, ...
computation for chIP-seq and rNA-seq studies
computation for chIP-seq and rNA-seq studies

Comparative Sequence Analysis of a Region on Human
Comparative Sequence Analysis of a Region on Human

... distribution of conserved parts throughout this locus, with distinct BLAST hits at the position for LEU2 exon 1 and exon 2. In addition, there are a number of BLAST hits of various lengths in the first intron and in the beginning of intron 2 of LEU2. DBA identified conserved blocks that cover large ...
ADVANCING JUSTICE THROUGH DNA TECHNOLOGY
ADVANCING JUSTICE THROUGH DNA TECHNOLOGY

A Human Centromere Protein, CENP-B, Has a DNA Binding Domain
A Human Centromere Protein, CENP-B, Has a DNA Binding Domain

PCR detection of the two `Candidatus` liberobacter species
PCR detection of the two `Candidatus` liberobacter species

... We have shown previously that primers OI2c and OI1 were specific for greening liberobacter 16S rDNA amplification as all liberobacters strains could be amplified and no amplification was obtained with E. coli, Xylella fastidiosa and the phytoplasmas of witche’s broom disease of lime and of tomato st ...
Ethical issues raised by genetically modified microorganisms
Ethical issues raised by genetically modified microorganisms

... not only contain transfer genes but also other genes which often allow the bacteria to adapt to an ecological niche (genes encoding numerous resistance mechanisms or allowing the assimilation of nutritional elements, for example). This means that bacteria having acquired a plasmid by conjugation may ...
FISH MAPPING OF 18S-5.8S
FISH MAPPING OF 18S-5.8S

... which probably acts to reduce the mutational load across the active array. The rDNA units that are epigenetically silenced may be less prone to sequence homogenization and are likely to accumulate mutations and eventually be eliminated from the genome. Such may have been the scenario in the case of ...
RNA or DNA Extractions: Where can I get my samples extracted
RNA or DNA Extractions: Where can I get my samples extracted

... During the sort, sort cell directly into your extraction reagent, something like Trizol LS or Qiagen's RLT. When using TriZol, Only Use TriZol LS which is slightly more concentrated than regular regular TriZol. This formula allows lower quantities of reagent to be used relative to the amount of the ...
Genetics ppt 1
Genetics ppt 1

... • Three properties of RNA enable it to function as an enzyme – It can form a three-dimensional structure because of its ability to base pair with itself – Some bases in RNA contain functional groups – RNA may hydrogen-bond with other nucleic acid molecules ...
On the trail of protein sequences
On the trail of protein sequences

... a number of computer aspects and included some newly identified homologies. Unhappily, there was a 6-year delay between submission and publication (Doolittle, 1979), during which time others had come to many of the same conclusions. Some of the predictions of homology made in the article have only r ...
grappa - Department of Computer Science
grappa - Department of Computer Science

... (compared to site substitutions) could make the inference of deep evolution easier, or more accurate. • Our research shows this is true, but accurate analysis of gene order data is computationally very intensive! ...
Phosphate-solubilizing bacteria as inoculants for agriculture
Phosphate-solubilizing bacteria as inoculants for agriculture

... minerals containing calcium carbonates [31]. A substantial number of bacterial species, mostly those associated with the plant rhizosphere, may exert a beneficial effect upon plant growth [17]. This group of bacteria has been termed “plant growth promoting rhizobacteria” or PGPR [28] and, among them ...
Gene targeting by hybridization-hydrolysis process
Gene targeting by hybridization-hydrolysis process

... were observed when targeting larger sets of genes (up to 27 oligonucleotides at a time). For each one of these experiments no significant difference was ever observed when comparing the overall profiles of the complex cDNA populations and their resulting libraries before and after treatment. Figure ...
MF011_fhs_lnt_002b_May11 - MF011 General Biology 2 (May
MF011_fhs_lnt_002b_May11 - MF011 General Biology 2 (May

... Silent mutations have no effect on the amino acid produced by a codon because of redundancy in the genetic code Missense mutations still code for an amino acid, but not necessarily the right amino acid Nonsense mutations change an amino acid codon into a stop codon, nearly always leading to a nonfun ...
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Non-coding DNA

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