Gene ORGANizer: linking genes to the organs they
... shared Gene Ontology (GO) terms, disease associations, expression patterns and biochemical pathways. The strategy adopted by many of these tools, e.g. Human Phenotype Ontology (HPO)(5), DisGeNet (6), PhenGenl (7), PhenomicDB (8) and Organ System Heterogeneity DB (9), is to focus on the phenotypic ef ...
... shared Gene Ontology (GO) terms, disease associations, expression patterns and biochemical pathways. The strategy adopted by many of these tools, e.g. Human Phenotype Ontology (HPO)(5), DisGeNet (6), PhenGenl (7), PhenomicDB (8) and Organ System Heterogeneity DB (9), is to focus on the phenotypic ef ...
Mild dystrophic epidermolysis bullosa
... EB is a group of inherited disorders in which the skin blisters extremely easily. There are four main types of EB. Each is a quite distinct disorder. If you have dystrophic EB then you cannot later develop one of the other forms of EB (simplex, junctional or Kindler syndrome). Dystrophic EB is so ca ...
... EB is a group of inherited disorders in which the skin blisters extremely easily. There are four main types of EB. Each is a quite distinct disorder. If you have dystrophic EB then you cannot later develop one of the other forms of EB (simplex, junctional or Kindler syndrome). Dystrophic EB is so ca ...
Historical Development of the Concept of the Gene
... other hand, we cannot observe transmission without gene function. According to the so-called classical view of the gene, which prevailed during the 1910s and 1930s, all four criteria led to one and the same unit. According to the classical view, the gene was the smallest indivisible unit of transmis ...
... other hand, we cannot observe transmission without gene function. According to the so-called classical view of the gene, which prevailed during the 1910s and 1930s, all four criteria led to one and the same unit. According to the classical view, the gene was the smallest indivisible unit of transmis ...
Variations - Bioinformatics Unit
... • A haplotype is a set of SNPs (on average ~25 kb) found to be statistically associated on a single chromatid and which therefore tend to be inherited together over time. • Haplotyping involves grouping subjects by haplotypes. 25 of 49 ...
... • A haplotype is a set of SNPs (on average ~25 kb) found to be statistically associated on a single chromatid and which therefore tend to be inherited together over time. • Haplotyping involves grouping subjects by haplotypes. 25 of 49 ...
The degenerate Y chromosome – can
... This immense sequencing effort has netted a grand total of 27 different protein-coding genes within the 23-Mb malespecific euchromatic region of the Y (Fig. 1). The number of protein-coding genes is swollen to 158 by the presence of many of them in multiple copies and the inclusion of many transcrip ...
... This immense sequencing effort has netted a grand total of 27 different protein-coding genes within the 23-Mb malespecific euchromatic region of the Y (Fig. 1). The number of protein-coding genes is swollen to 158 by the presence of many of them in multiple copies and the inclusion of many transcrip ...
PDF
... stress (Gasch et al., 2000)). These perturbations do not directly determine an expression level of a specific gene, and thus cannot be modeled as ideal interventions. However, since they have an important effect on the expression level of many genes, their occurrence in a given sample should be indi ...
... stress (Gasch et al., 2000)). These perturbations do not directly determine an expression level of a specific gene, and thus cannot be modeled as ideal interventions. However, since they have an important effect on the expression level of many genes, their occurrence in a given sample should be indi ...
Genome Biology and
... • Limited to the more frequently expressed genes – misses rarely expressed genes ...
... • Limited to the more frequently expressed genes – misses rarely expressed genes ...
T-Cell Receptor (TCR) Gene Rearrangement, PCR
... lymphoma, monitor for treatment response, and/or measure minimal residual disease (MRD). Methodology: By extracting genomic DNA from blood, lymph node, bone marrow, or other tissue types T-cell receptor gamma and/or T-cell receptor beta are amplified by PCR using a multiplex primer method based on t ...
... lymphoma, monitor for treatment response, and/or measure minimal residual disease (MRD). Methodology: By extracting genomic DNA from blood, lymph node, bone marrow, or other tissue types T-cell receptor gamma and/or T-cell receptor beta are amplified by PCR using a multiplex primer method based on t ...
dualKS - Bioconductor
... relative rank of the mean expression of each gene in each class. Alternatively, you may provide your own weight matrix as the argument to weights. This matrix must have one column for each possible value of class, and one row for each gene in eset. Note that for type=’down’ or the down component of ...
... relative rank of the mean expression of each gene in each class. Alternatively, you may provide your own weight matrix as the argument to weights. This matrix must have one column for each possible value of class, and one row for each gene in eset. Note that for type=’down’ or the down component of ...
Chapter 1 Gene targeting, principles,and practice in mammalian cells
... - marker gene may affect other gene expression. - may remove marker gene after targeting to avoid undesirable effects - marker gene removal can be readily accomplished by Cre-loxP system ...
... - marker gene may affect other gene expression. - may remove marker gene after targeting to avoid undesirable effects - marker gene removal can be readily accomplished by Cre-loxP system ...
Gene-Engineered Models for Genetic Manipulation and Functional
... Length: Relatively small promoter sequences may suffice for directing cell-specific expression in transgenic mice.(12) However even when a long promoter is included, it may fail to express the endogenous gene, owing to the distal enhancer element or over-riding control regions, including locus contr ...
... Length: Relatively small promoter sequences may suffice for directing cell-specific expression in transgenic mice.(12) However even when a long promoter is included, it may fail to express the endogenous gene, owing to the distal enhancer element or over-riding control regions, including locus contr ...
The ADAMTS1 Gene Is Associated with Familial Mandibular
... extensive clinical heterogeneity, the genetic bases of types of MP may be different (Xue et al. 2010; Li et al. 2011). There are many genes known to be involved in the process of mandibular development; however, the mechanism of gene regulation leading to mandibular overgrowth is still not clear. Wh ...
... extensive clinical heterogeneity, the genetic bases of types of MP may be different (Xue et al. 2010; Li et al. 2011). There are many genes known to be involved in the process of mandibular development; however, the mechanism of gene regulation leading to mandibular overgrowth is still not clear. Wh ...
Medical and Ethical Implications of Inexpensive Genome
... Early Detection of Abnormal Genes - Cystic Fibrosis is caused by a mutation in the CFTR (cystic fibrosis transmembrane conductance regulator) gene - A single mutated gene causes other diseases such as Huntington’s disease and Duchenne muscular dystrophy, and those genes have already been identified. ...
... Early Detection of Abnormal Genes - Cystic Fibrosis is caused by a mutation in the CFTR (cystic fibrosis transmembrane conductance regulator) gene - A single mutated gene causes other diseases such as Huntington’s disease and Duchenne muscular dystrophy, and those genes have already been identified. ...
Investigation 1: Identify the Transcriptional Unit
... “transcription unit” rather than “gene” because genes also contain regulatory sequences (promoters and both positive and negative regulatory elements) that are not transcribed. In contrast to prokaryotes, where most of the transcript codes for protein in a single open reading frame (no introns!); in ...
... “transcription unit” rather than “gene” because genes also contain regulatory sequences (promoters and both positive and negative regulatory elements) that are not transcribed. In contrast to prokaryotes, where most of the transcript codes for protein in a single open reading frame (no introns!); in ...
Genetic and epigenetic dissection of cis regulatory
... target DNA fragments using antibodies against 5-methyl cytosine. When combined with microarray technology, these two approaches have been used successfully in global DNA methylation profiling [39–42]. The first high-density genomic methylation map for Arabidopsis was recently published using ChIP fo ...
... target DNA fragments using antibodies against 5-methyl cytosine. When combined with microarray technology, these two approaches have been used successfully in global DNA methylation profiling [39–42]. The first high-density genomic methylation map for Arabidopsis was recently published using ChIP fo ...
Biotechnology Laboratory
... additional report on either protein 3D or global gene expression analysis. These assignments should show a more detailed understanding of the subject than those by undergraduates. 3) Clear and Logical Oral Presentation. Graduate students will be expected to clearly and logically present the objectiv ...
... additional report on either protein 3D or global gene expression analysis. These assignments should show a more detailed understanding of the subject than those by undergraduates. 3) Clear and Logical Oral Presentation. Graduate students will be expected to clearly and logically present the objectiv ...
Population Genetics
... Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. ...
... Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. ...
FEMS ML 00 CODH cooF
... the possibility of di¡erent origins of these two functionally related genes. We consider it signi¢cant that the cooS gene contains no AGA/AGG Arg codons, whereas cooF has 84% of the Arg codons in this group, which is characteristic of thermophilic archaea. This suggests two possible scenarios for th ...
... the possibility of di¡erent origins of these two functionally related genes. We consider it signi¢cant that the cooS gene contains no AGA/AGG Arg codons, whereas cooF has 84% of the Arg codons in this group, which is characteristic of thermophilic archaea. This suggests two possible scenarios for th ...
NULL ALLELES OF HUMAN COMPLEMENT C4 Evidence for
... Results and Discussion To identify carriers ofnondeleted AQO and BQO alleles, we determined the C4 gene structure by Southern blot analysis of Taq I-digested DNA (not shown). Four Taq I fragments can be identified with the 5'C4 probe. A 7-kb fragment usually represents a C4A gene at locus I, whereas ...
... Results and Discussion To identify carriers ofnondeleted AQO and BQO alleles, we determined the C4 gene structure by Southern blot analysis of Taq I-digested DNA (not shown). Four Taq I fragments can be identified with the 5'C4 probe. A 7-kb fragment usually represents a C4A gene at locus I, whereas ...
12864_2008_1659_MOESM3_ESM
... branching of New World monkeys, which was followed by the integration of a MER9 LTR element into the C-terminus encoding part of what corresponds to the ORF of the parent gene. A segmental duplication prior to the branching of apes then yielded a second copy. Thereafter, one of the copies was interr ...
... branching of New World monkeys, which was followed by the integration of a MER9 LTR element into the C-terminus encoding part of what corresponds to the ORF of the parent gene. A segmental duplication prior to the branching of apes then yielded a second copy. Thereafter, one of the copies was interr ...
Genetics Exercises PDF
... other proteins that function as “co-activators”. 4) Coactivators recruit RNA polymerase, which binds to the promoter of a gene and initiates transcription. ...
... other proteins that function as “co-activators”. 4) Coactivators recruit RNA polymerase, which binds to the promoter of a gene and initiates transcription. ...
Polygenic inheritance and micro/minisatellites
... Another example of the role of repeats in gene regulation comes from studies of a 14-bp repeat minisatellite located 596 bp 59 to the human insulin gene. In family studies, Bennett et al35 observed that of the Class I minisatellite alleles the most common 814 mobility unit (mu) allele was infrequent ...
... Another example of the role of repeats in gene regulation comes from studies of a 14-bp repeat minisatellite located 596 bp 59 to the human insulin gene. In family studies, Bennett et al35 observed that of the Class I minisatellite alleles the most common 814 mobility unit (mu) allele was infrequent ...