Methods Five 1536-SNP GoldenGate assays (Fig. 1) Three pilot
... Residual SNPs from the three sources for POPA1 and POPA2 were used for POPA3, but additional SNPs were required. Additional SNPs came from three sources: 1) an extended list of 5732 SNPs from SCRI (NR) derived from reanalysis of the amplicon sequence alignments used for POPA1 and POPA2, 2) a new Har ...
... Residual SNPs from the three sources for POPA1 and POPA2 were used for POPA3, but additional SNPs were required. Additional SNPs came from three sources: 1) an extended list of 5732 SNPs from SCRI (NR) derived from reanalysis of the amplicon sequence alignments used for POPA1 and POPA2, 2) a new Har ...
PhytoREF: a reference database of the plastidial 16S
... 2011); (ii) ribosomal DNA of large protist cells (mainly heterotrophs and potentially multinucleated) or metazoans tends to be preferentially PCR-amplified because of the relatively higher copy number of ribosomal genes in these organisms (Zhu et al. 2005; Godhe et al. 2008); (iii) distinction betwe ...
... 2011); (ii) ribosomal DNA of large protist cells (mainly heterotrophs and potentially multinucleated) or metazoans tends to be preferentially PCR-amplified because of the relatively higher copy number of ribosomal genes in these organisms (Zhu et al. 2005; Godhe et al. 2008); (iii) distinction betwe ...
Mary Ann Osley*, Alastair Fleming, and Cheng
... linkage between ubiquitin and the target protein or between individual ubiquitin molecules in the case of polyubiquitylation. The large family of Ubps suggests that, like E3s, Ubps have significant specificity with respect their targets. Moreover, multiple Ubps may act on a single target. For exampl ...
... linkage between ubiquitin and the target protein or between individual ubiquitin molecules in the case of polyubiquitylation. The large family of Ubps suggests that, like E3s, Ubps have significant specificity with respect their targets. Moreover, multiple Ubps may act on a single target. For exampl ...
Concordance trees, concordance factors, and the exploration of
... that involve reticulation at the population level (e.g., introgression, lateral gene transfer). Instead of estimating a population history from the molecular data it seems possible that one might be able to use the sample of gene genealogies represented in a dataset to directly estimate the proporti ...
... that involve reticulation at the population level (e.g., introgression, lateral gene transfer). Instead of estimating a population history from the molecular data it seems possible that one might be able to use the sample of gene genealogies represented in a dataset to directly estimate the proporti ...
slides - DTU CBS
... CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS TECHNICAL UNIVERSITY OF DENMARK DTU ...
... CENTER FOR BIOLOGICAL SEQUENCE ANALYSIS TECHNICAL UNIVERSITY OF DENMARK DTU ...
Genetic interaction of Lhx4 and Prop1
... (Cogan et al., 1998; Mendonca et al., 1999; Wu et al., 1998). The clinical features of patients vary considerably, and they are not explained completely by genotype-phenotypical correlations, suggesting that genetic interactions with variants in other genes may be one cause of heterogeneity (Flück e ...
... (Cogan et al., 1998; Mendonca et al., 1999; Wu et al., 1998). The clinical features of patients vary considerably, and they are not explained completely by genotype-phenotypical correlations, suggesting that genetic interactions with variants in other genes may be one cause of heterogeneity (Flück e ...
Accepted Version - CSIRO Research Publications Repository
... shows there is ectopic local DNA hyper-methylation of a specific locus in the global DNA hypo-methylation mutant, ddm1. Although small RNAs corresponding to the BNS locus accumulate in the ddm1 mutant, ectopic induction of de novo DNA methylation at the BNS locus in the ddm1 background was independe ...
... shows there is ectopic local DNA hyper-methylation of a specific locus in the global DNA hypo-methylation mutant, ddm1. Although small RNAs corresponding to the BNS locus accumulate in the ddm1 mutant, ectopic induction of de novo DNA methylation at the BNS locus in the ddm1 background was independe ...
File - Mr. Shanks` Class
... AUG met f. all proteins must start with met as AUG is the start code; this ...
... AUG met f. all proteins must start with met as AUG is the start code; this ...
Genetic interaction of Lhx4 and Prop1 - Development
... (Cogan et al., 1998; Mendonca et al., 1999; Wu et al., 1998). The clinical features of patients vary considerably, and they are not explained completely by genotype-phenotypical correlations, suggesting that genetic interactions with variants in other genes may be one cause of heterogeneity (Flück e ...
... (Cogan et al., 1998; Mendonca et al., 1999; Wu et al., 1998). The clinical features of patients vary considerably, and they are not explained completely by genotype-phenotypical correlations, suggesting that genetic interactions with variants in other genes may be one cause of heterogeneity (Flück e ...
View PDF - BloodMed
... appeared to be alleles of Hb S, in 1958 Smith and Torbert, research fellows working at Johns Hopkins Hospital in Lockard Conley's Department, discovered a family in which two haemoglobin variants, Hbs Hopkins 2 and S, segregated independently. Shortly afterwards, in a series of ingenious dissociatio ...
... appeared to be alleles of Hb S, in 1958 Smith and Torbert, research fellows working at Johns Hopkins Hospital in Lockard Conley's Department, discovered a family in which two haemoglobin variants, Hbs Hopkins 2 and S, segregated independently. Shortly afterwards, in a series of ingenious dissociatio ...
Gene Section EVI1 (ecotropic viral integration site 1 (EVI1) and
... MDS1-EVI1 contains a PR domain, which is about 40% homologous to the N-terminus of the retinoblastoma-binding protein, RIZ, and the PRDIBF1 transcription factor. Some biological functions of MDS1/EVI1 are different from, or even antagonistic to, those of EVI1. ...
... MDS1-EVI1 contains a PR domain, which is about 40% homologous to the N-terminus of the retinoblastoma-binding protein, RIZ, and the PRDIBF1 transcription factor. Some biological functions of MDS1/EVI1 are different from, or even antagonistic to, those of EVI1. ...
Transcript
... [DOEBLEY:] So Neil, the reason I wanted to bring you out here was to show you just how different corn and teosinte are. [LOSIN:] Yeah. [DOEBLEY:] This is a teosinte plant, and it doesn’t look anything like a typical corn plant. [LOSIN:] No. [DOEBLEY:] You can start by just looking at the base, it j ...
... [DOEBLEY:] So Neil, the reason I wanted to bring you out here was to show you just how different corn and teosinte are. [LOSIN:] Yeah. [DOEBLEY:] This is a teosinte plant, and it doesn’t look anything like a typical corn plant. [LOSIN:] No. [DOEBLEY:] You can start by just looking at the base, it j ...
A legume genomics resource: The Chickpea Root Expressed
... may be associated with root development and abiotic stress tolerance in chickpea. We have isolated EST with putative relationships to signal transduction and transcriptional factors, proteases and lipid transfer proteins, transporters and heat-shock proteins, and, an enzyme involved in the synthesis ...
... may be associated with root development and abiotic stress tolerance in chickpea. We have isolated EST with putative relationships to signal transduction and transcriptional factors, proteases and lipid transfer proteins, transporters and heat-shock proteins, and, an enzyme involved in the synthesis ...
Minimum SNPs version 2043 user manual
... “The original MLST web software was developed by Man-Suen Chan (Oxford University) and this version has been developed by David Aanensen (Imperial College) who is funded by The Wellcome Trust Multilocus sequence typing (MLST) is an unambiguous procedure for characterising isolates of bacterial speci ...
... “The original MLST web software was developed by Man-Suen Chan (Oxford University) and this version has been developed by David Aanensen (Imperial College) who is funded by The Wellcome Trust Multilocus sequence typing (MLST) is an unambiguous procedure for characterising isolates of bacterial speci ...
Bioinformatics with basic local alignment search tool (BLAST) and
... along which many k-tuples match. It then re-scores the highest scoring regions with the aid of a replacement matrix (a matrix that shows the rate at which a particular character in a sequence changes to other character states over time) such as the PAM250. After this, it attempts to join together th ...
... along which many k-tuples match. It then re-scores the highest scoring regions with the aid of a replacement matrix (a matrix that shows the rate at which a particular character in a sequence changes to other character states over time) such as the PAM250. After this, it attempts to join together th ...
Cloning, Sequencing, and Characterization of Luciola italica
... from the firefly lanterns. The L. italica luciferase cDNA was successfully cloned by RT-PCR using a genespecific primer set based on the DNA sequence of the Eastern European Luciola mingrelica luciferase gene. The L. italica cDNA was determined to be 1647 base pairs in length with an open reading fr ...
... from the firefly lanterns. The L. italica luciferase cDNA was successfully cloned by RT-PCR using a genespecific primer set based on the DNA sequence of the Eastern European Luciola mingrelica luciferase gene. The L. italica cDNA was determined to be 1647 base pairs in length with an open reading fr ...
Genetic control of broad-spectrum resistance to turnip mosaic virus
... host functions that are involved in the virus life cycle. It has been shown that the pvr2 locus in pepper, which confers recessive resistance against the potyviruses potato virus Y and tobacco etch virus (TEV), corresponds to the eukaryotic initiation factor 4E gene (eIF4E) (Ruffel et al., 2002). Si ...
... host functions that are involved in the virus life cycle. It has been shown that the pvr2 locus in pepper, which confers recessive resistance against the potyviruses potato virus Y and tobacco etch virus (TEV), corresponds to the eukaryotic initiation factor 4E gene (eIF4E) (Ruffel et al., 2002). Si ...
Streptococcus pneumoniae Senses a Human-like Sialic Acid
... to Sia after normalization to glucose treatment compared with treatment without monosaccharide (Figures S2A and S2B). S. pneumoniae Senses Sialic Acid In Vivo in the Nasopharynx of Mice To study whether Sia sensing also occurs in vivo, we isolated pneumococci from the nasopharynx of mice 6 hr p.i., ...
... to Sia after normalization to glucose treatment compared with treatment without monosaccharide (Figures S2A and S2B). S. pneumoniae Senses Sialic Acid In Vivo in the Nasopharynx of Mice To study whether Sia sensing also occurs in vivo, we isolated pneumococci from the nasopharynx of mice 6 hr p.i., ...
Conserved syntenic clusters of protein coding genes are missing in
... orthologs in humans. Of these, only 10,554 also have 1to-1 orthologs in chicken and/or zebra finch, thus revealing a total of 1,559 genes that are potential candidates for missing genes in birds (Table 1A). We next aligned side by side the entire set of 1-to-1 orthologs between humans and lizards ba ...
... orthologs in humans. Of these, only 10,554 also have 1to-1 orthologs in chicken and/or zebra finch, thus revealing a total of 1,559 genes that are potential candidates for missing genes in birds (Table 1A). We next aligned side by side the entire set of 1-to-1 orthologs between humans and lizards ba ...
North America
... • As soon as possible after symptoms begin • before antiviral medications are administered • Even if symptoms began more than one week ago and antivirals administered but record both the time from symptom onset and the type and dosage of antivirals treatment • Multiple specimens on multiple days cou ...
... • As soon as possible after symptoms begin • before antiviral medications are administered • Even if symptoms began more than one week ago and antivirals administered but record both the time from symptom onset and the type and dosage of antivirals treatment • Multiple specimens on multiple days cou ...
A viability-linked metagenomic analysis of
... facility. The facility that was examined housed an uncontrolled gowning area and a Class 100K (ISO-8) cleanroom environment. In total, the metagenomes of 12 samples were comparatively analyzed. Three samples were collected from gowning area and three samples were collected from the cleanroom. Each o ...
... facility. The facility that was examined housed an uncontrolled gowning area and a Class 100K (ISO-8) cleanroom environment. In total, the metagenomes of 12 samples were comparatively analyzed. Three samples were collected from gowning area and three samples were collected from the cleanroom. Each o ...
Engineering of steroid biotransformation in rhodococcus van
... SQ1, encoding the enzymes involved in AD degradation. The genomic loci of these genes appear to be scattered over the genome of R. erythropolis SQ1. No operon (-like) organization was apparent and therefore all four genes needed to be cloned individually. As an exception, a divergently transcribed T ...
... SQ1, encoding the enzymes involved in AD degradation. The genomic loci of these genes appear to be scattered over the genome of R. erythropolis SQ1. No operon (-like) organization was apparent and therefore all four genes needed to be cloned individually. As an exception, a divergently transcribed T ...
Case-Parent Triads
... allele distribution that can occur among affected offspring and their parents. The transmission/disequilibrium test and related methods for analysis of case-parent triads are useful for many diseases, but they have an inherent limitation for the study of diseases that originate during fetal life. Th ...
... allele distribution that can occur among affected offspring and their parents. The transmission/disequilibrium test and related methods for analysis of case-parent triads are useful for many diseases, but they have an inherent limitation for the study of diseases that originate during fetal life. Th ...
RNA-Seq
RNA-seq (RNA sequencing), also called whole transcriptome shotgun sequencing (WTSS), is a technology that uses the capabilities of next-generation sequencing to reveal a snapshot of RNA presence and quantity from a genome at a given moment in time.