Molecular indexing for improved RNA-Seq analysis
... RPKM values in all applications. As sequencing depth increases, individual molecular resolution also increases. In quantitative RNASeq experiments, the molecular indices distinguish re-sampling of the same molecule from sampling of a different molecule2-6. At high sequencing depths, each molecule ca ...
... RPKM values in all applications. As sequencing depth increases, individual molecular resolution also increases. In quantitative RNASeq experiments, the molecular indices distinguish re-sampling of the same molecule from sampling of a different molecule2-6. At high sequencing depths, each molecule ca ...
Lec 15: Nitrogen in biochemistry
... Mo‐dependent Nitrogenase • Nitrogenases are multi‐subunit polypeptide complex coded by the nif genes • The most studied type of nitrogenase is Mo‐dependent nitrogenase • Other types of nitrogenases include Vanadium and iron only • Different nitrogenases produce different levels of byproduct H2. • M ...
... Mo‐dependent Nitrogenase • Nitrogenases are multi‐subunit polypeptide complex coded by the nif genes • The most studied type of nitrogenase is Mo‐dependent nitrogenase • Other types of nitrogenases include Vanadium and iron only • Different nitrogenases produce different levels of byproduct H2. • M ...
Modeling the effect of cytoplasm sol-gel transitions on magnetization
... f . In this section we will explore the Model 1 for several frequency values and fixed weight: w 5 . Fig. 3 shows the behaviour of the magnetization in the intracellular compartment for the two gradient directions, when varying b, for both models. In the case of Model 1 two frequency values, 40 an ...
... f . In this section we will explore the Model 1 for several frequency values and fixed weight: w 5 . Fig. 3 shows the behaviour of the magnetization in the intracellular compartment for the two gradient directions, when varying b, for both models. In the case of Model 1 two frequency values, 40 an ...
Finding Patterns in Protein Sequence and Structure
... Evaluation problem can be used for isolated (word) recognition. Decoding problem is related to the continuous recognition as well as to the segmentation. Learning problem must be solved, if we want to train an HMM for the subsequent use of recognition tasks. ...
... Evaluation problem can be used for isolated (word) recognition. Decoding problem is related to the continuous recognition as well as to the segmentation. Learning problem must be solved, if we want to train an HMM for the subsequent use of recognition tasks. ...
1 APPENDIX 1 TEST PRINCIPLES USED IN THE BIOCHEMICAL
... oxidation to dihydroxyacetone phosphate and hydrogen peroxide. The hydrogen oxide produced then reacts with 4-aminophenazone and 4-4-chlorophenol under the catalytic action of peroxidase to form a red dyestuff (Trinder end point reaction). Total Protein Plasma proteins are synthesized predominantly ...
... oxidation to dihydroxyacetone phosphate and hydrogen peroxide. The hydrogen oxide produced then reacts with 4-aminophenazone and 4-4-chlorophenol under the catalytic action of peroxidase to form a red dyestuff (Trinder end point reaction). Total Protein Plasma proteins are synthesized predominantly ...
SIMULATION OF PROKARYOTIC GENETIC CIRCUITS
... being either integrated or not integrated into the host DNA acts as a memory element (61). In higher organisms, successive cellular state changes during organ differentiation are largely irreversible. The self-sustaining, continuous expression of the homeotic genes throughout development and into ad ...
... being either integrated or not integrated into the host DNA acts as a memory element (61). In higher organisms, successive cellular state changes during organ differentiation are largely irreversible. The self-sustaining, continuous expression of the homeotic genes throughout development and into ad ...
Document
... the anions and cations are separated from each other. This is called dissociation. – However, not all ionic compounds are soluble in water! • When compounds containing polyatomic ions dissociate, the polyatomic group stays together as one ion. • When molecular compounds dissolve in water, the only o ...
... the anions and cations are separated from each other. This is called dissociation. – However, not all ionic compounds are soluble in water! • When compounds containing polyatomic ions dissociate, the polyatomic group stays together as one ion. • When molecular compounds dissolve in water, the only o ...
Syllabus of the International Chemistry Olympiad
... reflect the relevance of modern chemistry and which receive current interest. Of course, problems concerning the understanding of chemistry in qualitative and quantitative terms are included as well. While working on the problems students will encounter, for example, the chemistry of lactose, which ...
... reflect the relevance of modern chemistry and which receive current interest. Of course, problems concerning the understanding of chemistry in qualitative and quantitative terms are included as well. While working on the problems students will encounter, for example, the chemistry of lactose, which ...
Name: Period:______ Let`s make some sandwiches! Introduction: If
... Name:______________________ Period:_________ Let’s make some sandwiches! Introduction: If a sandwich shop runs out of bread, the shop closes down. No more sandwiches can be fully made without ordering more bread from a bakery. A similar thing happens in a chemical reaction. If there are fixed amount ...
... Name:______________________ Period:_________ Let’s make some sandwiches! Introduction: If a sandwich shop runs out of bread, the shop closes down. No more sandwiches can be fully made without ordering more bread from a bakery. A similar thing happens in a chemical reaction. If there are fixed amount ...
advanced computational methods for the investigation of biophysical
... - ad hoc computational methods have been developed specifically to interpret the experimental data. The theoretical assumptions of the computational methods used are based on the theory of dynamic evolution of complex systems and on the properties originating from their selforganization capacity. Th ...
... - ad hoc computational methods have been developed specifically to interpret the experimental data. The theoretical assumptions of the computational methods used are based on the theory of dynamic evolution of complex systems and on the properties originating from their selforganization capacity. Th ...
Questions 1-2
... For each of the following three reactions, write a balanced equation in part (1) and answer the question in part (2). In part (1), coefficients should be in terms of lowest whole numbers. Assume that solutions are aqueous unless otherwise indicated. Represent substances in solutions as ions if the s ...
... For each of the following three reactions, write a balanced equation in part (1) and answer the question in part (2). In part (1), coefficients should be in terms of lowest whole numbers. Assume that solutions are aqueous unless otherwise indicated. Represent substances in solutions as ions if the s ...
2012 C13 Exam answers
... Ka = 1.8×10 at 298 K. A solution is prepared by dissolving 0.010 moles of HCOOH in water to make 1.0 L of solution at 298 K. Which of the following actions, considered independently, causes an increase in both the pH of the solution and the percentage ionization of HCOOH? (i) diluting with water to ...
... Ka = 1.8×10 at 298 K. A solution is prepared by dissolving 0.010 moles of HCOOH in water to make 1.0 L of solution at 298 K. Which of the following actions, considered independently, causes an increase in both the pH of the solution and the percentage ionization of HCOOH? (i) diluting with water to ...
View document as PDF
... Teaching Points When proteins fold into their tertiary structures, there are often subdivisions within the protein, designated as domains, which are characterized by shape (motif) and/or function. One such motif is the zinc finger, in which a specific domain of the protein is arranged into a “finger ...
... Teaching Points When proteins fold into their tertiary structures, there are often subdivisions within the protein, designated as domains, which are characterized by shape (motif) and/or function. One such motif is the zinc finger, in which a specific domain of the protein is arranged into a “finger ...
Chapter 4: Aqueous Reactions and Solution
... You will be expected to be able to write complete (molecular) and net ionic chemical equations. This will require you to be disciplined, committing yourself to memorizing certain information and doing much practice. To be successful you must develop the ability to recognize an acid, a base and an io ...
... You will be expected to be able to write complete (molecular) and net ionic chemical equations. This will require you to be disciplined, committing yourself to memorizing certain information and doing much practice. To be successful you must develop the ability to recognize an acid, a base and an io ...
Spring 2002 - Kwantlen Polytechnic University
... a. The solution obey’s Raoult’s Law. b. The solution shows a positive deviation from Raoult’s Law. c. The solution shows a negative deviation from Raoult’s Law and possesses a minimum boiling point azeotrope. d. The solution shows a negative deviation from Raoult’s Law and possesses a maximum boilin ...
... a. The solution obey’s Raoult’s Law. b. The solution shows a positive deviation from Raoult’s Law. c. The solution shows a negative deviation from Raoult’s Law and possesses a minimum boiling point azeotrope. d. The solution shows a negative deviation from Raoult’s Law and possesses a maximum boilin ...
The cytoplasm of living cells: a functional mixture of thousands of
... in the environment, then there is natural selection pressure on the proteins to evolve to diffuse faster. Section 3 will discuss how we can understand and even calculate some aspects of the phase behaviour of models of the cytoplasm, even in the absence of hard data on even one of the millions of in ...
... in the environment, then there is natural selection pressure on the proteins to evolve to diffuse faster. Section 3 will discuss how we can understand and even calculate some aspects of the phase behaviour of models of the cytoplasm, even in the absence of hard data on even one of the millions of in ...
Entropy in Biology -R-ES-O-N-A-N-C-E--I-s-e-p-te-m-b-e-r--2-0-0
... Although life is driven by spontaneous reactions, it is only by the intervention of large, very elaborately structured molecules in cells, usually proteins called enzymes, that the rates of these reactions are brought into biologically relevant time scales. Entropy plays a big role in enzyme catalys ...
... Although life is driven by spontaneous reactions, it is only by the intervention of large, very elaborately structured molecules in cells, usually proteins called enzymes, that the rates of these reactions are brought into biologically relevant time scales. Entropy plays a big role in enzyme catalys ...
CHEM 30 REDOX
... Br-(aq) ions in an acidic solution were oxidized to Br2(l) by a 0.0200 M KMnO4(aq) solution. The volume of Br-(aq) solution was 25.0 mL and the volume of KMnO4(aq) was 15.0 mL. Calculate the concentration of Br-(aq) ions in solution. ...
... Br-(aq) ions in an acidic solution were oxidized to Br2(l) by a 0.0200 M KMnO4(aq) solution. The volume of Br-(aq) solution was 25.0 mL and the volume of KMnO4(aq) was 15.0 mL. Calculate the concentration of Br-(aq) ions in solution. ...
Evolution of Enzymatic Activity in the Enolase Superfamily
... That the OSBS reaction is efficiently catalyzed by active sites in highly divergent sequence contexts suggests that some OSBSs may be functionally promiscuous, that is, they catalyze another reaction as well as the OSBS reaction (10). Perhaps the extreme sequence divergence results from convergent e ...
... That the OSBS reaction is efficiently catalyzed by active sites in highly divergent sequence contexts suggests that some OSBSs may be functionally promiscuous, that is, they catalyze another reaction as well as the OSBS reaction (10). Perhaps the extreme sequence divergence results from convergent e ...
Document
... • Phosphorylation is the addition of a phosphate (PO4) group to a protein or other organic molecule. • kinases (phosphorylation) and phosphatases (dephosphorylation) are involved in this process. Many enzymes and receptors are switched "on" or "off" by phosphorylation and dephosphorylation. • Revers ...
... • Phosphorylation is the addition of a phosphate (PO4) group to a protein or other organic molecule. • kinases (phosphorylation) and phosphatases (dephosphorylation) are involved in this process. Many enzymes and receptors are switched "on" or "off" by phosphorylation and dephosphorylation. • Revers ...
Some factors affecting polyphenol oxidase activity
... the enzyme to "mold" itself over the substrate. ...
... the enzyme to "mold" itself over the substrate. ...
The aim of this unit
... produced by precipitation will be described and the importance of controlling the various experimental conditions during precipitation, drying, etc., will be discussed. Impregnation methods will be considered in some detail, as will the role of adsorption and ion exchange in determining the distribu ...
... produced by precipitation will be described and the importance of controlling the various experimental conditions during precipitation, drying, etc., will be discussed. Impregnation methods will be considered in some detail, as will the role of adsorption and ion exchange in determining the distribu ...