GenIRL Genomic Information Retrieval using links
... and different types of data. As biologists identify new genes and gene functions every day, new sequences are stored and new literature is published at an increasing speed. The size of nucleotide sequences databases such as GenBank is growing larger as well as the size of protein sequences, protein ...
... and different types of data. As biologists identify new genes and gene functions every day, new sequences are stored and new literature is published at an increasing speed. The size of nucleotide sequences databases such as GenBank is growing larger as well as the size of protein sequences, protein ...
Extracting and Explaining Biological Knowledge in Microarray Data
... datasets into new forms that reveal their structure more clearly. Two different techniques are used: singular value decomposition (SVD) and semidiscrete decomposition (SDD). The output of this stage is interesting from a statistical point of view (an example of visualised clusters is shown in Fig. 2 ...
... datasets into new forms that reveal their structure more clearly. Two different techniques are used: singular value decomposition (SVD) and semidiscrete decomposition (SDD). The output of this stage is interesting from a statistical point of view (an example of visualised clusters is shown in Fig. 2 ...
No Slide Title
... Conserved Domain Database, a collection of sequence alignments and profiles representing protein domains conserved in molecular evolution. Select 'Domains' from the Entrez pull down menu. ...
... Conserved Domain Database, a collection of sequence alignments and profiles representing protein domains conserved in molecular evolution. Select 'Domains' from the Entrez pull down menu. ...
polymerase chain reaction (pcr)
... •Calculated Tm (temperature at which 50% of the primer molecules are annealed to the DNA template) for both primers used in reaction should not differ >5C and Tm of the amplification product should not differ from primers by >10C. To calculate the Tm for both primers the formula used depends on th ...
... •Calculated Tm (temperature at which 50% of the primer molecules are annealed to the DNA template) for both primers used in reaction should not differ >5C and Tm of the amplification product should not differ from primers by >10C. To calculate the Tm for both primers the formula used depends on th ...
Computing Co-Expression Relationships
... – About 800 genes differentially displayed at least one time point. – Based on array data of 300 ATH1 slides extracted from RMA array data of about 2600 ATH1 slides downloaded from the NASCarrays • Threshold for pearson correlation coefficient = 0.8 ...
... – About 800 genes differentially displayed at least one time point. – Based on array data of 300 ATH1 slides extracted from RMA array data of about 2600 ATH1 slides downloaded from the NASCarrays • Threshold for pearson correlation coefficient = 0.8 ...
Genetic diversity and phylogenetic classification of viral hemorrhagic
... transmembranaire (G), d’isolats séquentiels du VHSV, provenant d’Europe ou des États-Unis, ont été déterminées et utilisées pour calculer des arbres phylogénétiques. Sur la base du pourcentage de similitude des séquences, les souches américaines et européennes se classent en 2 groupes génétiques cla ...
... transmembranaire (G), d’isolats séquentiels du VHSV, provenant d’Europe ou des États-Unis, ont été déterminées et utilisées pour calculer des arbres phylogénétiques. Sur la base du pourcentage de similitude des séquences, les souches américaines et européennes se classent en 2 groupes génétiques cla ...
1 This document outlines the learning objectives (what students will
... 1. Describe in your own worlds the genetic code and explain how it relates to the central dogma 2. Explain how the auxotrophic mutants isolated by Beadle and Tatum support the one gene-one polypeptide hypothesis 3. Describe template and coding strands and relate how genes are organized on both DNA s ...
... 1. Describe in your own worlds the genetic code and explain how it relates to the central dogma 2. Explain how the auxotrophic mutants isolated by Beadle and Tatum support the one gene-one polypeptide hypothesis 3. Describe template and coding strands and relate how genes are organized on both DNA s ...
printer-friendly version
... Students know how to predict patterns of inheritance. E/S A gene is the unit of heredity in living organisms. Genes are encoded in an organism's genome, composed of DNA or RNA, and direct the physical development and behavior of the organism. Multiple versions can exist for each gene. Different form ...
... Students know how to predict patterns of inheritance. E/S A gene is the unit of heredity in living organisms. Genes are encoded in an organism's genome, composed of DNA or RNA, and direct the physical development and behavior of the organism. Multiple versions can exist for each gene. Different form ...
A review of ocular genetics and inherited eye diseases
... of unaffected individuals are not affected. Males and females are equally likely to be affected. Most autosomal dominant traits involve structural defects. The term “recessive” means hidden20. In other words, an individual can carry a single copy of a defective gene without showing any clinical sign ...
... of unaffected individuals are not affected. Males and females are equally likely to be affected. Most autosomal dominant traits involve structural defects. The term “recessive” means hidden20. In other words, an individual can carry a single copy of a defective gene without showing any clinical sign ...
dragon genetics lab - Aurora Public Schools
... classroom. The lab must be completed on time. 2. Each partner must pick up five Popsicle sticks -- one of each color of autosome, and one sex chromosome stick. Each side of a stick represents a chromosome, and the two sides together represent a pair of homologous chromosomes. 3. For each color autos ...
... classroom. The lab must be completed on time. 2. Each partner must pick up five Popsicle sticks -- one of each color of autosome, and one sex chromosome stick. Each side of a stick represents a chromosome, and the two sides together represent a pair of homologous chromosomes. 3. For each color autos ...
Document
... Summer squash can be found in three shapes: disk, spherical, and elongate. In one experiment, two squash plants with diskshaped fruits were crossed. The first 160 seeds planted from this cross produced plants with fruit shapes as follows: 89 disk, 61 sphere, and 10 elongate. What is the mode of inh ...
... Summer squash can be found in three shapes: disk, spherical, and elongate. In one experiment, two squash plants with diskshaped fruits were crossed. The first 160 seeds planted from this cross produced plants with fruit shapes as follows: 89 disk, 61 sphere, and 10 elongate. What is the mode of inh ...
Sample Exam 3 answer key
... Plant B: Two independent insertions of the T-DNA occurred on different chromosomes. Therefore the two T-DNA insertions are unlinked. When plant B is selfed, the two loci will segregate 9:3:3:1, with 15 individuals that are kanamycin resistant and 1 individual out of 16 that is kanamycin sensistive. ...
... Plant B: Two independent insertions of the T-DNA occurred on different chromosomes. Therefore the two T-DNA insertions are unlinked. When plant B is selfed, the two loci will segregate 9:3:3:1, with 15 individuals that are kanamycin resistant and 1 individual out of 16 that is kanamycin sensistive. ...
RNA Tertiary Structure
... the 3' untranslated region of their target mRNAs, preventing functional proteins from being produced during certain stages of larval development. • Additional studies indicate that miRNAs also play significant roles in cancer and other diseases. For example, the species miR-155 is enriched in B cell ...
... the 3' untranslated region of their target mRNAs, preventing functional proteins from being produced during certain stages of larval development. • Additional studies indicate that miRNAs also play significant roles in cancer and other diseases. For example, the species miR-155 is enriched in B cell ...
Protein Synthesis Card Sort
... attaches to the unzipped DNA and reads the A, T, G, C (Nitrogen base pairs) code. ...
... attaches to the unzipped DNA and reads the A, T, G, C (Nitrogen base pairs) code. ...
paper by Acquisti, Elser and Kumar
... N-content is an order of magnitude higher in transcriptomes than in genomes. This disparity reflects differences in the overall contribution of RNA and DNA to cellular biomass: DNA generally contributes less than 2% to overall organismal biomass, whereas RNA can constitute up to 15% of the biomass i ...
... N-content is an order of magnitude higher in transcriptomes than in genomes. This disparity reflects differences in the overall contribution of RNA and DNA to cellular biomass: DNA generally contributes less than 2% to overall organismal biomass, whereas RNA can constitute up to 15% of the biomass i ...
Free Full Text ( Final Version , 673kb )
... where clustering is probably meaningful because more than two independent markers (not in a strong LD; Fig. 5, which is published as supporting information on the PNAS web site, www.pnas.org) exceed the nominal 1% level, and they are relatively close. Using haplotypes instead of individual markers f ...
... where clustering is probably meaningful because more than two independent markers (not in a strong LD; Fig. 5, which is published as supporting information on the PNAS web site, www.pnas.org) exceed the nominal 1% level, and they are relatively close. Using haplotypes instead of individual markers f ...
What is your DNA Alias - mychandlerschools.org
... Cytosine, and Guanine, respectively. The letters are read in groups of three by various enzymes and organelles in your cells. A group of three is called a codon. DNA contains the information that is needed by your body to make proteins. The different proteins have specific functions, such as making ...
... Cytosine, and Guanine, respectively. The letters are read in groups of three by various enzymes and organelles in your cells. A group of three is called a codon. DNA contains the information that is needed by your body to make proteins. The different proteins have specific functions, such as making ...
Quiz 9 BIol203 Fall 2013ppt
... Circle the portion of the above gene that you would use to make a transgene that expresses Arl in the leg only. 4pts. Mark with a bracket the portion of the above gene that you would use to make a transgene that expresses Arl in the antenna. 4pts. You want to insert a minimal promoter-Gal4pA transge ...
... Circle the portion of the above gene that you would use to make a transgene that expresses Arl in the leg only. 4pts. Mark with a bracket the portion of the above gene that you would use to make a transgene that expresses Arl in the antenna. 4pts. You want to insert a minimal promoter-Gal4pA transge ...
RNA
... Define retrograde regulation and describe the nature of retrograde signaling molecules Describe the nature and functions of plant pentatricopeptide repeat (PPR) proteins Discuss the reasons that PPR proteins are wellsuited to be a central player in multiple organelle ...
... Define retrograde regulation and describe the nature of retrograde signaling molecules Describe the nature and functions of plant pentatricopeptide repeat (PPR) proteins Discuss the reasons that PPR proteins are wellsuited to be a central player in multiple organelle ...
Mendel's Laws of Heredity - West-MEC
... Meiosis :The cell division that produces sex cells. Mutation : A change in the type or order of the bases in an organism DNA: deletion, insertion or substitution. Natural Selection : The process by which organisms with favorable traits survive and reproduce at a higher rate than organisms with ...
... Meiosis :The cell division that produces sex cells. Mutation : A change in the type or order of the bases in an organism DNA: deletion, insertion or substitution. Natural Selection : The process by which organisms with favorable traits survive and reproduce at a higher rate than organisms with ...
Genetic Technology - Mr. Swords' Classes
... • The most productive and useful plants and animals can be cloned to help humans. • The drawback is using older DNA because it will have accumulated damage over the years. The clone will likely show signs of age early. ...
... • The most productive and useful plants and animals can be cloned to help humans. • The drawback is using older DNA because it will have accumulated damage over the years. The clone will likely show signs of age early. ...
Nerve activates contraction
... • Several researchers proposed in the early 1900s that genes are located on chromosomes • The behavior of chromosomes during meiosis was said to account for Mendel’s laws of segregation and independent ...
... • Several researchers proposed in the early 1900s that genes are located on chromosomes • The behavior of chromosomes during meiosis was said to account for Mendel’s laws of segregation and independent ...
Results
... transcription factor that binds to the sequence between two genes [16]. Second, Garten et al. used the cumulative hyper-geometric test to estimate the significance of the overlap of two TF sets [17]. Third, Veerla and Höglund used the Jaccard index to determine the regulatory similarity of two genes ...
... transcription factor that binds to the sequence between two genes [16]. Second, Garten et al. used the cumulative hyper-geometric test to estimate the significance of the overlap of two TF sets [17]. Third, Veerla and Höglund used the Jaccard index to determine the regulatory similarity of two genes ...
Gene
A gene is a locus (or region) of DNA that encodes a functional RNA or protein product, and is the molecular unit of heredity. The transmission of genes to an organism's offspring is the basis of the inheritance of phenotypic traits. Most biological traits are under the influence of polygenes (many different genes) as well as the gene–environment interactions. Some genetic traits are instantly visible, such as eye colour or number of limbs, and some are not, such as blood type, risk for specific diseases, or the thousands of basic biochemical processes that comprise life.Genes can acquire mutations in their sequence, leading to different variants, known as alleles, in the population. These alleles encode slightly different versions of a protein, which cause different phenotype traits. Colloquial usage of the term ""having a gene"" (e.g., ""good genes,"" ""hair colour gene"") typically refers to having a different allele of the gene. Genes evolve due to natural selection or survival of the fittest of the alleles.The concept of a gene continues to be refined as new phenomena are discovered. For example, regulatory regions of a gene can be far removed from its coding regions, and coding regions can be split into several exons. Some viruses store their genome in RNA instead of DNA and some gene products are functional non-coding RNAs. Therefore, a broad, modern working definition of a gene is any discrete locus of heritable, genomic sequence which affect an organism's traits by being expressed as a functional product or by regulation of gene expression.