Eukaryotically Encoded and Chloroplast
... BBYs, which are enriched in photosystem II but nearly free of photosystem I components (20). Depletion of light-harvesting complex II from the BBYs using detergents led to OG cores (21) and light-harvesting complex II-free DM cores. The latter resembled the purified PSII core complex (14). These par ...
... BBYs, which are enriched in photosystem II but nearly free of photosystem I components (20). Depletion of light-harvesting complex II from the BBYs using detergents led to OG cores (21) and light-harvesting complex II-free DM cores. The latter resembled the purified PSII core complex (14). These par ...
anatomy of a feed tag - Westway Feed Products
... be listed in order of amount used in the formula. This is true in pet food and human food labeling, but not in livestock feeds. It is customary to list ingredients in that order, but it isn't required. Collective Terms allows grouping ingredients derived from similar sources under one name. This let ...
... be listed in order of amount used in the formula. This is true in pet food and human food labeling, but not in livestock feeds. It is customary to list ingredients in that order, but it isn't required. Collective Terms allows grouping ingredients derived from similar sources under one name. This let ...
Poly(Pro)II Helices in Globular Proteins: Identification and Circular
... arranged as in one turn of a PIIhelix, which has implications for exciton interactions and the resulting C D spectra. However, whether isolated residues assigned to the PIIstructure need to be considered as PIIor left unassigned is not clear. A single residue in the PIIconformation cannot be conside ...
... arranged as in one turn of a PIIhelix, which has implications for exciton interactions and the resulting C D spectra. However, whether isolated residues assigned to the PIIstructure need to be considered as PIIor left unassigned is not clear. A single residue in the PIIconformation cannot be conside ...
Computational and genetic evidence that different structural
... Tanaka et al., 2003). In each case, the three CESA isoforms are integrated into a cellulose synthesis complex (CSC) that moves in the plane of the plasma membrane as cellulose fibrils are formed (Paredez et al., 2006; Endler and Persson, 2011). Although no plant CESA has been crystallized, a computa ...
... Tanaka et al., 2003). In each case, the three CESA isoforms are integrated into a cellulose synthesis complex (CSC) that moves in the plane of the plasma membrane as cellulose fibrils are formed (Paredez et al., 2006; Endler and Persson, 2011). Although no plant CESA has been crystallized, a computa ...
Notes for using PROTPOL.f
... square of the coefficient for the basis transition in the eigenvector. The first set has the results for the initial exciton calculation. The second set has the exciton rotational strengths but the wavelengths and dipole strengths include the polarizability contributions. The third set has the polar ...
... square of the coefficient for the basis transition in the eigenvector. The first set has the results for the initial exciton calculation. The second set has the exciton rotational strengths but the wavelengths and dipole strengths include the polarizability contributions. The third set has the polar ...
- computer science publication server
... i.e., pairs where both sequences are in the same superfamily and 3,556,622 pairs where the sequences are in distinct super-families. On the SCOP fold level the corresponding numbers are 76,660 and 3,545,426 pairs, respectively. ...
... i.e., pairs where both sequences are in the same superfamily and 3,556,622 pairs where the sequences are in distinct super-families. On the SCOP fold level the corresponding numbers are 76,660 and 3,545,426 pairs, respectively. ...
The nutrient requirements of calves
... protein in calf weight gains, the more efficiently it can be used by the calf for growth because the supply of amino acids will more closely match its requirement. In other words, there will be less likelihood of any amino acids limiting calf performance or of excess amino acids being wasted as prot ...
... protein in calf weight gains, the more efficiently it can be used by the calf for growth because the supply of amino acids will more closely match its requirement. In other words, there will be less likelihood of any amino acids limiting calf performance or of excess amino acids being wasted as prot ...
Protein - Creating Vitality
... supplies in order to maintain their structure and function. Every cell in the body is held together with proteins. Enzymes that perform essential functions of each cell are proteins. The immune system has a high turnover rate of material that is mostly made of protein, and so inadequate protei ...
... supplies in order to maintain their structure and function. Every cell in the body is held together with proteins. Enzymes that perform essential functions of each cell are proteins. The immune system has a high turnover rate of material that is mostly made of protein, and so inadequate protei ...
Protein structure prediction
... • Understand protein folding, interaction capabilities, protein docking • Domain prediction, function prediction • Drug design and/or optimization More than 50% of the drugs target receptor proteins • Enzymes design and/or optimization • Inverse problem: protein synthesis of a given shape Can restri ...
... • Understand protein folding, interaction capabilities, protein docking • Domain prediction, function prediction • Drug design and/or optimization More than 50% of the drugs target receptor proteins • Enzymes design and/or optimization • Inverse problem: protein synthesis of a given shape Can restri ...
2.7. Future of plant-based protein sources
... laborious or time-consuming to prepare. They often think that beans and soy products need hours of soaking or that the products need germinating. Even some vegetarians were frustrated with the long time that some vegetarian foods take to prepare. Unfamiliarity of the products is a problem for vegeta ...
... laborious or time-consuming to prepare. They often think that beans and soy products need hours of soaking or that the products need germinating. Even some vegetarians were frustrated with the long time that some vegetarian foods take to prepare. Unfamiliarity of the products is a problem for vegeta ...
Comparative Modeling of Mainly
... • In order to produce more accurate sequence-structure alignments, we return several possible “wraps” and try to pack sidechains. • So sidechain packing is used earlier in the comparative modeling process; also to help find the correct sequence-structure alignment. ...
... • In order to produce more accurate sequence-structure alignments, we return several possible “wraps” and try to pack sidechains. • So sidechain packing is used earlier in the comparative modeling process; also to help find the correct sequence-structure alignment. ...
SISYPHUS—structural alignments for proteins with non
... relationships are projected on a hierarchical tree which evolves with the increasing amount of structural data. The basic unit of classification is the protein domain. In the classification scheme, protein domains are initially linked on different hierarchical levels corresponding to their homology. ...
... relationships are projected on a hierarchical tree which evolves with the increasing amount of structural data. The basic unit of classification is the protein domain. In the classification scheme, protein domains are initially linked on different hierarchical levels corresponding to their homology. ...
INVESTIGATION INTO THE ALLOSTERIC REGULATION OF MITOTIC KINESIN EG5 Introduction Results
... are likely contingent upon the different modes of contact to the L5 pocket. The pathway of allosteric inhibition is conserved. The long distance allosteric network observed originally in Eg5 is conserved in Klp61F. The networks of amino acid residues involved in allosteric communication between the ...
... are likely contingent upon the different modes of contact to the L5 pocket. The pathway of allosteric inhibition is conserved. The long distance allosteric network observed originally in Eg5 is conserved in Klp61F. The networks of amino acid residues involved in allosteric communication between the ...
Fast Protein Folding in the Hydrophobic
... Recall that two 1’s can be topological neighbors only if there is an even number of elements between them. It follows from our definition of blocks that two 1’s within a block cannot be topological neighbors. Further, any pair of 1‘s take from blocks bh and b~ may be topological neighbors only when ...
... Recall that two 1’s can be topological neighbors only if there is an even number of elements between them. It follows from our definition of blocks that two 1’s within a block cannot be topological neighbors. Further, any pair of 1‘s take from blocks bh and b~ may be topological neighbors only when ...
Basic Structure of Proteins
... preceding and following turns by hydrogen bonds between the N-H groups and the oxygen atom of the C=O group Each amino acid establishes a hydrogen bond with other situated 4 residues ahead the helix The side chains R of the different residues project radially from the helix ...
... preceding and following turns by hydrogen bonds between the N-H groups and the oxygen atom of the C=O group Each amino acid establishes a hydrogen bond with other situated 4 residues ahead the helix The side chains R of the different residues project radially from the helix ...
Fragment Screening by WAC - Transientic Interactions
... fragment to the target protein/the active site of the protein, screening on a an reference column is required. This can either be a blank column with no immobilized target protein, or ...
... fragment to the target protein/the active site of the protein, screening on a an reference column is required. This can either be a blank column with no immobilized target protein, or ...
Molecular Docking
... Flexibility Through Soft Docking Methods The simple approach to tackle the protein flexibility problem is the 'soft docking' method It allows for slight penetrations between the receptor and the ligand molecules; this is a mathematical trick where the receptor and the ligand are held rigid and a ...
... Flexibility Through Soft Docking Methods The simple approach to tackle the protein flexibility problem is the 'soft docking' method It allows for slight penetrations between the receptor and the ligand molecules; this is a mathematical trick where the receptor and the ligand are held rigid and a ...
北京聚合美生物科技有限公司 Mei5 Biotechnology, Co., Ltd M5 GFP
... localization in vivo. Several GFP mutants have been developed, including EGFP, which fluoresce more intensely than the wildtype GFP and have shifted excitation maxima, making them useful for FACS and fluorescence microscopy as well as double-labeling applications. GFP is widely used in expression ve ...
... localization in vivo. Several GFP mutants have been developed, including EGFP, which fluoresce more intensely than the wildtype GFP and have shifted excitation maxima, making them useful for FACS and fluorescence microscopy as well as double-labeling applications. GFP is widely used in expression ve ...
7 Putting genetics into optogenetics: knocking out proteins with light
... The RING finger E3 ligase family has been used to destabilize specific proteins [8]. These proteasome-dependent degrons differ in their method for inducing interactions between the E3 ubiquitin ligase complex and the target protein. The protein can be destabilized by: amino acids at the N-terminus o ...
... The RING finger E3 ligase family has been used to destabilize specific proteins [8]. These proteasome-dependent degrons differ in their method for inducing interactions between the E3 ubiquitin ligase complex and the target protein. The protein can be destabilized by: amino acids at the N-terminus o ...
Production and Purification of Recombinant Fluorescent Protein
... resistance gene. These elements, often termed shuttle sequences, allow propagation and selection of the plasmid within a bacterial host to generate sufficient quantities of the vector for mammalian transfections. In addition, the plasmid must contain one or more eukaryotic genetic elements that cont ...
... resistance gene. These elements, often termed shuttle sequences, allow propagation and selection of the plasmid within a bacterial host to generate sufficient quantities of the vector for mammalian transfections. In addition, the plasmid must contain one or more eukaryotic genetic elements that cont ...
Description of the KDD-Cup 2004 Protein Data
... Features 12-16 include our standard five measures of similarity for a given feature. The Z score, the reverse energy, the raw score, TE13 energy, and TE13 Z score. This set of five is used in other measures as well. The Z score is the most sensitive and accurate, however, it is the most expensive to ...
... Features 12-16 include our standard five measures of similarity for a given feature. The Z score, the reverse energy, the raw score, TE13 energy, and TE13 Z score. This set of five is used in other measures as well. The Z score is the most sensitive and accurate, however, it is the most expensive to ...
... Choice A: Briefly describe the major thermodynamic factor that destabilizes the native (folded) state of a protein. Use an equation if appropriate. Choice B: Explain what thermodynamic factor(s) are responsible for the fact that most proteins have well packed cores. Choice C: The energy to break a h ...
GroEL and GroES - ETH - D-INFK - TI
... their native states, based on information in their amino acid sequence Sometimes proteins fail to fold and need help Cells have developed molecules that catalyse protein folding called chaperones. Molecular chaperones supervise the state of newly formed proteins, hold them to the proper pathway of f ...
... their native states, based on information in their amino acid sequence Sometimes proteins fail to fold and need help Cells have developed molecules that catalyse protein folding called chaperones. Molecular chaperones supervise the state of newly formed proteins, hold them to the proper pathway of f ...
View PDF - e-Science Central
... for both the formulation and administration of proteins with limited solubility at physiological pH. PEG conjugation can increase apparent size of the proteins and then reduce renal filtration and decrease clearance. Furthermore, the PEGylation, alone or in combination with targeted drug delivery sy ...
... for both the formulation and administration of proteins with limited solubility at physiological pH. PEG conjugation can increase apparent size of the proteins and then reduce renal filtration and decrease clearance. Furthermore, the PEGylation, alone or in combination with targeted drug delivery sy ...
Rosetta@home
Rosetta@home is a distributed computing project for protein structure prediction on the Berkeley Open Infrastructure for Network Computing (BOINC) platform, run by the Baker laboratory at the University of Washington. Rosetta@home aims to predict protein–protein docking and design new proteins with the help of about sixty thousand active volunteered computers processing at 83 teraFLOPS on average as of April 18, 2014. Foldit, a Rosetta@Home videogame, aims to reach these goals with a crowdsourcing approach. Though much of the project is oriented towards basic research on improving the accuracy and robustness of the proteomics methods, Rosetta@home also does applied research on malaria, Alzheimer's disease and other pathologies.Like all BOINC projects, Rosetta@home uses idle computer processing resources from volunteers' computers to perform calculations on individual workunits. Completed results are sent to a central project server where they are validated and assimilated into project databases. The project is cross-platform, and runs on a wide variety of hardware configurations. Users can view the progress of their individual protein structure prediction on the Rosetta@home screensaver.In addition to disease-related research, the Rosetta@home network serves as a testing framework for new methods in structural bioinformatics. These new methods are then used in other Rosetta-based applications, like RosettaDock and the Human Proteome Folding Project, after being sufficiently developed and proven stable on Rosetta@home's large and diverse collection of volunteer computers. Two particularly important tests for the new methods developed in Rosetta@home are the Critical Assessment of Techniques for Protein Structure Prediction (CASP) and Critical Assessment of Prediction of Interactions (CAPRI) experiments, biannual experiments which evaluate the state of the art in protein structure prediction and protein–protein docking prediction, respectively. Rosetta@home consistently ranks among the foremost docking predictors, and is one of the best tertiary structure predictors available.