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chicken.db - Bioconductor
chicken.db - Bioconductor

The Wnt code: cnidarians signal the way
The Wnt code: cnidarians signal the way

... signalling pathways do not differ substantially from those of vertebrates. This is noteworthy, since several gene families are completely absent from the genomes of urochordates (Ciona and Oikopleura) as well as from the model invertebrates Caenorhabditis and Drosophila. Thus, a great deal of the ge ...
Structure, expression and chromosomal location of the Oct
Structure, expression and chromosomal location of the Oct

... the relationship between Oct-4 and t 12 is to analyze the genomic structure and sequence of Oct-4 from the t 12 haplotype. A t w5 homozygous revertant ( t w5g unpublished) cosmid library was screened with the same Oct-4 probe to exclude trivial differences between the t- and wild-type sequences. A c ...
Plant Molecular Biology
Plant Molecular Biology

... All plant seeds were sterilized by subsequent soakings in concentrated sulfuric acid and bleach as described by Van Brussel et al. [23]. After germination, seedlings with a tooth length of about 1 cm were transferred to test tubes containing Jensen agar slants [23]. After incubation of the seedlings ...
day 3
day 3

... mRNA half-lifetime ~ minutes thus and ...
Different strategies of osmoadaptation in the closely
Different strategies of osmoadaptation in the closely

... relies solely on the accumulation of amino acids, while Enh. salina SWB007, which was grown between 0.5 and 3 % NaCl, employs, besides betaine, hydroxyectoine as the major compatible solute. In accordance with this analysis, only in the latter strain was a locus identified that codes for genes corre ...
Giant viruses, giant chimeras: The multiple evolutionary histories of
Giant viruses, giant chimeras: The multiple evolutionary histories of

... sequences from other eukaryotic groups. A similar analysis for the entire set of Mimivirus ORFs showed that about 40 of them have eukaryotic or bacterial sequences as best matches [21-23]. However, BLAST searches, as also other surrogate methods, offer only a very rough estimate of the phylogenetic ...
PDF
PDF

... The function of BR-C is conserved at least in lepidopterans, as BR-C Z4 from Manduca sexta partially rescues the rbp mutants (Bayer et al., 2003), and corresponding metamorphic defects result from BR-C RNAi in the silkmoth Bombyx mori (Uhlirova et al., 2003). However, because Diptera and Lepidoptera ...
Planning and acting in partially observable stochastic domains
Planning and acting in partially observable stochastic domains

... and observations and use this information, together with its knowledge of the underlying dynamics of the world (the map and other information), to maintain an estimate of its location. Many engineering applications follow this approach, using methods like the Kalman filter [26] to maintain a running ...
Chapter 9 Population genetics part IIIa Linkage
Chapter 9 Population genetics part IIIa Linkage

... The importance of latent variation  However, it’s less clear how a population could as a ...
Document
Document

... • Where is the SNP mapped? Exon, promoter, UTR, etc  picture of gene with mapped to the gene structure. • How was it discovered? Method • What assurances do you have that it is real? Validated how? • What population – African, European, etc? • What is the allele frequency of each SNP? Common (>10%) ...
Solving the shugoshin puzzle
Solving the shugoshin puzzle

... We calculated the fraction of adjacent gene pairs that are conserved in orientation between every possible pair of species and plotted it against the species’ divergence times (Figure 1a; see Supplementary Material 1). At large evolutionary distances of 400 My and more, for instance, between Euascom ...
GENETIC CONSTRAINTS ON ADAPTATION TO A CHANGING
GENETIC CONSTRAINTS ON ADAPTATION TO A CHANGING

... depends on genetic correlations between traits, contrary to the isotropic case investigated in previous studies. Adaptation may be faster on average with more genetic correlation between traits, if these traits are selected to change jointly more often than the average pair of traits. However, natur ...
AP Biology - Effingham County Schools
AP Biology - Effingham County Schools

... by only a few individuals some rare alleles may be at high frequency; others may be missing  skew the gene pool of new population ...
In Silico method for identification of MHC class I
In Silico method for identification of MHC class I

... pig, dog) are highly consistent with the published data. Overall, when applied to species that have not  been studied before, we find a highly variable number of CD1 genes and only one or two MR1 genes. The  variability in size of the CD1 loci is in line with the sizes of the CD1 family indicated by ...
Specialized adaptation of a lactic acid bacterium to the milk
Specialized adaptation of a lactic acid bacterium to the milk

... The S. thermophilus LMD-9 genome is comprised of a 1.8 Mbp circular chromosome (39.1% GC; 1,834 predicted open reading frames) and two small cryptic plasmids. Genome comparison with the previously sequenced LMG 18311 and CNRZ1066 strains revealed 114 kb of LMD-9 specific chromosomal region, includin ...
How to order genetic testing for Hemophilia A and B
How to order genetic testing for Hemophilia A and B

... In part 1 of this talk, I covered when it is appropriate to test for hemophilia. Today, in part 2, I’ll discuss the 2 pieces of information you need to choose the correct genetic test. I’ve simplified this information for anyone who is not a practicing hematologist or geneticist, but a referral to e ...
Reviving the Superorganism
Reviving the Superorganism

... Individuals can be regarded as groups of genes that have become functionally organized by natural selection to perpetuate themselves. We can use this analogy to show how groups of individuals can be similarly functionally organized, in which case the individuals acquire the status of alleles and the ...
Egg production
Egg production

Ribosomal frameshifting in decoding antizyme mRNAs from yeast
Ribosomal frameshifting in decoding antizyme mRNAs from yeast

... polyamine synthesis, is tightly regulated. The existence of a negative regulator of ornithine decarboxylase, termed ornithine decarboxylase antizyme, or now simply, antizyme, was first postulated as far back as 1976 (24). However, it was only when an antizyme gene from rat was cloned and its expressi ...
Further manipulation by centric misdivision of the 1RS.1BL
Further manipulation by centric misdivision of the 1RS.1BL

6.3 Mendel and Heredity
6.3 Mendel and Heredity

... when at least one allele is dominant. – A recessive allele is expressed as a phenotype only when two copies are present. – Symbols: Dominant alleles are represented by uppercase letters; recessive alleles by lowercase letters. ...
Genome Rearrangements ()
Genome Rearrangements ()

... to place a pancake in its right position, 2n – 2 steps total at most • William Gates and Christos Papadimitriou showed in the mid-1970s that this problem can be solved by at most 5/3 (n + 1) prefix reversals ...
SARS Outbreaks in Ontario, Hong Kong and Singapore: the role of
SARS Outbreaks in Ontario, Hong Kong and Singapore: the role of

... The normalized LD (Lewontin 1964) is defined as D' = D/ Dmax, where Dmax is the maximum that D can have, which is Dmax = max(-pApB, -papb) if D < 0, or min(pApb, papB) if D > 0. ...
Bisexual branching processes to model extinction conditions for Y
Bisexual branching processes to model extinction conditions for Y

... microdeletions of this chromosome’s long arm (Yq). These Yq deletions define three regions collectively known as AZF (azoospermia factors), with deletions of the AZFc region being the commonest. The Yq deletion is associated with males with fertility problems (for a review, see Krausz et al. (2003)), ...
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Gene expression programming

In computer programming, gene expression programming (GEP) is an evolutionary algorithm that creates computer programs or models. These computer programs are complex tree structures that learn and adapt by changing their sizes, shapes, and composition, much like a living organism. And like living organisms, the computer programs of GEP are also encoded in simple linear chromosomes of fixed length. Thus, GEP is a genotype-phenotype system, benefiting from a simple genome to keep and transmit the genetic information and a complex phenotype to explore the environment and adapt to it.
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