BLAST Phase 1 - Central Web Server 2
... • In the genbank records at NCBI the links connect to the features (i.e. the pubmed record, or the encoded protein sequence) --- not easy to work with. ...
... • In the genbank records at NCBI the links connect to the features (i.e. the pubmed record, or the encoded protein sequence) --- not easy to work with. ...
Basic Overview of Bioinformatics Tools and Biocomputing
... • Affine gap costs - scoring system for gaps within alignments which charges a penalty for gap formation and additional perresidue penalty proportional to size of gap • Alignment score - numerical value indicating the overall quality of an alignment, the higher the better the alignment. • Algorithm ...
... • Affine gap costs - scoring system for gaps within alignments which charges a penalty for gap formation and additional perresidue penalty proportional to size of gap • Alignment score - numerical value indicating the overall quality of an alignment, the higher the better the alignment. • Algorithm ...
PROTEIN ANALYSIS - Farmasi Carbon 2012
... • Firstly, the peptide bonds in protein reduce Cu2+ ions from the cupric sulfate to Cu1+ . The amount of Cu2+ reduced is proportional to the amount of protein present in the solution. • Next, two molecules of bicinchoninic acid chelate with each Cu1+ ion, forming a purple-colored product that stron ...
... • Firstly, the peptide bonds in protein reduce Cu2+ ions from the cupric sulfate to Cu1+ . The amount of Cu2+ reduced is proportional to the amount of protein present in the solution. • Next, two molecules of bicinchoninic acid chelate with each Cu1+ ion, forming a purple-colored product that stron ...
Proteins Chapter 3 pages 54-58
... water, which of the following properties of water could help explain what you observe? A) It is more dense when liquid than when frozen. B) It can dissolve large quantities of solutes. C) It has a high specific heat. D) It has a strong surface tension. E) None of these can explain what you observe. ...
... water, which of the following properties of water could help explain what you observe? A) It is more dense when liquid than when frozen. B) It can dissolve large quantities of solutes. C) It has a high specific heat. D) It has a strong surface tension. E) None of these can explain what you observe. ...
Dörte Harpke - Lehrstuhl Technische Informatik der MLU Halle
... species were chosen to check the utility of the ITS region for phylogenetic studies. Interestingly, amplification of the ITS region revealed two bands differing in sequence length. Direct sequencing of upper bands for the two individuals revealed an overlap of different sequences by multiple peaks ...
... species were chosen to check the utility of the ITS region for phylogenetic studies. Interestingly, amplification of the ITS region revealed two bands differing in sequence length. Direct sequencing of upper bands for the two individuals revealed an overlap of different sequences by multiple peaks ...
D - mbg
... >Rat VHLTDAKAAVNGGNPDDVGEGLVTQYDSDLSSASAIMGPK >Duck VHWTAEKQLITGGNVADCAEALITQFASNLSSPTAILGPM >Goose VHWTAEKQLITGGNVADCAEALITQFSSNLSSPTAILGPM >Crocodile ASFDPHKQLIGDHDVAHCGESMIKRYENDISNAQAIMHEK >Alligator ASFDAHRKFIVDADVAQCADSMIKRYEHKMCNAHDILHSK Kosinski, R. ...
... >Rat VHLTDAKAAVNGGNPDDVGEGLVTQYDSDLSSASAIMGPK >Duck VHWTAEKQLITGGNVADCAEALITQFASNLSSPTAILGPM >Goose VHWTAEKQLITGGNVADCAEALITQFSSNLSSPTAILGPM >Crocodile ASFDPHKQLIGDHDVAHCGESMIKRYENDISNAQAIMHEK >Alligator ASFDAHRKFIVDADVAQCADSMIKRYEHKMCNAHDILHSK Kosinski, R. ...
Slide 1
... • Each of the three groups collects a portion of the total sequence data reported worldwide, and all new and updated database entries are exchanged between the groups on a daily basis ...
... • Each of the three groups collects a portion of the total sequence data reported worldwide, and all new and updated database entries are exchanged between the groups on a daily basis ...
Periodicities in Sequence Residue Hydropathy and the Implications on Protein Folds
... sequence is crucial to many fields of study, such as ligand-protein docking, as well as to the understanding of protein function at the molecular level. The underlying hypothesis that motivates prediction efforts is that the complex packing arrangements of the main chain and side chains atoms of a f ...
... sequence is crucial to many fields of study, such as ligand-protein docking, as well as to the understanding of protein function at the molecular level. The underlying hypothesis that motivates prediction efforts is that the complex packing arrangements of the main chain and side chains atoms of a f ...
Microsoft Word - Lab05WalrusesWhalesWeasels - mvhs
... NOTE: Phylogenetic trees built with software can be used to make conclusions about common ancestry. Branch lengths are a function of the number of changes assumed to transition from one sequence to another, and sometimes how the phylogeny is formatted (so all the labels fit -- you'll notice that a C ...
... NOTE: Phylogenetic trees built with software can be used to make conclusions about common ancestry. Branch lengths are a function of the number of changes assumed to transition from one sequence to another, and sometimes how the phylogeny is formatted (so all the labels fit -- you'll notice that a C ...
ppt - University of Illinois Urbana
... Characterizing a Family - Compare the sequence and structure patterns of the family members to reveal shared characteristics that potentially describe common biological properties – Multiple sequence alignment – Motif/Domain - sequence and/or structure patterns common to protein family members (a tr ...
... Characterizing a Family - Compare the sequence and structure patterns of the family members to reveal shared characteristics that potentially describe common biological properties – Multiple sequence alignment – Motif/Domain - sequence and/or structure patterns common to protein family members (a tr ...
exploring protein structure
... the proteins that you eat and digest. Every time you eat a burger (vegie or beef), you break the proteins down into single amino acids ready for use in building new proteins. And yes, proteins have the job of digesting proteins, they are known as proteases. There are only 20 different amino acids (s ...
... the proteins that you eat and digest. Every time you eat a burger (vegie or beef), you break the proteins down into single amino acids ready for use in building new proteins. And yes, proteins have the job of digesting proteins, they are known as proteases. There are only 20 different amino acids (s ...
Stages and mechanisms of translation, regulation of translat
... aminoacyl-tRNA in the A site 2) Formation of the peptide bound (enzyme – peptidyl transferase) between methionine and AA in Acentre. The residue of methionine is transferred on the amino group of another AA 3) Translocation – shift of ribosome by one codon. Methionyl-tRNA is released from P-centre. ...
... aminoacyl-tRNA in the A site 2) Formation of the peptide bound (enzyme – peptidyl transferase) between methionine and AA in Acentre. The residue of methionine is transferred on the amino group of another AA 3) Translocation – shift of ribosome by one codon. Methionyl-tRNA is released from P-centre. ...
Sequence Alignment - Mainlab Bioinformatics
... • Used to align two closely related sequences over similar length • Useful for checking minor differences between two sequences, analyze polymorphism between closely related species, comparing two sequences that partially overlap ...
... • Used to align two closely related sequences over similar length • Useful for checking minor differences between two sequences, analyze polymorphism between closely related species, comparing two sequences that partially overlap ...
Pymol Tutorial
... If you want to see the structure in full screen you must click on the 'F' in the lower right corner. You can move the structure to explore the area of binding. Some basic moves: - Holding the left mouse button on the black background you can rotate the structure. - Holding down the right mouse butt ...
... If you want to see the structure in full screen you must click on the 'F' in the lower right corner. You can move the structure to explore the area of binding. Some basic moves: - Holding the left mouse button on the black background you can rotate the structure. - Holding down the right mouse butt ...
comprehensive biochemistry
... 12. Extensions on the pathways of the biosynthesis of aromatic amino acids . . . a. Introduction b. Derivatives of phenylalanine and tyrosine (/) Tanning agents in Arthropoda, 174 - (ii) Iodinated thyronines, 176 - (Hi) From phenylalanine and tyrosine to phenylalkylamines, 177 c. Tryptophan derivati ...
... 12. Extensions on the pathways of the biosynthesis of aromatic amino acids . . . a. Introduction b. Derivatives of phenylalanine and tyrosine (/) Tanning agents in Arthropoda, 174 - (ii) Iodinated thyronines, 176 - (Hi) From phenylalanine and tyrosine to phenylalkylamines, 177 c. Tryptophan derivati ...
Production of Turnip yellow mosaic virus Capsids: The Future in
... Zinc plays a role in immune system Concerns: Increased risk of common infections and growth stunting in children Women who are pregnant or lactating ...
... Zinc plays a role in immune system Concerns: Increased risk of common infections and growth stunting in children Women who are pregnant or lactating ...
Transcription and Translation
... (RER) – makes proteins that leave the cell (insulin, hormones, enzymes) ...
... (RER) – makes proteins that leave the cell (insulin, hormones, enzymes) ...
Protein_Informatics_Annotation
... Summary: This gene encodes an iron containing glycoprotein which catalyzes the conversion of orthophosphoric monoester to alcohol and orthophosphate. It is the most basic of the acid phosphatases and is the only form not inhibited by L(+)tartrate. [provided by RefSeq, Aug 2008]. ...
... Summary: This gene encodes an iron containing glycoprotein which catalyzes the conversion of orthophosphoric monoester to alcohol and orthophosphate. It is the most basic of the acid phosphatases and is the only form not inhibited by L(+)tartrate. [provided by RefSeq, Aug 2008]. ...
supplemental methods
... build 124, 2005; pre-HapMap phase I data release) in the Scottish population prior to genotyping. Sequence was analysed using Sequencher 4.2 software (Gene Codes Corporation). Primer sets used to amplify GLI1 are available on request. Four multi-marker GLI1 tSNPs (r2≥0.8) were identified (rs3817474, ...
... build 124, 2005; pre-HapMap phase I data release) in the Scottish population prior to genotyping. Sequence was analysed using Sequencher 4.2 software (Gene Codes Corporation). Primer sets used to amplify GLI1 are available on request. Four multi-marker GLI1 tSNPs (r2≥0.8) were identified (rs3817474, ...
Part 2
... cut off range can be specified whereby only ions in that particular range move ahead for detection. Sensitivity of detection for positive ions is higher than negative ions while neutral ions cannot be detected by MS. 7. Detector: The final component of the spectrometer is the detector which can reco ...
... cut off range can be specified whereby only ions in that particular range move ahead for detection. Sensitivity of detection for positive ions is higher than negative ions while neutral ions cannot be detected by MS. 7. Detector: The final component of the spectrometer is the detector which can reco ...
Slides
... E value: Expectation value. The number of different alignents with scores equivalent to or better than S that are expected to occur in a database search by chance. The lower the E value, the more significant the score. P value :The probability of an alignment occurring with the score in question or ...
... E value: Expectation value. The number of different alignents with scores equivalent to or better than S that are expected to occur in a database search by chance. The lower the E value, the more significant the score. P value :The probability of an alignment occurring with the score in question or ...
Protein Structure - Laboratory of Molecular Modelling
... – Family – based on clear evolutionary relationship (pairwise residue identities between proteins are >30%) – Superfamily – based on probable evolutionary origin (low sequence identity but common structure/function features – Fold – based on major structural similarity (major secondary structures in ...
... – Family – based on clear evolutionary relationship (pairwise residue identities between proteins are >30%) – Superfamily – based on probable evolutionary origin (low sequence identity but common structure/function features – Fold – based on major structural similarity (major secondary structures in ...
Protein Structure
... – Family – based on clear evolutionary relationship (pairwise residue identities between proteins are >30%) – Superfamily – based on probable evolutionary origin (low sequence identity but common structure/function features – Fold – based on major structural similarity (major secondary structures in ...
... – Family – based on clear evolutionary relationship (pairwise residue identities between proteins are >30%) – Superfamily – based on probable evolutionary origin (low sequence identity but common structure/function features – Fold – based on major structural similarity (major secondary structures in ...