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Cancer genes
Cancer genes

... Both influenced by genetic predisposition and by environmental factors, including life-style. Individual response to exogenous and endogenous genotoxins due to genetic polymorphisms: • of xenobiotic-metabolizing enzymes • of genes of DNA repair or genes of folate metabolism = „low penetrant genes“ ...
Lecture 19 Evolution of Senescence
Lecture 19 Evolution of Senescence

... of 1,762 German centenarians/nonagenarians and younger controls and provide evidence that polymorphisms in this gene were indeed associated with the ability to attain exceptional old age. The FOXO3A association was considerably stronger in centenarians than in nonagenarians, highlighting the importa ...
Nutritional Genomics
Nutritional Genomics

... c. What’s Hot in Nutrition and Gene Science d. The Two Approaches i. Reductionist Approach ii. Systems Approach ...
Organelle genome evolution
Organelle genome evolution

... be added, together with other hypotheses, such as Muller’s ratchet and the high mutagenicity of free radicals1, to selective pressures that, in some but not all lineages, contribute to genetic erosion of organelles. However, their hypothesis is restricted to: (1) uniparentally inherited organelles, ...
Albert Szent-Györgyi Prize for Progress in Cancer Research
Albert Szent-Györgyi Prize for Progress in Cancer Research

... Cavenee is a Fellow of the National Foundation for Cancer Research and has won many honors, including the Charles S. Mott Prize of the General Motors Cancer Research Foundation. He is a member of the National Academy of Sciences, a former president of the American Association for Cancer Research, a ...
mutations - Sites@UCI
mutations - Sites@UCI

Genetic Testing for Cancer Susceptibility
Genetic Testing for Cancer Susceptibility

Test Info Sheet
Test Info Sheet

... focused array CGH analysis with exon-level resolution (ExonArrayDx) is available is available to detect such deletions or duplications. Mutation spectrum: While mutations have been identified in all 5 exons and intron 2 of EFNB1, the majority (52%) are located in exon 2. Another 20% of mutations ha ...
Project 1
Project 1

... of cancer cells is characterized by morphologic and biochemical transition, such as epithelial to mesenchymal transition (EMT), and the reciprocal cellular interaction and signaling between tumor and stroma. Studies from our laboratory using cell culture and animal models, validated by clinical spec ...
Mutation Notes
Mutation Notes

... ►A point mutation is a change in a single base pair in DNA.  A change in a single nitrogenous base can change the entire structure of a protein because a change in a single amino acid can affect the shape of the protein. ...
Chap 8 – Cancer and Regulation of Cell Cycle
Chap 8 – Cancer and Regulation of Cell Cycle

...  Mutations in two types of genes can cause cancer. 1. Oncogenes – Proto-oncogenes are normal genes that promote cell division. – Mutations to proto-oncogenes create cancer-causing oncogenes that often stimulate cell division. ...
BIOL290
BIOL290

... syndrome differ from the location of repeats found in Huntington disease? F. What are some ways to induce mutations? G. Review the Ames test. H. Review the biological repair mechanisms of mutations: direct reversal, base-excision repair, nucleotide-excision repair, and mismatch repair. I. Understand ...
Introduction to Genomics - Department of Microbiology and Plant
Introduction to Genomics - Department of Microbiology and Plant

... This 3000-level course is intended for plant biology, microbiology, biology, and biochemistry students interested in the study of the entire genome of prokaryotic and eukaryotic organisms. Through discussions,, reading of literature as well as applied exercises, you will study the organization and e ...
Gene Section BNIP3 (Bcl-2/adenovirus E1B 19kD-interacting protein 3) Atlas of Genetics and Cytogenetics
Gene Section BNIP3 (Bcl-2/adenovirus E1B 19kD-interacting protein 3) Atlas of Genetics and Cytogenetics

... BNIP3 can induce autophagy. However whether the consequence of the autophagy is the cell death or survival remains to be established. Since BNIP3 is induced by hypoxia through transcription factor HIF-1, it was postulated to play a role in hypoxia-induced cell death. Hypoxia-induced acidosis augment ...
BSC 1010 Exam 3 Study Guide
BSC 1010 Exam 3 Study Guide

... • Mitochondria and Chloroplasts have their own genomes • traits controlled by these genes do not follow the chromosomal theory of inheritance • Maternal inheritance: 4. Genetic Mapping • The science of determining the location of a gene on a chromosome • Based on the recombination frequency of genes ...
Predictive Models of Complex Traits: Inference of Statistical Dependencies and Predictive Geometry
Predictive Models of Complex Traits: Inference of Statistical Dependencies and Predictive Geometry

... well as inference of the graphical model will be stated. An interesting observation is that the rate of convergence of both estimates depends on the dimension of the underlying manifold on which the marginal distribution is assumed to be concentrated, the result does not depend on the number of non- ...
Methylation
Methylation

... are needed to see this picture. ...
OGP
OGP

... 50% more genes in Ce, despite complexity of Dm( # cells, # cell types, morphogenesis) Large gene families ...
MOLECULAR MEDICINE & GENETICS Stephen J. Weiss, MD Division Chief/Professor
MOLECULAR MEDICINE & GENETICS Stephen J. Weiss, MD Division Chief/Professor

... damage repair. In both cases, the team demonstrated that the proteins acted as “first responders” to the site of DNA damage, reading the distress signals and calling in full-scale repair mechanisms. Yu’s team found that both proteins, called RAP80 and CCDC98, are involved in attracting BRCA1 to the ...
Mutation - Teacherpage
Mutation - Teacherpage

... • However, a substitution in the first or the second base of the codon, changes the code for the amino acid. • UUU codon is for phenylalanine • UCU codon is for serine • CUU codon is for leucine ...
Genetic Justice
Genetic Justice

... • 1953 James Watson and Francis Crick discover structure of DNA... • 2003: Human Genome Project completed • Dec. 2005: Cancer Genome Atlas • …number (and accuracy) of genetic tests is rapidly increasing…over 1000 tests • -Tests: PKU, Huntington’s, CF, Tay Sachs, Sickle-Cell… • -Goal of $1000 human g ...
Medical Benefits from Human Genome Project
Medical Benefits from Human Genome Project

Olshan leads national effort to examine causes of childhood cancer
Olshan leads national effort to examine causes of childhood cancer

... how diet and other lifestyle factors work with ...
ANSWERS TO REVIEW QUESTIONS
ANSWERS TO REVIEW QUESTIONS

Better understanding cancer patients` needs
Better understanding cancer patients` needs

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Oncogenomics



Oncogenomics is a relatively new sub-field of genomics that applies high throughput technologies to characterize genes associated with cancer. Oncogenomics is synonymous with ""cancer genomics"". Cancer is a genetic disease caused by accumulation of mutations to DNA leading to unrestrained cell proliferation and neoplasm formation. The goal of oncogenomics is to identify new oncogenes or tumor suppressor genes that may provide new insights into cancer diagnosis, predicting clinical outcome of cancers, and new targets for cancer therapies. The success of targeted cancer therapies such as Gleevec, Herceptin, and Avastin raised the hope for oncogenomics to elucidate new targets for cancer treatment.Besides understanding the underlying genetic mechanisms that initiates or drives cancer progression, one of the main goals of oncogenomics is to allow for the development of personalized cancer treatment. Cancer develops due to an accumulation of mutations in DNA. These mutations accumulate randomly, and thus, different DNA mutations and mutation combinations exist between different individuals with the same type of cancer. Thus, identifying and targeting specific mutations which have occurred in an individual patient may lead to increased efficacy of cancer therapy.The completion of the Human Genome Project has greatly facilitated the field of oncogenomics and has increased the abilities of researchers to find cancer causing genes. In addition, the sequencing technologies now available for sequence generation and data analysis have been applied to the study of oncogenomics. With the amount of research conducted on cancer genomes and the accumulation of databases documenting the mutational changes, it has been predicted that the most important cancer-causing mutations, rearrangements, and altered expression levels will be cataloged and well characterized within the next decade.Cancer research may look either on the genomic level at DNA mutations, the epigenetic level at methylation or histone modification changes, the transcription level at altered levels of gene expression, or the protein level at altered levels of protein abundance and function in cancer cells. Oncogenomics focuses on the genomic, epigenomic, and transcript level alterations in cancer.
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