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Chem 109 C Fall 2014 Armen Zakarian Office: Chemistry Bldn 2217
Chem 109 C Fall 2014 Armen Zakarian Office: Chemistry Bldn 2217

... A decapeptide undergoes partial hydrolysis to give peptides whose amino acid compositions are shown. Reaction of the intact decapeptide with Edman s reagent releases PTH-Gly. What is the sequence of the decapeptide? ...
Lecture 6A/ Chapter 6 Protein
Lecture 6A/ Chapter 6 Protein

... • Mouth and Salivary Gland • Crushed and moistened in the mouth ...
BOXIN – AN ICHTHYOTOXIC PROTEIN FROM BOXFISHES  Research Article
BOXIN – AN ICHTHYOTOXIC PROTEIN FROM BOXFISHES Research Article

... strongly suggests the intense distinction between them (Table 2). The capability of boxin and pahutoxin to affect three separate ...
Lecture 25 (4/23/12) "Nerves III: The Chemical Synapse"
Lecture 25 (4/23/12) "Nerves III: The Chemical Synapse"

... Note that with the exception of the final step, the entire process may run only a few tenths of a millisecond, in the fastest synapses. 1. The process begins with a wave of electrochemical excitation called an action potential traveling along the membrane of the presynaptic cell, until it reaches th ...
1.0 amino acids as units of protein structure
1.0 amino acids as units of protein structure

... chains of the component amino acids extending outward from the central axis to avoid interfering sterically with each other. The coils are stabilized by hydrogen bonds between carbonyl O of 1st amino and amide N of 4th amino acid residue. Thus, in α-helix intra chain hydrogen bonding is present. Eac ...
Class: Protein functional Annotation and Family Classification
Class: Protein functional Annotation and Family Classification

... this protein and its possible function from available data Especially important for poorly characterized or uncharacterized (“hypothetical”) proteins More challenging for large sets of sequences generated by large-scale proteomics experiments The quality of this assessment is often critical for inte ...
A protein found in sunflower seeds could be the key to
A protein found in sunflower seeds could be the key to

... What makes SFTI-1 so good at inhibiting proteinases is its structure. Recently an important observation was made while looking at the structures of proteinases bound to either substrates or inhibitors: proteinases preferred a “flat” area of protein surface in front of the amino acid that it targets a ...
GEFs: master regulators of G
GEFs: master regulators of G

... GEF stands for guanine-nucleotide exchange factor, any of a large and diverse group of proteins that catalyze the release of GDP and the subsequent uptake of GTP by members of the Ras and heterotrimeric G-protein superfamilies (referred to here collectively as G proteins). When bound to GTP, G prote ...
Cellular Localization Data - SGD-Wiki
Cellular Localization Data - SGD-Wiki

... an   amino   acid   sequence   to   a   database   of   hidden   Markov   models   or   “HMMs”   (you   have   already   seen   some   of   these   in   assessing   conserved   domains   and   regions   in   your   predicted   protein).   ...
Slide 1
Slide 1

... TAP tag consists of (i) calmodulin-binding peptide (ii) TEV protease cleavage site (iii) Protein A -DNA coding the TAP tag is inserted after the DNA for the protein of interest -Organism produces a recombinant protein with the TAP tag -The protein of interest is free to associate with other proteins ...
Enhanced functional information from protein networks
Enhanced functional information from protein networks

... highlighted and many previously uncharacterized proteins can be associated with known pathways. Other features of the networks are interesting for biologists, including the observation that highly connected proteins in the yeast network correlate with essential proteins [12]. Prediction of protein n ...
Transcript I
Transcript I

... (causes a number of things: uptake of iodine, regulation of the volume of the cell to indicate how much hormone to intake, release of the hormone itself, etc.) o T3 & T4 now remaining in these lysosomes usually, but not always, are taken to a point on the plasma membrane of the cell where they will ...
2012-ISB-symposium
2012-ISB-symposium

... We present a visualization and analysis tool, called Spaghetti, for the exploration of mass spectrometry detected peptides and their structural locations. Studying patterns of peptide location across a protein can be used for many purposes: exploring PTM (post translational modification) locations w ...
Lysis of E.coli for the Purification of Soluble Recombinant Proteins
Lysis of E.coli for the Purification of Soluble Recombinant Proteins

... researcher with a large volume of dilute protein. Sonication, lysozyme or French pressure cell treatments3 are often used to lyse bacterial cells expressing cytoplasmic proteins. Recovery from these methods is variable and many times the yield is low. Sonication generates heat that may be detrimenta ...
Lecture 4: Cellular Building Blocks
Lecture 4: Cellular Building Blocks

... Continuity between organelle lumen & extracellular space ...
Molecular Mechanisms of Transforming Growth Factor
Molecular Mechanisms of Transforming Growth Factor

... type I, II, and III receptors based on their molecular weight. The type I and type II receptors belong to a large family of receptor serine/threonine kinases. Upon TGF-b ligand binding to type II receptor, type I receptor is recruited into a complex containing both receptors and ligand. This causes ...
I1284 - Sigma
I1284 - Sigma

... the control of the Lac promoter. This promoter is under the control of Lac repressor and is activated only in the presence of lactose or its synthetic analog IPTG. Like lactose, IPTG binds the repressor and releases it from its binding to the promoter, but unlike lactose it is not metabolized. Moreo ...
Fast, Sensitive Detection of EGF
Fast, Sensitive Detection of EGF

... The performance of the sandwich immunoassay (SI) and the direct immobilization (direct) methods were compared as a function of the concentration of ruthenylated α-phosphotyrosine using only 2,000 cell equivalents per well. The average signal is reported after background correction (the signal from u ...
Human Vascular Smooth Muscle Cells Contain Functional Estrogen
Human Vascular Smooth Muscle Cells Contain Functional Estrogen

... The atheroprotective effects of E2 are generally believed to be due to E2-induced changes in classic cardiovascular risk factors. For example, E2 use has been associated with increased high-density lipoprotein levels,5'13,14 decreased low-density lipoprotein levels,5 13 and improved glucose metaboli ...
methods to visualize newly synthesized proteins in situ
methods to visualize newly synthesized proteins in situ

... Following protein lifetime, distribution changes and synthesis rate changes with FUNCAT-PLA ...
Protein Folding I and II
Protein Folding I and II

... The thermal denaturation of Ribonuclease. Solution viscosity increase (open square), near-UV CD at 365 nm (open circle), UV absorbance at 287 nm (open triangles). Filled triangle is a second denaturation after cooling to prove reversibility. ...
Cysteine-mutated FXYD proteins enhance the anti
Cysteine-mutated FXYD proteins enhance the anti

... • Antioxidants fail to prevent cardiovascular morbidity and mortality • Complexity of ROS signalling ...
Poster
Poster

... accepted mechanism that CIP4 interacts with membranes along its concave surface is not consistent with our research that shows this protein is important for protrusion. CIP4-induced filopodial and lamellipodial protrusions would however, be consistent with it interacting with the membrane along its ...
Modelling protein Modelling protein--surface interactions: a surface interactions: a challenge for computations
Modelling protein Modelling protein--surface interactions: a surface interactions: a challenge for computations

... • GGA xc functionals do not correctly describe longrange dispersion • No direct estimate of effects of long-range dispersion in our system • However: for related systems (rare gases on metals): – on-top is the preferred adsorption site – for tested cases, adsorption site preferences are not ...
membrane structure n function
membrane structure n function

... membranes, but the mechanisms involved in most of these cases are different from those used for transferring small molecules. The importance of membrane transport is indicated by the large number of genes in all organisms that code for transport proteins, which make up between 15 and 30% of the memb ...
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G protein–coupled receptor



G protein–coupled receptors (GPCRs), also known as seven-transmembrane domain receptors, 7TM receptors, heptahelical receptors, serpentine receptor, and G protein–linked receptors (GPLR), constitute a large protein family of receptors that sense molecules outside the cell and activate inside signal transduction pathways and, ultimately, cellular responses. Coupling with G proteins, they are called seven-transmembrane receptors because they pass through the cell membrane seven times.G protein–coupled receptors are found only in eukaryotes, including yeast, choanoflagellates, and animals. The ligands that bind and activate these receptors include light-sensitive compounds, odors, pheromones, hormones, and neurotransmitters, and vary in size from small molecules to peptides to large proteins. G protein–coupled receptors are involved in many diseases, and are also the target of approximately 40% of all modern medicinal drugs. Two of the United States's top five selling drugs (Hydrocodone and Lisinopril) act by targeting a G protein–coupled receptor. The 2012 Nobel Prize in Chemistry was awarded to Brian Kobilka and Robert Lefkowitz for their work that was ""crucial for understanding how G protein–coupled receptors function."". There have been at least seven other Nobel Prizes awarded for some aspect of G protein–mediated signaling.There are two principal signal transduction pathways involving the G protein–coupled receptors: the cAMP signal pathway and the phosphatidylinositol signal pathway. When a ligand binds to the GPCR it causes a conformational change in the GPCR, which allows it to act as a guanine nucleotide exchange factor (GEF). The GPCR can then activate an associated G protein by exchanging its bound GDP for a GTP. The G protein's α subunit, together with the bound GTP, can then dissociate from the β and γ subunits to further affect intracellular signaling proteins or target functional proteins directly depending on the α subunit type (Gαs, Gαi/o, Gαq/11, Gα12/13).
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