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Silk-inspired polymers and proteins
Silk-inspired polymers and proteins

... An alternative to this is self-assembly triggered by exposure to chemical stimuli that subsequently lead to a change of the chemical structure of the polymer/protein. For example, as synthesized, silk-inspired triblock copolymers (composed of methyl methacrylate and t-butoxycarbonylAla-Gly-Ala-Gly-e ...
1 Cholesterol synthesis, uptake, and regulation I. Structure and
1 Cholesterol synthesis, uptake, and regulation I. Structure and

... the enzyme activity to drop faster as well, indicating that the key to the regulation of HMG-CoA reductase activity is the amount of free cholesterol inside the cell. Knowing that the cell measured external cholesterol levels according to their affect on internal levels, Brown and Goldstein looked f ...
Synaptonemal complex proteins - Journal of Cell Science
Synaptonemal complex proteins - Journal of Cell Science

... Sequence analysis of the hamster cDNAs encoding Syn1a-d fusion proteins (accession number L32978; Moens et al., 1992) proved that these represent overlapping cDNAs of the hamster homologue of the rat SCP1 gene that encodes a 125 kDa SC protein (Meuwissen et al., 1992). The hamster and rat proteins a ...
Alpha-Domain Structures
Alpha-Domain Structures

... zipper, this is just a special case ...
- Catalyst
- Catalyst

... NLRP3) the inflammasome oligomerizes with an adapator protein and capsapse 1. Once Caspase-1 become apart of the inflammasome it is activated and capable of cleaving cytokines and inducing cell death. ...
Metabolic Adaptation and Protein Complexes in Prokaryotes
Metabolic Adaptation and Protein Complexes in Prokaryotes

... participating. Furthermore, this study places a large number of poorly characterized proteins into networks with hints about their functions. Interestingly, a number of their subnetworks are not only conserved compared to E. coli, but also to S. cerevisiae. Furthermore, biochemical pathways can be m ...
ppt - Erice Crystallography 2006 IT Support
ppt - Erice Crystallography 2006 IT Support

... ribosome into the density map, by a process of flexible fitting. The following two computational methods can be used: • Normal Mode Analysis-guided flexible fitting (NMFF): molecule is modeled as an elastic network (“balls connected with springs”); only small amplitudes allowed. • Real-space refinem ...
Slide 1
Slide 1

... membrane within clathrin-coated pits LDL receptors bind cholesterol-rich LDL particles through the interaction of apoprotein B100 and the LDL receptor Receptor-bound LDL is then carried into the cell via endocytosis. LDL dissociates from the receptor, which is either recycled to the cell surface or ...
Aspartic acid or Glutamic Acid Histidine
Aspartic acid or Glutamic Acid Histidine

... Wild-type Protein shown on the right: Choice B: Explain the difference in entropy (∆So) between the wild-type protein and the Phe57→Val mutant, i.e. why is the overall entropy change larger for the mutant protein. The overall entropy change is higher because the non-polar surface area of Val is smal ...
Plant mitochondria contain the protein translocase subunits TatB
Plant mitochondria contain the protein translocase subunits TatB

... pseudogene. There are however several pieces of evidence to suggest that mtTatC is a funtional gene that encodes a protein. The mtTatC transcript in Arabidopsis is edited at 36 individual sites (Bentolila et al., 2013). There are also several studies demonstrating that the Arabidopsis mtTatC is an e ...
Characterizing the O-glycosylation landscape of human plasma
Characterizing the O-glycosylation landscape of human plasma

... absence of extensive precolumn separation, we found the range of glycoprotein detection to recapitulate that of total protein expression. With glycopeptide enrichment, low copy number (,500) proteins were detected, demonstrating that the method can be applied to complex native samples (Figure 2D). W ...
UBXD4, a UBX-Containing Protein, Regulates the Cell Surface
UBXD4, a UBX-Containing Protein, Regulates the Cell Surface

... the ER and cis-Golgi compartments. Our investigations also showed that the ␣3 subunit is ubiquitinated and that UBXD4 can interfere with its ubiquitination and consequent degradation by the proteasome. Our data suggest that UBXD4 modulates the distribution of ␣3* nAChRs between specialized intracell ...
Replacement Matrices for Transmembrane Proteins
Replacement Matrices for Transmembrane Proteins

... corresponding Π are shown in Figure 2. Early models assumed that every site evolved at the same rate. However, we expect that functionally important regions of proteins change more slowly than unimportant ones. To accommodate rate variation across sites, we make the assumption (assumption 5) that re ...
Proteomic capacity of recent fluorescent dyes for
Proteomic capacity of recent fluorescent dyes for

... global pattern. By opposition, when overlooking minor proteins (Fig. 7(b)), lower and very different variability can be expected following the dye used. In terms of proteome comparisons, analysis are often based on an arbitrary selected ratio factor to detect variations in abundance between different ...
Developing a Novel Means of Observing the
Developing a Novel Means of Observing the

... would like to thank Najua for baring through all the nights I kept our room light on so I could complete my school work. ...
NMR analysis of protein interactions
NMR analysis of protein interactions

... Only five exceed 200 amino acid residues, indicating that the structure determination of large protein complexes by NMR remains challenging. Three of these were obtained by including RDCs to properly define the relative orientation of the molecules [21,32,36]. In particular, the 258 amino acid co ...
PDF - Oxford Academic - Oxford University Press
PDF - Oxford Academic - Oxford University Press

... melanogaster. Thus, the localization of oskar mRNA in the ¯y oocyte de®nes the location of the pole plasm at the posterior pole (6) and later the speci®c posterior expression of nanos in the embryo (7). Likewise, the localization of bicoid mRNA at the anterior pole determines the position of the hea ...
Protein import into the nucleus - Universitätsklinikum des Saarlandes
Protein import into the nucleus - Universitätsklinikum des Saarlandes

... from other members of the family in that it lacks a carboxyterminal membrane attachment, is very abundant, and is located mainly in the nucleus. Interactions with other proteins depend on the state of the nucleotide bound to Ran (Fig. 1) which is regulated by the GTPase activating protein (GAP) and ...
Protein aggregation and amyloid fibril formation prediction software
Protein aggregation and amyloid fibril formation prediction software

... aggregation-prone sequences and most predicted but not yet experimentally verified amyloidogenic regions reside on the surface of the crystallographically solved crystal structures of the relevant amyloidogenic proteins. This is shown in Figs 1 and 2 and, in more detail, in [31]. Several other method ...
Benchmarking homology detection procedures with low complexity
Benchmarking homology detection procedures with low complexity

... it is probable that a training set limited to only proteins with exactly the same domain architecture may be unrealistically restrictive, and unable to represent situations where weak yet significant indication of homology exists. Because of this, we also considered as homologs pairs of proteins wit ...
The Bcl-3 oncoprotein acts as a bridging factor between NF
The Bcl-3 oncoprotein acts as a bridging factor between NF

... Received 15 September 1998; revised 13 January 1999; accepted 14 January 1999 ...
Media: Calcium_Presentation_Final
Media: Calcium_Presentation_Final

... Mca1 and Mca2 • Located 79407 away from QTL on choromosome 7 • membrane proteins capable of responding to mechanical stress over a wide dynamic range of external mechanical stimuli • MCA1 and MCA2 in Arabidopsis thaliana – Paralogs of one another – both involved in mediating Ca2+ uptake ...
Allantoin transport protein, PucI, from Bacillus subtilis
Allantoin transport protein, PucI, from Bacillus subtilis

... and purification of the putative allantoin transport protein, PucI, from Bacillus subtilis. Sequence alignments and phylogenetic analysis confirmed close evolutionary relationships between PucI and membrane proteins of the nucleobase-cation-symport-1 family of secondary active transporters. These in ...
Open access - Bioinformation
Open access - Bioinformation

... diseasewith varying clinical outcomes, disease progression, and responses to specific treatmentsattributed by a wide array of elements ranging from tumorintrinsic genetic factorstoextrinsic ...
Centrosomes as Scaffolds - Albert Einstein College of Medicine
Centrosomes as Scaffolds - Albert Einstein College of Medicine

... assumes different forms and locations depending on the cell cycle phase (Brinkley, 1985). During the G1 phase of the cell cycle the centrosome, or MTOC, consists of a single pair of organelles called centrioles. Each centriole is constructed from nine triplet microtubules and forms at a right angle ...
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G protein–coupled receptor



G protein–coupled receptors (GPCRs), also known as seven-transmembrane domain receptors, 7TM receptors, heptahelical receptors, serpentine receptor, and G protein–linked receptors (GPLR), constitute a large protein family of receptors that sense molecules outside the cell and activate inside signal transduction pathways and, ultimately, cellular responses. Coupling with G proteins, they are called seven-transmembrane receptors because they pass through the cell membrane seven times.G protein–coupled receptors are found only in eukaryotes, including yeast, choanoflagellates, and animals. The ligands that bind and activate these receptors include light-sensitive compounds, odors, pheromones, hormones, and neurotransmitters, and vary in size from small molecules to peptides to large proteins. G protein–coupled receptors are involved in many diseases, and are also the target of approximately 40% of all modern medicinal drugs. Two of the United States's top five selling drugs (Hydrocodone and Lisinopril) act by targeting a G protein–coupled receptor. The 2012 Nobel Prize in Chemistry was awarded to Brian Kobilka and Robert Lefkowitz for their work that was ""crucial for understanding how G protein–coupled receptors function."". There have been at least seven other Nobel Prizes awarded for some aspect of G protein–mediated signaling.There are two principal signal transduction pathways involving the G protein–coupled receptors: the cAMP signal pathway and the phosphatidylinositol signal pathway. When a ligand binds to the GPCR it causes a conformational change in the GPCR, which allows it to act as a guanine nucleotide exchange factor (GEF). The GPCR can then activate an associated G protein by exchanging its bound GDP for a GTP. The G protein's α subunit, together with the bound GTP, can then dissociate from the β and γ subunits to further affect intracellular signaling proteins or target functional proteins directly depending on the α subunit type (Gαs, Gαi/o, Gαq/11, Gα12/13).
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