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Orientation for new graduate students Department of genetics
Orientation for new graduate students Department of genetics

... Identification of Vaccine Candidates for Improvement of Animal Welfare Pasteurella multocida is one of many pathogenic bacteria that causes infectious diseases in various farm animals. Genetic diversity of this bacterium in Thailand has not been fully understood. Investigating of genetic diversity a ...
Slide 1
Slide 1

... facilitate identification of disease genes and rational therapeutic targets. ...
Birth of a new gene on the Y chromosome of Drosophila melanogaster
Birth of a new gene on the Y chromosome of Drosophila melanogaster

... genes essential for male fertility (11, 12). Due to its heterochromatic state, progress in the molecular identification of the Y-linked single-copy genes has been slow. male fertility factor kl5 (kl-5), the first single-copy gene identified, was found serendipitously; it encodes a motor protein (dyn ...
Microbial Community Analysis
Microbial Community Analysis

... All sequences inside this database has a hierarchical taxonomic structure (from phylum to species), which can be applied to the study of microbial communities of various environments. The algorithm used for identification is shown in the picture below. First, a search is done to find similar sequenc ...
The ratio of human X chromosome to autosome
The ratio of human X chromosome to autosome

... by Hammer et al.2. Beyond the use of different ­outgroups (Hammer et al.2 measured divergence to orangutan instead of macaque), each study dealt with the potential confounding effects of natural selection in different ways. To minimize the possibility of linkage to sites affected by natural selectio ...
The Biotechnology Age: Issues and Impacts
The Biotechnology Age: Issues and Impacts

... - Delete a segment of DNA - delete many nucleotides ...
25_DetailLectOutjk_AR
25_DetailLectOutjk_AR

...  If genes in two organisms have closely similar nucleotide sequences, it is highly likely that the genes are homologous. ...
DNA-guided genome editing using the
DNA-guided genome editing using the

... +Dnase I ...
Notes S1 Simple sequence repeats and transposable elements
Notes S1 Simple sequence repeats and transposable elements

... Notes S2 The mitochondrial genome annotation and analysis The mitochondrial genome (mt-genome) of H. irregulare, TC32-1, comprises 114193 bp and has a circular structure and a mean GC-content of 22.8%. Open reading frames (ORFs) longer than 150 bp were identified using ORFfinder, codon usage table 4 ...
BITC1311 Intro to Biotechnology Name
BITC1311 Intro to Biotechnology Name

... d. Mining industry e. Medicine Describe 2 ways in which genetically engineered plants can improve the quality and safety of food production. a. In what way can they increase crop production? b. What makes plants attractive hosts for the production of recombinant proteins? Transgenic animals are bein ...
The rfb cluster, which encodes functions involved in assembling the
The rfb cluster, which encodes functions involved in assembling the

... the bacterial cell wall 7. Two other related proteins are mutated in Typhi, pbpG and STY2118. The gene mpl, encoding murein peptide ligase, also involved in peptidoglycan metabolism, is mutated in SPA 8. The rfb cluster, which encodes functions involved in assembling the O-antigen, has a precise tri ...
Microarray Image Data Analysis
Microarray Image Data Analysis

... category i, each pattern consists of M redundant features, e.g., a microarray can be represented as a pattern consisting of 13574 features corresponding to 13574 effected genes. The goal is to select a small subset of features for “Recognition” ...
P-element-as-a-transgenesis
P-element-as-a-transgenesis

Document
Document

... Genes may show sequence similarity that is limited to a certain region—some parts of a protein will be similar and other parts will be different. Genes may share similar motifs, meaning that they encode regions of similar amino acid sequence that aren't located right next to each other in the linear ...
Document
Document

... fertile = 6-row ...
Monday, Oct - Fall Pima 100
Monday, Oct - Fall Pima 100

... 3. What does the author mean when she states “we are at the beginning of a personalgenomics revolution..”? 4. Wojcicki’s husband Sergey Brin carries a gene that puts him at risk for Parkinson’s disease and there is 50% chance that their child will inherit this gene. Do you feel that this couple shou ...
Slide
Slide

... E-families diverge slowly, but persist for a long periods of time, thus diverging further than the paralogs in N-families N-families undergoes a more dynamic evolution: many duplicate get fixated, many other become pseudogenes. Level of sequence divergence is significantly lower. Duplicate in E-fami ...
Biosketch - UNC School of Medicine - UNC
Biosketch - UNC School of Medicine - UNC

Divining Biological Pathway Knowledge from High
Divining Biological Pathway Knowledge from High

... • Show which genes belong to which gene sets • All genes shown are members of the MAPK signaling pathway ...
BACTERIAL TRANSFORMATION Lab 15
BACTERIAL TRANSFORMATION Lab 15

... * Suspending cells in cold calcium chloride * Heat-shocking the cold cells at 40-42o C. * Using intact plasmids rather than DNA fragments In this experiment we will attempt to transform E. coli with a plasmid, named pGal. This plasmid, developed at UC Berkeley, is one of the more common plasmids use ...
CH12Sec3and4
CH12Sec3and4

1 AP Biology Meiosis lab with Sordaria To observe crossing over in
1 AP Biology Meiosis lab with Sordaria To observe crossing over in

... Meiosis lab with Sordaria To observe crossing over in Sordaria, one must make hybrids between wild type and mutant strains of Sordaria. Wild type Sordaria have black ascospores (+). One mutant strain has tan spores (tn). When mycelia of these two different strains come together and undergo meiosis, ...
hinv1
hinv1

... ■To-do's for H-invitational DB, disease extension part (based on dis ed mtg) – Gene-originated/ oriented research • Comprehensive and extensive automatic text mining with first-level manual curation for disease-related info • Addition of disease-summary type wet data (e.g. exp profiling on pooled sa ...
Extranuclear Inheritance
Extranuclear Inheritance

Composite Transposons
Composite Transposons

... Examples of DNA-intermediate mobile elements • Insertion Sequences (IS) elements in bacteria • P elements in Drosophila • AC/DS (dissociation) elements in maize • AC is a full-length autonomous copy • DS is a truncated copy of AC that is non-autonomous, requiring AC in order to transpose ...
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Pathogenomics

Pathogen infections are among the leading causes of infirmity and mortality among humans and other animals in the world. Until recently, it has been difficult to compile information to understand the generation of pathogen virulence factors as well as pathogen behaviour in a host environment. The study of Pathogenomics attempts to utilize genomic and metagenomics data gathered from high through-put technologies (e.g. sequencing or DNA microarrays), to understand microbe diversity and interaction as well as host-microbe interactions involved in disease states. The bulk of pathogenomics research concerns itself with pathogens that affect human health; however, studies also exist for plant and animal infecting microbes.
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