SCit: web tools for protein side chain
... analysis has brought significant progress in the field of side chain positioning. Usually, the dependence of the conformation of one side chain on that of the backbone is analysed as a function of the f and y angle values of that amino acid (3–6). Due to the number of possible combinations of the f ...
... analysis has brought significant progress in the field of side chain positioning. Usually, the dependence of the conformation of one side chain on that of the backbone is analysed as a function of the f and y angle values of that amino acid (3–6). Due to the number of possible combinations of the f ...
TARGET: a new method for predicting protein subcellular
... localization of the entire proteome (Kumar et al., 2002; Huh et al., 2003); however, such diligent feats are not practicable in all species. Therefore, experimental annotation of protein subcellular localization is not able to keep up with the large number of sequences that continue to emerge from t ...
... localization of the entire proteome (Kumar et al., 2002; Huh et al., 2003); however, such diligent feats are not practicable in all species. Therefore, experimental annotation of protein subcellular localization is not able to keep up with the large number of sequences that continue to emerge from t ...
Novel Multiprotein Complexes Identified in the Hyperthermophilic
... (Genomes Online Database). Consequently there is a tremendous need to determine the function of gene products and identify groups of proteins that work together as complexes in distinct cellular processes. Genome-wide functional analyses suggest that there are 200 –300 core biological functions that ...
... (Genomes Online Database). Consequently there is a tremendous need to determine the function of gene products and identify groups of proteins that work together as complexes in distinct cellular processes. Genome-wide functional analyses suggest that there are 200 –300 core biological functions that ...
It Works! Shake™ Product Info Sheet
... Yellow Pea and Organic Sprouted Brown Rice proteins. This “perfect protein” blend contains a balanced amino acid profile. What does that mean? These two proteins complement each other, with the Organic Sprouted Brown Rice protein providing a complete spectrum of amino acids, including being high in ...
... Yellow Pea and Organic Sprouted Brown Rice proteins. This “perfect protein” blend contains a balanced amino acid profile. What does that mean? These two proteins complement each other, with the Organic Sprouted Brown Rice protein providing a complete spectrum of amino acids, including being high in ...
Measurement of the synthesis of liver
... synthesis by modifying the number of cells committed to this function, but little is known about ways in which the total capacity might thus be restrained. If the alternative explanation is true - that all cells share in these adaptive responses by increasing or decreasing their individual output of ...
... synthesis by modifying the number of cells committed to this function, but little is known about ways in which the total capacity might thus be restrained. If the alternative explanation is true - that all cells share in these adaptive responses by increasing or decreasing their individual output of ...
Essential Cell Biology (3rd ed.)
... proteins. Proteins are the building blocks from which cells are assembled, and they constitute most of the cell’s dry mass. But in addition to providing the cell with shape and structure, proteins also execute nearly all its myriad functions. Enzymes promote intracellular chemical reactions by provi ...
... proteins. Proteins are the building blocks from which cells are assembled, and they constitute most of the cell’s dry mass. But in addition to providing the cell with shape and structure, proteins also execute nearly all its myriad functions. Enzymes promote intracellular chemical reactions by provi ...
A Proteome Reference Map and Proteomic Analysis
... (NCBI) website in 2005. Unlike genome studies, investigations at the proteomic level provide insights into protein abundance and/or post-translational modifications. It is also one of the best methods of investigating basic biological processes such as pathogenesis, physiology, and metabolic mechani ...
... (NCBI) website in 2005. Unlike genome studies, investigations at the proteomic level provide insights into protein abundance and/or post-translational modifications. It is also one of the best methods of investigating basic biological processes such as pathogenesis, physiology, and metabolic mechani ...
Open Reading Frames and Codon Bias in Streptomyces coelicolor
... the S. coelicolor. Examination of the triple content of the DNA rather then just the triple frequency in the coding frame demonstrates that the nucleotide triple bias is not restricted to the coding frame and is in fact a more fundamental property of the DNA of genes containing MORFs. A graph of the ...
... the S. coelicolor. Examination of the triple content of the DNA rather then just the triple frequency in the coding frame demonstrates that the nucleotide triple bias is not restricted to the coding frame and is in fact a more fundamental property of the DNA of genes containing MORFs. A graph of the ...
Active site amino acid sequence of the bovine O6
... methyltransferases is transfer of a methyl group from the modified purine base onto a particular receptor cysteine residue within the methyltransferase molecule itself; the transfer being accompanied by an irreversible inactivation of the methyltransferase function. m6-Gua-DNA methyltransferase acti ...
... methyltransferases is transfer of a methyl group from the modified purine base onto a particular receptor cysteine residue within the methyltransferase molecule itself; the transfer being accompanied by an irreversible inactivation of the methyltransferase function. m6-Gua-DNA methyltransferase acti ...
Phylogeny of Geminiviruses - Journal of General Virology
... whitefly- and leafhopper-transmitted geminiviruses (Thomas et al., 1986). These observations, together with the fact that coat protein is the only protein that has been purified from most geminiviruses, limits the usefulness of a serological approach in a comparative study. We have overcome these pr ...
... whitefly- and leafhopper-transmitted geminiviruses (Thomas et al., 1986). These observations, together with the fact that coat protein is the only protein that has been purified from most geminiviruses, limits the usefulness of a serological approach in a comparative study. We have overcome these pr ...
Complete nucleotide sequences of two soybean
... and PPV (9741 nt; Maiss et al., 1989). The base composition of both strains was 32% adenine, 24% guanine, 18% cytosine and 26% uracil, in agreement with previous observations for G2 (Hill & Benner, 1980b). The base composition is nearly identical to that of TVMV (Domier et al., 1986). Computer trans ...
... and PPV (9741 nt; Maiss et al., 1989). The base composition of both strains was 32% adenine, 24% guanine, 18% cytosine and 26% uracil, in agreement with previous observations for G2 (Hill & Benner, 1980b). The base composition is nearly identical to that of TVMV (Domier et al., 1986). Computer trans ...
PowerPoint
... We’ve got the data, now how do we score/search? First, we need a way to assign numbers to “shades of grey” matches. Genetic code scoring system – This assumes that changes in protein sequence arise from mutations. If only one point mutation is needed to change a given AA to another (at a specific p ...
... We’ve got the data, now how do we score/search? First, we need a way to assign numbers to “shades of grey” matches. Genetic code scoring system – This assumes that changes in protein sequence arise from mutations. If only one point mutation is needed to change a given AA to another (at a specific p ...
1 - Testbank Byte
... 30. A solution of 8 M urea is sometimes used in the isolation of protein molecules. When the solution is prepared by dissolving urea in water at room temperature, it becomes cold. How should the G for this process change if you tried to dissolve urea in the cold room, rather than at room temperatur ...
... 30. A solution of 8 M urea is sometimes used in the isolation of protein molecules. When the solution is prepared by dissolving urea in water at room temperature, it becomes cold. How should the G for this process change if you tried to dissolve urea in the cold room, rather than at room temperatur ...
Powerpoint slides
... In practice, most biomolecular structures (>99% of structures in PDB) are determined using three techniques: - X-ray crystallography (low to very high resolution) Problem: requires crystals; difficult to crystallize proteins by maintaining their native conformation; not all protein can be crystalliz ...
... In practice, most biomolecular structures (>99% of structures in PDB) are determined using three techniques: - X-ray crystallography (low to very high resolution) Problem: requires crystals; difficult to crystallize proteins by maintaining their native conformation; not all protein can be crystalliz ...
Identification of Antigenic Regions of Duck Hepatitis B Virus Core
... plasmid encoding the entire viral genome, indicating that pCI-C plasmid expresses the entire DHBc protein of correct size. No DHBV core gene products were detected in the control cells transfected with empty pCI plasmid. Anti-DHBc humoral response elicited in ducks after DNA or protein immunization ...
... plasmid encoding the entire viral genome, indicating that pCI-C plasmid expresses the entire DHBc protein of correct size. No DHBV core gene products were detected in the control cells transfected with empty pCI plasmid. Anti-DHBc humoral response elicited in ducks after DNA or protein immunization ...
... a TEV protease cleavage site so that design and cloning of linker sequences is not needed. When using expression vectors other than Flexi® Vectors, the protein of interest ORF should first be cloned into the Flexi® Vector to generate the full fusion construct. Unique restriction enzyme sites then ca ...
Hydrogen exchange mass spectrometry for the analysis of protein
... protiated species to one that is deuterated is unidirectional. The deuterium level in the protein sample at any point in the course of the labeling experiment integrates the number of molecules in the sample that had unfolded (or folded) up to that point (Miranker et al., 1993). With continuous labe ...
... protiated species to one that is deuterated is unidirectional. The deuterium level in the protein sample at any point in the course of the labeling experiment integrates the number of molecules in the sample that had unfolded (or folded) up to that point (Miranker et al., 1993). With continuous labe ...
Molecular Analysis of the Prostacyclin Receptor’s Interaction with
... members of the somatostatin receptor (SSTR) family) [10,11,12,13,14]. In addition, through its interaction with the high density lipoprotein (HDL) scavenger receptor class B, type I (SR-BI), PDZK1 is essential for both reverse cholesterol transport ...
... members of the somatostatin receptor (SSTR) family) [10,11,12,13,14]. In addition, through its interaction with the high density lipoprotein (HDL) scavenger receptor class B, type I (SR-BI), PDZK1 is essential for both reverse cholesterol transport ...
Interactome
In molecular biology, an interactome is the whole set of molecular interactions in a particular cell. The term specifically refers to physical interactions among molecules (such as those among proteins, also known as protein-protein interactions) but can also describe sets of indirect interactions among genes (genetic interactions). Mathematically, interactomes are generally displayed as graphs.The word ""interactome"" was originally coined in 1999 by a group of French scientists headed by Bernard Jacq. Though interactomes may be described as biological networks, they should not be confused with other networks such as neural networks or food webs.