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Document
Document

... • C=O group of amino acid #1 form hydrogen bond with the H-N group of amino acid #5 (and C=O #2 with H-N #6). • N-H···O=C • R groups protrude outward from the helical backbone. • 3.6 amino acids per turn. ...
04/03
04/03

... Both enhancers and silencers affect transcription rate. Each has unique DNA sequence for the binding of regulatory proteins. Enhancer sequences contain multiple binding sites for trans-acting regulatory proteins. Enhancers could be located upstream from the promoter, downstream from the gene, or eve ...
UTM EatWell
UTM EatWell

... (70.5 kg) should consume approximately 56 grams of protein per day (70.5 kg x 0.8 = 56 grams protein). Protein recommendations for endurance and strength trained athletes range from 1.2 - 1.7 g/kg (0.5-0.8 g/lb.) body weight per day. These recommended protein intakes can generally be met through die ...
Acid/Base, AAs, Collagen, Hb
Acid/Base, AAs, Collagen, Hb

Say It With DNA - District 196 e
Say It With DNA - District 196 e

... Say It with DNA! Introduction: Having studied the process by which DNA directs the synthesis of proteins, the student will decode a "secret message". To do this, the student will follow the procedure of protein synthesis listed below, much like what happens within one's cells. Complete the following ...
Ribosomal Protein L11 (N-17): sc
Ribosomal Protein L11 (N-17): sc

... The Power to Question ...
Protein Tertiary and Quaternary Structure
Protein Tertiary and Quaternary Structure

... 1. Define the function of β-globin and GFP proteins. The β-globin protein is found in red blood cells and is responsible for transporting oxygen from the lungs to the cells, and CO2 from the cells to the lungs. GFP is a protein in jellyfish that makes the jellyfish “glow” green when they are disturb ...
05 Cliff Note Version
05 Cliff Note Version

... DNA that determines the direction in which complementary nucleotides are added during DNA synthesis. ...
G Protein Coupled Receptors
G Protein Coupled Receptors

... J. Garnier, D.J. Osguthorpe and B Robson Journal of Molecular Biology (1978); 120, 97-120 ...
MJFF Alpha-Synuclein Protein Request Form
MJFF Alpha-Synuclein Protein Request Form

... I agree that pursuant to MJFF's agreement with Proteos, the supplier of Parkinson’s disease-relevant proteins, these proteins may be used only for research purposes, and any commercial use of these proteins requires separate written agreement with the supplier and MJFF. I agree that the proteins wil ...
No Slide Title
No Slide Title

... 3 = the 3 dimensional structure of an entire peptide. Great in detail but vague to generalize. Can reveal the detailed chemical mechanisms of an enzyme. 4. Quaternary Structure 4 two or more peptide chains associated with a protein. Spatial arrangements of subunits. ...
Worksheet2_Solutions
Worksheet2_Solutions

... molecular weight. F b) One method used to prevent disulfide bond interference with protein sequencing procedures is to reduce disulfide bridges and prevent their reformation with the addition of iodoacetic acid. T c) High molecular weight proteins will migrate farther during gel electrophoresis (SDS ...
VIII. PROTEINS, continued
VIII. PROTEINS, continued

... Amino – Acts as a base by picking up H+ ...
here
here

... Molecular biologist often use homology as synonymous with similarity of percent identity. One often reads: sequence A and B are 70% homologous. To an evolutionary biologist this sounds as wrong as 70% pregnant. ...
341- INTRODUCTION TO BIOINFORMATICS Overview of the …
341- INTRODUCTION TO BIOINFORMATICS Overview of the …

... • Running times of Algorithms; upper bounds, lower bounds. • Complexity classes of problems: P, NP, NP-Hard • Graph Traversal Algorithms: – Breadth-first search – Depth-first search • Shortest Path Algorithms – Dijsktra’s Algorithm – Floyd-Warshall algorithm ...
Lecture
Lecture

... Function: Storage of amino acids Examples: Casein, the protein of milk, is the major source of amino acids for baby mammals. Plants have storage proteins in their seeds. Ovalbumin is the protein of egg white, used as an amino acid source for the developing embryo. ...
amino acids
amino acids

... • Prokaryotes lack a nucleus (their DNA is packed in a nucleoid region of the cytoplasm) • Escherichia coli (E. coli) - one of the best studied of all living organisms • E. coli cells are ~0.5µm diameter, 1.5µm long ...
here
here

... amino acids may give rise to different shapes, therefore different functionalities. The shape of protein depends on the sequence of amino acids, the nature of the primary solvent (water or lipid), the concentration of salts, the temperature, and etc. Raswin (Software to study of the protein structur ...
Food Chemistry for 1..
Food Chemistry for 1..

... • Prevent or slow oxidation by – Hydrogenating unsaturated fatty acids (add hydrogens to double bonds) – Vacuum package foods – Packages that block or absorb light ...
FoldIndex©: a simple tool to predict whether a given protein
FoldIndex©: a simple tool to predict whether a given protein

... intrinsically unfolded. It is based solely on the average hydrophobicity of its amino acids and on the absolute value of its net charge. Using as axes these two parameters, proteins determined experimentally to be folded and intrinsically unfolded ones are separated by a straight line described by a ...
Controlling complexity and water penetration in functional de novo
Controlling complexity and water penetration in functional de novo

... [8] that any one part of organism can serve multiple roles and be subject to many selective forces, and not optimized for any one force. Secondly, there is a tendency to develop an interdependency between amino acids relating to a particular function that leads to ever increasing complexity (Figure ...
Tertiary structure
Tertiary structure

... atom. The net result of this process is the formation of an attractive force. This force only occurs if atoms are in close proximity, and the magnitude of the force decreases with sixth power of the separation distance. At very close contact, however, repulsion between electron clouds counteracts th ...
Marvelous Macromolecules
Marvelous Macromolecules

... Many similar or identical building blocks linked by covalent bonds ...
Ming Li Talk about Bioinformatics - the David R. Cheriton School of
Ming Li Talk about Bioinformatics - the David R. Cheriton School of

...  Being homologous means that they have ...
051607
051607

... Chapter 6 3/16, 19, 21, 26, 27, 28 • Catalysis in general – Activation energy (EA or DG‡ ) is a kinetic barrier to reaction – Enzymes lower this barrier (don’t change DG or the equilibrium constant) • Create a new reaction pathway with better DH or (and) better DS ...
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Interactome



In molecular biology, an interactome is the whole set of molecular interactions in a particular cell. The term specifically refers to physical interactions among molecules (such as those among proteins, also known as protein-protein interactions) but can also describe sets of indirect interactions among genes (genetic interactions). Mathematically, interactomes are generally displayed as graphs.The word ""interactome"" was originally coined in 1999 by a group of French scientists headed by Bernard Jacq. Though interactomes may be described as biological networks, they should not be confused with other networks such as neural networks or food webs.
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