Analysis of Y chromosome lineages in native South American
... population is different because haplogroup G frequency is higher than R1b (Fig. 2B). On the other hand, looking at the Y-STRs results a total of 112 different haplotypes were found. We can see haplogroup and haplotype diversity values in Table 1. The percentage of variation observed at the Y-SNPs le ...
... population is different because haplogroup G frequency is higher than R1b (Fig. 2B). On the other hand, looking at the Y-STRs results a total of 112 different haplotypes were found. We can see haplogroup and haplotype diversity values in Table 1. The percentage of variation observed at the Y-SNPs le ...
genotyping single nucleotide polymorphisms located on
... the mitochondrial genome in order to evaluate their usefulness in forensic applications. The results of these primer extension reactions are being analyzed using matrix assisted laser desorption-ionization time of flight mass spectrometry (MALDI-TOF MS) due to its inherent speed and accuracy for typ ...
... the mitochondrial genome in order to evaluate their usefulness in forensic applications. The results of these primer extension reactions are being analyzed using matrix assisted laser desorption-ionization time of flight mass spectrometry (MALDI-TOF MS) due to its inherent speed and accuracy for typ ...
Purpose of Y-chromosome Analysis - College of Letters, Arts, and
... Over 60% of the Bedouin belong to Haplogroup J1. The Arabs have two distinct cultures, sedentary and nomadic. The latter is what the world refers to as the Bedouin. The sedentary Arabs took advantage of oases throughout the Middle East and the Bedouin took advantage of the scarce resources by becomi ...
... Over 60% of the Bedouin belong to Haplogroup J1. The Arabs have two distinct cultures, sedentary and nomadic. The latter is what the world refers to as the Bedouin. The sedentary Arabs took advantage of oases throughout the Middle East and the Bedouin took advantage of the scarce resources by becomi ...
Kuo: HapMap project
... A few common haplotypes among many chromosome regions account for most of the variation in the human genome. ...
... A few common haplotypes among many chromosome regions account for most of the variation in the human genome. ...
A genome-wide association study of chronic otitis media with
... for genotyping in an independent family-based sample: all SNPs with P<10-4 (n=36), and 12 imputed SNPs with P<10-4 on chromosome 15 (near our strongest signal). To date genotyping for 22 of these 48 SNPs has been completed. Results: In primary analyses, the strongest association with COME/ROM was on ...
... for genotyping in an independent family-based sample: all SNPs with P<10-4 (n=36), and 12 imputed SNPs with P<10-4 on chromosome 15 (near our strongest signal). To date genotyping for 22 of these 48 SNPs has been completed. Results: In primary analyses, the strongest association with COME/ROM was on ...
HapMap PROJECT - Faculty of Science at Bilkent University
... sets of samples from two parents and an adult child (each such set is called a trio). – In Japan, 45 unrelated individuals from the Tokyo area provided samples. – In China, 45 unrelated individuals from Beijing provided samples. – Thirty U.S. trios provided samples, which were collected in 1980 from ...
... sets of samples from two parents and an adult child (each such set is called a trio). – In Japan, 45 unrelated individuals from the Tokyo area provided samples. – In China, 45 unrelated individuals from Beijing provided samples. – Thirty U.S. trios provided samples, which were collected in 1980 from ...
Better SNPs for Better Forensics
... the 56 AISNPs that is as good as the FROG39 set. Our experience is that once we have fewer than about 40 AISNPs we lose some of the geographic distinctions we see in these analyses. Of course, many much smaller subsets will give good resolution of widely differing population groups such as West Afri ...
... the 56 AISNPs that is as good as the FROG39 set. Our experience is that once we have fewer than about 40 AISNPs we lose some of the geographic distinctions we see in these analyses. Of course, many much smaller subsets will give good resolution of widely differing population groups such as West Afri ...
Genome browser - Indiana University
... • Current data set – 1 SNP every 279 bp A much more complete variation resource by which the genome-wide map can evaluated ...
... • Current data set – 1 SNP every 279 bp A much more complete variation resource by which the genome-wide map can evaluated ...
Mining Single Nucleotide Polymorphisms from public sequence
... SNPs result from replication errors and DNA damage ...
... SNPs result from replication errors and DNA damage ...
Mining SNPs from public sequence Databases
... SNPs result from replication errors and DNA damage ...
... SNPs result from replication errors and DNA damage ...
Y-Chromosome Marker S28 / U152 Haplogroup
... ”Of interest is the fact that while R-U152 has a clear French-Italian center of weight, the locations exhibiting highest STR variance are Germany and Slovakia, i.e., Central Europe. My guess is that R-U152 originated in Central Europe spreading to the west and south, perhaps with Italo-Celtic speak ...
... ”Of interest is the fact that while R-U152 has a clear French-Italian center of weight, the locations exhibiting highest STR variance are Germany and Slovakia, i.e., Central Europe. My guess is that R-U152 originated in Central Europe spreading to the west and south, perhaps with Italo-Celtic speak ...
Trait Mapping - Nematode bioinformatics. Analysis tools and data
... • problem: genotyping cost precludes using millions of markers simultaneously for an association study • question: how to select from all available markers a subset that captures most mapping information (marker selection, marker prioritization) • depends on the patterns of allelic association (hapl ...
... • problem: genotyping cost precludes using millions of markers simultaneously for an association study • question: how to select from all available markers a subset that captures most mapping information (marker selection, marker prioritization) • depends on the patterns of allelic association (hapl ...
Structural Location of Disease-associated Single
... pockets or voids – more likely than non-disease associated nsSNPs – binding pockets nsSNPs in shallow depressed or convex regions also cause disease - probably because these can also be binding pockets nsSNPs unlikely to be buried in protein – why? ...
... pockets or voids – more likely than non-disease associated nsSNPs – binding pockets nsSNPs in shallow depressed or convex regions also cause disease - probably because these can also be binding pockets nsSNPs unlikely to be buried in protein – why? ...
CSC598BIL675-2016
... • Millions of SNPs How to structure the analysis is based on the same theories… It’s a question of scale and heuristics • Finding SNPs in single gene sequence • Finding SNPs in GWAS studies, other exome sequencing etc… ...
... • Millions of SNPs How to structure the analysis is based on the same theories… It’s a question of scale and heuristics • Finding SNPs in single gene sequence • Finding SNPs in GWAS studies, other exome sequencing etc… ...
Slide 1
... Genomic variation mostly (90%) as single nucleotide differences (2/3 of which are transitions) Non-uniformly distributed (on an average 1 difference for every 1000 bp) Useful as genetic markers ...
... Genomic variation mostly (90%) as single nucleotide differences (2/3 of which are transitions) Non-uniformly distributed (on an average 1 difference for every 1000 bp) Useful as genetic markers ...
Large-scale association studies
... – work with GGT, with 108 entries – first few eigenvectors are population structure components (or common inversions) – ‘EIGENSTRAT’ was first program to do this – Reduce effort further by using just 105 or 104 random SNPs (some loss in quality) ...
... – work with GGT, with 108 entries – first few eigenvectors are population structure components (or common inversions) – ‘EIGENSTRAT’ was first program to do this – Reduce effort further by using just 105 or 104 random SNPs (some loss in quality) ...
presentation_courese_wed_3
... variants within a QTL/GWAS defined region. • PASE - evaluate the effect of amino acid substitution to the hosting protein function • DIPT - to identify causative genes underlying an expression phenotype • Parallelizing computing ...
... variants within a QTL/GWAS defined region. • PASE - evaluate the effect of amino acid substitution to the hosting protein function • DIPT - to identify causative genes underlying an expression phenotype • Parallelizing computing ...
ashgPoster2011ver3.pdf
... SNP. However, a subset of them could actually be functional, and we will search for these to illustrate the power of Galaxy tools for finding candidate functional SNPs. A similar analysis can be done on all SNPs within linkage disequilibrium of the tag SNPs for a more thorough examination of a parti ...
... SNP. However, a subset of them could actually be functional, and we will search for these to illustrate the power of Galaxy tools for finding candidate functional SNPs. A similar analysis can be done on all SNPs within linkage disequilibrium of the tag SNPs for a more thorough examination of a parti ...
Personalized Medicine
... holding all else equal, results in greater F/R gains than going from γ=1 to γ=5 holding all else equal, most of the time. However, for low γ values, increased p does not result in a large increase in F/R. ...
... holding all else equal, results in greater F/R gains than going from γ=1 to γ=5 holding all else equal, most of the time. However, for low γ values, increased p does not result in a large increase in F/R. ...
No Slide Title
... sequence typing of clinical isolates of bacterial species. However, the recent application of random shotgun sequencing to environmental samples makes possible more extensive SNP analysis of cooccurring and co-evolving microbial populations. Tools for visualization of ecogenomics data are in their i ...
... sequence typing of clinical isolates of bacterial species. However, the recent application of random shotgun sequencing to environmental samples makes possible more extensive SNP analysis of cooccurring and co-evolving microbial populations. Tools for visualization of ecogenomics data are in their i ...
Haplogroup G-M201
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In human genetics, Haplogroup G (M201) is a Y-chromosome haplogroup. It is one of two branches of Haplogroup GHIJK, the other being Haplogroup HIJK. Haplogroup G has an overall low frequency in most populations but is widely distributed within ethnic groups of the Old World in the Middle East, Europe, Caucasus, South Asia, western and central Asia, and northern Africa.
