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Plate reader quantification of PCR amplicons with PicoGreen 1) Prepare 8 DNA standards using serial 2:1 dilutions from 10 ng/μl DNA Standard in water in a strip of PCR tubes. Concentration of standards should be as follows (in ng/ml): 10 5 2.5 1.25 0.625 0.312 0.156 0.078 2) Each plate can quantify a maximum of 88 samples. Use multiple plates, if required. 3) Prepare a master mix containing: 199 μl 1X TE for X samples + 8 standards/plate 1 μl PicoGreen fluorescent dye for X samples + 8 standards/plate 4) Vortex and aliquot 195 μl of master mix into X sample wells + 8 standards wells of a black Fluotrac 200 plate (Greiner). 5) Add 5 μl of sample into each sample well, and 5 μl of the standards into each standard well. 6) Attach a clear, optical film seal to the plate and press the seal down firmly with rubber spatula. 7) Vortex the plate for 5 sec. Spin the plate at 930 rcf for 1 min. If any droplets remain on the seal, spin again. 8) Put the plate in the plate reader, use the Multimode Analysis software (Beckman Coulter) to enter the layout of samples/standards in the plate, enter the concentrations of each standard, and run the machine. 9) Check the standard curve as a linear fit, and if satisfied save the resulting Excel output containing sample concentrations to a flashdrive.