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calmodulin-dependent protein… cation binding Ratio in genome metal ion binding protein homodimerization activity Ratio in DE genes unfolded protein binding protein tyrosine kinase activity GTP binding 2-alkenal reductase [NAD(P)] activity calcium ion binding RNA binding electron carrier activity receptor activity DNA binding copper ion binding sequence-specific DNA binding… protein serine/threonine kinase… nucleotide binding zinc ion binding protein binding ATP binding 0 0.02 0.04 0.06 0.08 0.1 Figure S3. Top twenty over-represented GO terms for molecular functions in differentially expressed (DE) photoperiod genes. GO terms involved with DE genes between long- and short-day treatments were analyzed with Goseq [61] to compare their enrichment in DE genes compared with whole genome. The p-value was adjusted with BH method [95].The over-represented genes were defined with adjusted p-value smaller than 0.05. The ratio of each GO term is calculated by comparing the number of genes involved with each GO term with number of genes in the whole group.