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Table S4. Proteins found in complexes of M pneumoniae and found in genome core but not included in proteome core. COG COG046 8 COG069 2 COG225 5 COG046 8 COG046 8 COG061 0 COG029 5 COG225 5 COG031 9 Locus Annotation Core/Attachmen t RecA Protein RecA core Ung core RuvB Uracil-DNA glycosylase Holliday junction ATP-dependent DNA helicase RuvB RecA Protein RecA attachment RecA Mpn34 6 Protein RecA attachment Uncharacterized protein Mpn346 core Cdd Cytidine deaminase Holliday junction ATP-dependent DNA helicase RuvB core Complex 7 Cytidine deamination ribosome complex attachment Ribosome Putative metalloprotease Mpn569 core Dihydrofolate reductase Putative type I restriction enzyme specificity protein Mpn638 (S protein) Putative type I restriction enzyme MpnORFDP R protein part 1 Putative type I restriction enzyme MpnORFDP M protein Putative type I restriction enzyme specificity protein Mpn089 (S protein) Putative type I restriction enzyme specificity protein Mpn507 (S protein) Putative type I restriction enzyme MpnORFDP M protein Putative type I restriction enzyme specificity protein Mpn365 (S protein) Putative type-1 restriction enzyme MpnORFDP R protein part 2 Putative type I restriction enzyme specificity protein Mpn089 (S protein) Putative type I restriction enzyme specificity protein Mpn343 (S protein) Putative type I restriction enzyme specificity protein Mpn365 (S protein) Putative type I restriction enzyme specificity protein Mpn365 (S protein) Putative type I restriction enzyme specificity protein Mpn615 (S protein) Putative type I restriction enzyme attachment Complex 46 Pyruvate dehydrogenase complex RuvB Mpn56 9 COG026 2 FolA COG073 2 COG061 0 COG028 6 Mpn63 8 Mpn34 7 Mpn34 2 COG073 2 Mpn08 9 COG073 2 COG028 6 Mpn50 7 Mpn34 2 COG073 2 COG061 0 Mpn36 5 Mpn34 5 COG073 2 Mpn08 9 COG073 2 Mpn34 3 COG073 2 Mpn36 5 COG073 2 Mpn36 5 COG073 2 COG073 Mpn61 5 Mpn63 core Name DNA Recombination complex (1) DNA Primase complex (2) Complex 100 DNA Recombination complex (2) RNA polymerase complex core Restriction enzyme complex 44 Restriction enzyme complex 44 Restriction enzyme complex 45 core Restriction enzyme complex 46 core core core core Restriction enzyme complex 46 Restriction enzyme complex 46 core Restriction enzyme complex 47 Restriction enzyme complex 47 core Restriction enzyme complex 48 core Restriction enzyme complex 49 core Restriction enzyme complex 49 core Restriction enzyme complex 50 core attachment Restriction enzyme complex 50 Restriction enzyme core 2 8 Mpn34 7 specificity protein Mpn638 (S protein) Putative type I restriction enzyme MpnORFDP R protein part 1 COG061 0 COG081 6 COG073 6 COG361 1 COG148 1 COG026 2 COG073 2 COG038 9 COG022 9 COG081 6 COG021 9 Mpn28 9 Mpn53 7 complex 51 core Restriction enzyme complex 51 AlaS Alanyl-tRNA synthetase attachment Complex 4 AcpS Mpn52 5 Mpn24 1 Holo -[acyl carrier protein] synthase Uncharacterized protein MG349 homolog Uncharacterized protein MG103 homolog core Complex 13 core Complex 24 core Complex 25 FolA attachment Complex 36 core Complex 41 core Complex 78 MsrB Dihydrofolate reductase Putative type I restriction enzyme specificity protein Mpn289 (S protein) Uncharacterized protein MG360 homolog Peptide methionine sulfoxide reductase core Complex 78 AlaS Mpn52 1 Alanyl-tRNA synthetase Uncharacterized tRNA/rRNA methyltransferase MG346 homolog core Complex 99 core Complex 112
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