Download 1471-2164-12-234-S2 - digital

MOLECULAR FUNCTION GO terms
GO:0003674: Molecular_Function
GO class ID
Definition
Count
Fraction
GO:0005488
GO:0003824
GO:0005515
GO:0016787
GO:0003676
GO:0005198
GO:0000166
GO:0016740
GO:0003723
GO:0005215
GO:0030528
GO:0008233
GO:0003677
GO:0008092
GO:0016301
GO:0004871
GO:0004672
GO:0045182
GO:0005509
GO:0005102
GO:0008135
GO:0030234
GO:0004872
GO:0003774
GO:0003779
GO:0003700
GO:0008289
GO:0030246
GO:0004721
GO:0004518
GO:0016209
GO:0003682
GO:0005216
GO:0005326
binding
catalytic activity
protein binding
hydrolase activity
nucleic acid binding
structural molecule activity
nucleotide binding
transferase activity
RNA binding
transporter activity
transcription regulator activity
peptidase activity
DNA binding
cytoskeletal protein binding
kinase activity
signal transducer activity
protein kinase activity
translation regulator activity
calcium ion binding
receptor binding
translation factor activity, nucleic acid binding
enzyme regulator activity
receptor activity
motor activity
actin binding
transcription factor activity
lipid binding
carbohydrate binding
phosphoprotein phosphatase activity
nuclease activity
antioxidant activity
chromatin binding
ion channel activity
neurotransmitter transporter activity
3400
1720
1551
702
561
550
351
331
295
277
176
169
164
145
136
78
77
65
65
61
61
59
58
56
44
43
31
24
20
20
19
13
13
4
19.51%
9.87%
8.90%
4.03%
3.22%
3.16%
2.01%
1.90%
1.69%
1.59%
1.01%
0.97%
0.94%
0.83%
0.78%
0.45%
0.44%
0.37%
0.37%
0.35%
0.35%
0.34%
0.33%
0.32%
0.25%
0.25%
0.18%
0.14%
0.11%
0.11%
0.11%
0.07%
0.07%
0.02%
BIOLOGICAL PROCESS GO terms
GO:0008150 Biological_Process
GO class ID
Definition
Count
Fraction
GO:0008152
GO:0019538
GO:0009058
GO:0007275
GO:0016043
metabolism
protein metabolism
biosynthesis
development
cell organization and biogenesis
nucleobase, nucleoside, nucleotide and nucleic
acid metabolism
protein biosynthesis
transport
organelle organization and biogenesis
morphogenesis
cell communication
cell differentiation
cell cycle
response to stress
signal transduction
catabolism
reproduction
embryonic development
cytoskeleton organization and biogenesis
transcription
death
cell death
generation of precursor metabolites and energy
protein modification
growth
carbohydrate metabolism
ion transport
lipid metabolism
response to external stimulus
protein transport
cell proliferation
response to biotic stimulus
cell homeostasis
behavior
DNA metabolism
cell-cell signaling
response to abiotic stimulus
amino acid and derivative metabolism
response to endogenous stimulus
cell growth
mitochondrion organization and biogenesis
cell recognition
regulation of gene expression, epigenetic
viral life cycle
secondary metabolism
cytoplasm organization and biogenesis
2999
1213
1118
1079
915
12.44%
5.03%
4.64%
4.48%
3.80%
780
3.24%
659
634
465
426
390
372
366
315
293
259
243
243
242
239
221
221
215
208
179
150
146
135
129
126
103
101
100
94
93
82
70
52
48
36
28
23
21
19
7
1
2.73%
2.63%
1.93%
1.77%
1.62%
1.54%
1.52%
1.31%
1.22%
1.07%
1.01%
1.01%
1.00%
0.99%
0.92%
0.92%
0.89%
0.86%
0.74%
0.62%
0.61%
0.56%
0.54%
0.52%
0.43%
0.42%
0.41%
0.39%
0.39%
0.34%
0.29%
0.22%
0.20%
0.15%
0.12%
0.10%
0.09%
0.08%
0.03%
0.00%
GO:0006139
GO:0006412
GO:0006810
GO:0006996
GO:0009653
GO:0007154
GO:0030154
GO:0007049
GO:0006950
GO:0007165
GO:0009056
GO:0000003
GO:0009790
GO:0007010
GO:0006350
GO:0016265
GO:0008219
GO:0006091
GO:0006464
GO:0040007
GO:0005975
GO:0006811
GO:0006629
GO:0009605
GO:0015031
GO:0008283
GO:0009607
GO:0019725
GO:0007610
GO:0006259
GO:0007267
GO:0009628
GO:0006519
GO:0009719
GO:0016049
GO:0007005
GO:0008037
GO:0040029
GO:0016032
GO:0019748
GO:0007028
CELLULAR COMPONENT GO terms
GO class ID
GO:0005623
GO:0005622
GO:0005737
GO:0005634
GO:0005829
GO:0005840
GO:0005739
GO:0005856
GO:0005886
GO:0005576
GO:0005654
GO:0005811
GO:0005783
GO:0005730
GO:0005694
GO:0005815
GO:0005794
GO:0016023
GO:0005578
GO:0005773
GO:0005615
GO:0005764
GO:0005768
GO:0000228
GO:0005635
GO:0005929
GO:0005777
GO:0009536
GO:0030312
GO:0005618
GO:0005575 Cellular_Component
Definition
cell
intracellular
cytoplasm
nucleus
cytosol
ribosome
mitochondrion
cytoskeleton
plasma membrane
extracellular region
nucleoplasm
lipid particle
endoplasmic reticulum
nucleolus
chromosome
microtubule organizing center
Golgi apparatus
cytoplasmic membrane-bound vesicle
extracellular matrix (sensu Metazoa)
vacuole
extracellular space
lysosome
endosome
nuclear chromosome
nuclear membrane
cilium
peroxisome
plastid
external encapsulating structure
cell wall
Count
5114
3956
2404
714
632
557
474
420
265
171
147
118
100
91
77
48
47
43
35
34
33
27
20
20
14
10
9
7
5
5
Fraction
24.34%
18.83%
11.44%
3.40%
3.01%
2.65%
2.26%
2.00%
1.26%
0.81%
0.70%
0.56%
0.48%
0.43%
0.37%
0.23%
0.22%
0.20%
0.17%
0.16%
0.16%
0.13%
0.10%
0.10%
0.07%
0.05%
0.04%
0.03%
0.02%
0.02%