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UNIVERSITI MALAYSIA PERLIS Peperiksaan Pertengahan Semester 1 Sidang Akademik 2010/2011 Ogos 2010 ERT 106-Biochemistry [Biokimia] Masa : 1 jam Please make sure that this question paper has FIVE (5) printed pages including this front page before you start the examination. [Sila pastikan kertas soalan ini mengandungi LIMA (5) muka surat yang bercetak termasuk muka hadapan sebelum anda memulakan peperiksaan ini.] This question paper has FOUR (4) questions. Answer ALL questions in the provided space. Each question contributes 25 marks. [Kertas soalan ini mengandungi EMPAT (4) soalan. Jawab SEMUA soalan dalam ruang yang disediakan. Setiap soalan memberikan 25 markah.] Name :....................................................................................... Matrix No. : ..................................................................................... SULIT Question 1 a. “Life is a complex phenomenon”. Explain this statement. [10 marks] ANSWER All organisms are mainly composed of organic [carbon-based] molecules that have complex, 3-dimensional shapes Growth and development in living processes involve thousand of chemical reactions that interact, collide, and rearrange to form new biomolecules b. Describe 3 major differences between prokaryotic and eukaryotic cells. [15 marks] ANSWER Differences Structure PROKARYOTES Cell wall semi rigid composed of peptidoglycan Respiration Anaerobicfermentation [lacking mitochondrion] Movement Tumbling rotation of flagellum EUKARYOTES Aerobic respiration [Kreb’s cycle]has mitochondrion Cilia, flagella and pseudopod movement. These microtubules have the classic 9+2 pattern Cell wall has plasma membrane that is composed of lipid bilayer and glycocalyx on the external surface – lacks peptidoglycan 2 Reproduction[DNA] DNA in single strand and floating freely without a nucleus; asexual binarry fission DNA in chromosomes inside nucleus; sexual zygote udergoes meiosis and mitosis SULIT SULIT Question 2 a) Substances such as salts are easily dissolved in water. With the aid of diagram or structure, explain the solvent properties of water that enable such situation. [15 Marks] - The polar nature of water makes it an excellent solvent for polar and ionic materials that are water loving (hydophillic) - An ion immersed in a polar solvent such as water attracts the the oppositely charged ends of the solvent dipoles and becomes surrounded by one or more concentric shells of orientated solvent molecules. - The ion becoming solvated or hydrated when water is the solvent - The capacity of solvent to reduce the attractive forces between ions is indicated by its dielectric constant. - Water has a very large dielectric constant. (5 points x 2 marks = 10 marks) (5 marks for diagram) b) Calculate the ratio of lactic acid and lactate required in a buffer system of pH 5.5. The pKa of lactic acid is 3.86. [10 Marks] Answer The equation pH = pKa + log [lactate] ………… 2 [lactic acid] Can be rearranged to Log [lactate] = pH – pKa ……………2 [lactic acid] = 5.5 – 3.86 = 1.64 …….2 Therefore the required ratio is [lactate] = antilog 1.64 …………….2 [lactic acid] = 43.6 …………… 2 3 SULIT SULIT Question 3 a. Differentiate between the cis-isomers and trans-isomers of unsaturated lipids. [10 marks] ANSWER Unsaturated: contain one or more double bonds cis: identical groups are on the same side of a double bond Trans: identical groups are on opposite sides of a double bond Cis Trans b. i. Name two fatty acids found in abundance in living organisms. [5 marks] ANSWER Refer p.333 of Mckee textbook: oleic acid and linoleic acid ii. Write and explain the abbreviation symbols used for these two fatty acids. [10 marks] ANSWER Abbre. Symbol for oleic acid – 18:1Δ9 The number to the left of the colon is the total number of carbon atoms and the number to the right is the number of double bonds. This symbol indicates that this acid contains 18 carbon atoms; 1 indicates that it is a single-bonded monounsatutated acid; Δ9 signifies that there are 8 carbons between the carboxyl [-COOH] group and the double bond, i.e. the double bond occurs between carbons 9 and 10. Abbre. Symbol for linoleic acid – 18:2 Δ9,12 This is a double-bond poyunsaturated fatty acid having 18 carbon atoms and double bonds between carbons 9 and 10; and carbons 12 and 13. The double bonds are separated by the methylene groups [-CH2-]. 4 SULIT SULIT Question 4 a. Proteins are composed of 20 standard amino acids. Briefly describe with simple diagram the general structure of amino acid. [5 Markah] b. Amino acids are classified according to their capacity to interact with water. Based on this criterion, explain briefly the classes of amino acids. [20 Marks] 4 classes of amino acids : a) neutral nonpolar - amino acid contain hydrocarbon R groups b) neutral polar - amino acids have functional group capable of forming hydrogen bonding, so easily interact with water (hydrophilic) c) acidic - amino acids contain carboxylate R group. So negatively charge at physiological pH d) basic - amino acids contain amine R group. So positively charge at physiological pH 5 SULIT