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Evolution The Origin of Species Classification PowerPoint Lectures for Biology, Seventh Edition Neil Campbell and Jane Reece Lectures by Chris Romero Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The origin of new species, or speciation • Species: Is a Latin word meaning “kind” or “appearance” – Is at the focal point of evolutionary theory, because the appearance of new species is the source of biological diversity • Evolutionary theory – Must explain how new species originate in addition to how populations evolve Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The Biological Species Concept • The biological species concept – Defines a species as a population or group of populations whose members have the potential to interbreed in nature and produce viable, fertile offspring but are unable to produce viable fertile offspring with members of other populations Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Reproductive Isolation • Reproductive isolation – Is the existence of biological factors that impede members of two species from producing viable, fertile hybrids – Is a combination of various reproductive barriers Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Reproductive barriers • barriers impede mating or hinder fertilization if mating does occur Habitat isolation Behavioral isolation Temporal isolation Individuals of different species Mechanical isolation Mating attempt HABITAT ISOLATION TEMPORAL ISOLATION BEHAVIORAL ISOLATION (b) MECHANICAL ISOLATION (g) (d) (e) (f) (a) (c) Figure 24.4 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Some barriers reduces hybrid vitality and fertility if mating does occur Gametic isolation Reduce hybrid fertility Reduce hybrid viability Hybrid breakdown Viable fertile offspring Fertilization REDUCED HYBRID VIABILITY GAMETIC ISOLATION REDUCED HYBRID FERTILITY HYBRID BREAKDOWN (k) (j) (m) (l) (h) (i) Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Once geographic separation has occurred – One or both populations may undergo evolutionary change during the period of separation A. harrisi Figure 24.6 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings A. leucurus Habitat Differentiation and Sexual Selection – Can also result from the appearance of new ecological niches Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Adaptive Radiation • Adaptive radiation – Is the evolution of diversely adapted species from a common ancestor upon introduction to new environmental opportunities Figure 24.11 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Darwin’s Finches Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The Hawaiian archipelago – Is one of the world’s great showcases of adaptive radiation Dubautia laxa 1.3 million years MOLOKA'I KAUA'I MAUI 5.1 million years O'AHU LANAI 3.7 million years Argyroxiphium sandwicense HAWAI'I 0.4 million years Dubautia waialealae Figure 24.12 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Dubautia scabra Dubautia linearis Changes in Spatial Pattern • Substantial evolutionary change – Can also result from alterations in genes that control the placement and organization of body parts Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Homeotic genes – Determine such basic features as where a pair of wings and a pair of legs will develop on a bird or how a flower’s parts are arranged Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The products of one class of homeotic genes called Hox genes – Provide positional information in the development of fins in fish and limbs in tetrapods Chicken leg bud Zebrafish fin bud Figure 24.18 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Region of Hox gene expression The evolution of vertebrates from invertebrate animals – Was associated with alterations in Hox genes Hypothetical vertebrate ancestor (invertebrate) with a single Hox cluster First Hox duplication 1 Most invertebrates have one cluster of homeotic genes (the Hox complex), shown here as colored bands on a chromosome. Hox genes direct development of major body parts. 2 A mutation (duplication) of the single Hox complex occurred about 520 million years ago and may have provided genetic material associated with the origin of the first vertebrates. 3 In an early vertebrate, the duplicate set of genes took on entirely new roles, such as directing the development of a backbone. Hypothetical early vertebrates (jawless) with two Hox clusters Second Hox duplication Figure 24.19 Vertebrates (with jaws) with four Hox clusters Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings 4 A second duplication of the Hox complex, yielding the four clusters found in most present-day vertebrates, occurred later, about 425 million years ago. This duplication, probably the result of a polyploidy event, allowed the development of even greater structural complexity, such as jaws and limbs. 5 The vertebrate Hox complex contains duplicates of many of the same genes as the single invertebrate cluster, in virtually the same linear order on chromosomes, and they direct the sequential development of the same body regions. Thus, scientists infer that the four clusters of the vertebrate Hox complex are homologous to the single cluster in invertebrates. What is evolution? • One common misconception about evolution is that individual organisms evolve, in the Darwinian sense, during their lifetimes • Natural selection acts on individuals, but populations evolve Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Natural Selection • Different traits make some organisms more successful in reproduction than other organisms – Results in certain alleles being passed to the next generation in greater proportions – Examples: Pesticide resistance in insects- If some insects have a natural resistance to pesticides, then those insects won’t die when sprayed and will have a chance to pass on their genes. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Genetic variations in populations – Contribute to evolution Figure 23.1 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Gene Pools and Allele Frequencies • A population – Is a localized group of individuals that are capable of interbreeding and producing fertile offspring MAP AREA • Fairbanks Fortymile herd range • Whitehorse Figure 23.3 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The gene pool – Is the total of genes in a population at any one time – Consists of all alleles in all individuals of the population Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Mendelian inheritance – Preserves genetic variation in a population Generation 1 CW CW genotype CRCR genotype Plants mate Generation 2 All CRCW (all pink flowers) 50% CR gametes 50% CW gametes Come together at random Generation 3 25% CRCR 50% CRCW 50% CR gametes 25% CWCW 50% CW gametes Come together at random Generation 4 25% CRCR Figure 23.4 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings 50% CRCW 25% CWCW Alleles segregate, and subsequent generations also have three types of flowers in the same proportions Why so much variation? • Two processes, mutation and sexual recombination – Produce the variation in gene pools that contributes to differences among individuals Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Mutation • Mutations – Are changes in the nucleotide sequence of DNA – Cause new genes and alleles to arise Figure 23.6 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Sexual Selection • Sexual selection – Is natural selection for mating success – Can result in sexual dimorphism, marked differences between the sexes in secondary sexual characteristics Figure 23.15 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Which is better? Sexual or Asexual Reproduction? • Sexual reproduction – Produces fewer reproductive offspring than asexual reproduction, a so-called reproductive handicap Sexual reproduction Asexual reproduction Generation 1 Female Female Generation 2 Male Generation 3 Generation 4 Figure 23.16 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings If sexual reproduction is a handicap, why has it persisted? – It produces genetic variation that may aid in disease resistance Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings What is common ancestry? How is it determined? – Morphological, biochemical, and molecular comparisons to infer evolutionary relationships Figure 25.2 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Inferred from: • Fossil Evidence • Morphological Evidence • Molecular Evidence Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Biologists draw on the fossil record – Which provides information about ancient organisms Figure 25.1 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The Fossil Record • Sedimentary rocks – Are the richest source of fossils – Are deposited into layers called strata 1 Rivers carry sediment to the ocean. Sedimentary rock layers containing fossils form on the ocean floor. 2 Over time, new strata are deposited, containing fossils from each time period. 3 As sea levels change and the seafloor is pushed upward, sedimentary rocks are exposed. Erosion reveals strata and fossils. Younger stratum with more recent fossils Figure 25.3 Older stratum with older fossils Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The fossil record – Is based on the sequence in which fossils have accumulated in such strata • Fossils reveal – Ancestral characteristics that may have been lost over time Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Though sedimentary fossils are the most common – Paleontologists study a wide variety of fossils (c) Leaf fossil, about 40 million years old (b) Petrified tree in Arizona, about 190 million years old (a) Dinosaur bones being excavated from sandstone (d) Casts of ammonites, about 375 million years old (f) Insects preserved whole in amber Figure 25.4a–g (g) Tusks of a 23,000-year-old mammoth, frozen whole in Siberian ice Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings (e) Boy standing in a 150-million-year-old dinosaur track in Colorado Morphological and Molecular Homologies • In addition to fossil organisms – history can be inferred from certain morphological and molecular similarities among living organisms • In general, organisms that share very similar morphologies or similar DNA sequences – Are likely to be more closely related than organisms with vastly different structures or sequences Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Evaluating Molecular Homologies • Systematists use computer programs and mathematical tools – When analyzing comparable DNA segments from different organisms 1 Ancestral homologous DNA segments are identical as species 1 and species 2 begin to diverge from their common ancestor. 1 C C A T C A G A G T C C 2 C C A T C A G A G T C C A C G G A T A G T C C A C T A G G C A C T A T C A C C G A C A G G T C T T T G A C T A G Deletion 2 3 4 Figure 25.6 Deletion and insertion mutations shift what had been matching sequences in the two species. Homologous regions (yellow) do not all align because of these mutations. Homologous regions realign after a computer program adds gaps in sequence 1. 1 C C A T C A G A G T C C 2 C C A T C A G A G T C C G T A Insertion 1 C C A T C A 2 C C A T G T A 1 2 A G T C C C C A T C C A T G T A C A G A G T C C C A A G T C C C A G A G T C C Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Figure 25.7 Classification with evolutionary history • Taxonomy – Is the ordered division of organisms into categories based on a set of characteristics used to assess similarities and differences Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Binomial Nomenclature • Binomial nomenclature – Is the two-part format of the scientific name of an organism – Was developed by Carolus Linnaeus Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The binomial name of an organism or scientific epithet – Is latinized – Is the genus and species Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Hierarchical Classification • Linnaeus also introduced a system – For grouping species in increasingly broad categories Panthera Species pardus Panthera Genus Felidae Family Carnivora Order Class Phylum Kingdom Figure 25.8 Domain Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Mammalia Chordata Animalia Eukarya Linnaeus’ classification system: Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The Linnaean classification system has limitations. • Linnaeus taxonomy doesn’t account for molecular evidence. – The technology didn’t exist during Linneaus’ time. – Linnaean system based only on physical similarities. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Linking Classification Species Panthera Figure 25.9 Felidae Order Family Panthera pardus (leopard) Genus • depict evolutionary relationships In branching phylogenetic trees Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Mephitis mephitis (striped skunk) Mephitis Lutra lutra (European otter) Lutra Mustelidae Carnivora Canis familiaris (domestic dog) Canis lupus (wolf) Canis Canidae Each branch point – Represents the divergence of two species Leopard Domestic cat Common ancestor Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings “Deeper” branch points – Represent progressively greater amounts of divergence Wolf Leopard Common ancestor Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Domestic cat – The length of a branch reflects the number of genetic changes that have taken place in a particular DNA or RNA sequence in that lineage Figure 25.12 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Cladistics is classification based on common ancestry. • Phylogeny is the evolutionary history for a group of species. – evidence from living species, fossil record, and molecular data – shown with branching tree diagrams Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Derived characters are traits shared in different degrees by clade members. – more closely related species share more derived characters 1 Tetrapoda clade 2 Amniota clade 3 Reptilia clade 4 Diapsida clade 5 Archosauria clade FEATHERS & TOOTHLESS BEAKS. SKULL OPENINGS IN FRONT OF THE EYE & IN THE JAW OPENING IN THE SIDE OF THE SKULL SKULL OPENINGS BEHIND THE EYE EMBRYO PROTECTED BY AMNIOTIC FLUID FOUR LIMBS WITH DIGITS DERIVED CHARACTER Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The three domains in the tree of life are Bacteria, Archaea, and Eukarya. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Domain Bacteria: includes prokaryotes in the kingdom Bacteria. – one of largest groups on Earth – classified by shape, need for oxygen, and diseases Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Domain Archaea includes prokaryotes in the kingdom Archaea. – cell walls chemically different from bacteria – differences discovered by studying RNA – known for living in extreme environments Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Bacteria and archaea can be difficult to classify. – transfer genes among themselves outside of reproduction – blurs the line bridge to transfer DNA between “species” – more research needed to understand prokaryotes Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Prokaryotes thrive almost everywhere – Including places too acidic, too salty, too cold, or too hot for most other organisms Figure 27.1 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Domain Eukarya includes all eukaryotes. – kingdom Protista Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Domain Eukarya includes all eukaryotes. – kingdom Protista – kingdom Plantae Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Prokaryotes play crucial roles in the biosphere Prokaryotes are so important to the biosphere that if they were to disappear – The prospects for any other life surviving would be dim – Play a major role in chemical recycling (many are decomposers Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings But they can also be dangerous! • Prokaryotes cause about half of all human diseases – Lyme disease is an example Figure 27.16 5 µm Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Domain Eukarya includes all eukaryotes. – kingdom Protista – kingdom Plantae – kingdom Fungi Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings • Domain Eukarya includes all eukaryotes. – kingdom Protista – kingdom Plantae – kingdom Fungi – kingdom Animalia Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings But what about Viruses? Are they alive or not? • Recall that bacteria are prokaryotes – With cells much smaller and more simply organized than those of eukaryotes • Viruses – Are smaller and simpler still Virus Bacterium Animal cell Animal cell nucleus 0.25 m Figure 18.2 Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Recall the Characteristics of Life: • A virus has a genome but can reproduce only within a host cell! It is NOT living, but exhibits many of the characteristics of life. Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings The Origin of HIV • Analysis shows that HIV – Is descended from viruses that infect chimpanzees and other primates • A comparison of HIV samples from throughout the epidemic – Has shown that the virus has evolved in a remarkable fashion Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Phylogenetic Tree of HIV-1 Strain Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings