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Brock Biology of Microorganisms Twelfth Edition Madigan / Martinko Chapter 16 Dunlap / Clark Bacteria: Gram-Positive and Other Bacteria Lectures by Buchan & LeCleir Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings I. Overview of Gram-Positive and Other Bacteria Bacteria has many other phyla, including Gram-positive bacteria Large group of mostly chemoorganotrophic Cyanobacteria Oxygeneic phototrophs that have evolutionary roots near those of grampositive bacteria Phylogenetically early-branching phyla Such as Aquifex Other morphologically distinct groups Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings II. Gram-Positive Bacteria and Actinobacteria 16.1 Nonsporulating Gram-Positive Bacteria 16.2 Endospore-Forming Gram-Positive Bacteria 16.3 Cell-Wall-Less Gram-Positive Bacteria: The Mycoplasmas 16.4 Actinobacteria: Coryneform and Propionic Acid Bacteria 16.5 Actinobacteria: Mycobacterium 16.6 Filamentous Actinobacteria: Streptomyces and Relatives Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings II. Gram-Positive Bacteria and Actinobacteria Gram-positive bacteria are a large and diverse group Previously divided into two groups High G+C (Actinobacteria), >50% G+C Low G+C <50% G+C Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.1 Nonsporulating Gram-Positive Bacteria Key genera: Staphylococcus, Micrococcus, Streptococcus, Lactobacillus, Sarcina Staphylococcus and Micrococcus Aerobic, cocci Resistant to reduced water potential Tolerate high salt Many species are pigmented Staphylococcus aureus Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.1 Nonsporulating Gram-Positive Bacteria Sarcina Obligate anaerobes Extremely acid tolerant Can inhabit and grow in stomachs of monogastric animals Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.1 Nonsporulating Gram-Positive Bacteria Streptococcus Homofermentative Play important roles in production of buttermilk, silage, and other products Some species are pathogenic Lactococcus: genera of dairy significance Enterococcus: genera of fecal origin Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.1 Nonsporulating Gram-Positive Bacteria Lactobacillus Rod-shaped Common in dairy products Resistant to acidic conditions Grow in pH as low as 4 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.1 Nonsporulating Gram-Positive Bacteria Listeria Gram-positive coccobacilli Form chains 3–5 cells long Require full oxic or microoxic conditions for growth Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Distinguishing Features of Major Gram-Positive Cocci Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Staphylococcus aureus Figure 16.1 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Sarcina Figure 16.2 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Differentiation of the Principal Genera of Lactic Acid Bacteria Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Gram-Positive Cocci Lactococcus lactis Streptococcus sp. Figure 16.3 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Differential Characteristics Complete hemolysis (β-hemolysis): due to hemolysins (e.g. streptolysin O or S). Antigenic groups are divided based on the presence of specific carbohydrate antigens. Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Lactobacillus species Lactobacillus acidophilus Lactobacillus brevis Lactobacillus delbrueckii Figure 16.4 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.2 Endospore-Forming Gram-Positive Bacteria Key Genera: Bacillus, Clostridium, Sporosarcina, Heliobacterium Distinguished on the basis of cell morphology, shape and cellular position of endospore Generally found in soils Endospores are advantageous for soil microorganisms Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Major Genera of Endospore-Forming Bacteria Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.2 Endospore-Forming Gram-Positive Bacteria Bacillus and Paenibacillus Many produce extracellular hydrolytic enzymes that break down polymers Many bacilli produce antibiotics Paenibacillus popilliae and Bacillus thuringiensis produce insect larvicides Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Characteristics of Representative Species of Bacilli Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Toxic Parasporal Crystal in Bacillus thuringiensis Figure 16.6 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.2 Endospore-Forming Gram-Positive Bacteria Clostridium Lack a respiratory chain, anaerobic Some Clostridia perform Stickland reactions Metabolism of pair of amino acids Mainly found in anaerobic pockets in the soil Also live in mammalian intestinal tract Some are pathogenic; cause diseases such as botulism, tetanus, and gas gangrene Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Characteristics of Some Groups of Clostridia Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Clostridium Species and Endospore Location Clostridium cadaveris Terminal endospores Clostridium sporogenes Subterminal endospores Clostridium bifermentans Central endspores Figure 16.5 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.2 Endospore-Forming Gram-Positive Bacteria Sporosarcina Unique among endospore formers because cells are cocci instead of rods Strictly aerobic, spherical cells Common in soils Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Sporsarcina ureae Figure 16.7 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.2 Endospore-Forming Gram-Positive Bacteria Heliobacteria Phototrophic gram-positive bacteria Anoxygenic phototrophs Produce bacteriochlorophyll g Strict anaerobes Reside in soils and also in highly alkaline environments (i.e., soda lakes and alkaline soils) Have nitrogen-fixation capabilities Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Cells and Endospores of Heliobacteria Heliobacillus mobilis Heliophilum fasciatum Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Heliobacterium gestii Figure 16.8 16.3 Cell-Wall-Less Gram-Positive Bacteria: Mycoplasmas Key genera: Mycoplasma, Spiroplasma Lack cell walls Some of the smallest organisms capable of autonomous growth Parasites that inhabit animal and plant hosts Key components of peptidoglycan are missing - Muramic acid and diaminopimelic acid Mycoplasma cells are pleomorphic Cells may be cocci or filaments of various lengths Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Major Characteristics of Mycoplasmas Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.3 Cell-Wall-Less Gram-Positive Bacteria: Mycoplasmas Spiroplasma Helical or spiral-shaped wall-less cells Rotary screw motility Isolated from ticks, hemolymph and gut of insects, vascular plant fluids, and insects that feed on the fluids Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Mycoplasma mycoides Figure 16.9 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings “Fried Egg” Appearance of Mycoplasma Colonies on Agar Dense central core Figure 16.10 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Spiroplasma from Hemolymph of D. pseudoobscura “Sex ratio” spiroplasma Figure 16.11 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.4 Actinobacteria: Coryneform & Propionic Acid Bacteria Key genera: Corynebacterium, Arthrobacter, Propionibacterium Actinobacteria form their own phylum - High G+C gram-positive bacteria Over 30 taxonomic families Rod to filamentous, usually aerobic Mostly harmless commensals (Mycobacterium are notable exceptions) Valuable for antibiotics and certain fermented dairy products Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.4 Actinobacteria: Coryneform & Propionic Acid Bacteria Corynebacterium Gram-positive, aerobic, non-motile, rod-shaped Form club-shaped, irregular-shaped, or V-shaped cell arrangements Extremely diverse Arthrobacter Primarily soil organisms Remarkably resistant to dessication and starvation Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.4 Actinobacteria: Coryneform & Propionic Acid Bacteria Propionic Acid Bacteria First discovered in Swiss cheese Gram-positive anaerobes Have metabolic strategy called secondary fermentation Obtain energy from fermentation products produced by other bacteria - Propionibacterium: lactic acid - Propionigenium: succinate Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Snapping Division in Arthrobacter crystallopoietes Figure 16.12 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Cell Division in Arthrobacter crystallopoietes Figure 16.13 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Stages in Life Cycle of Arthrobacter globiformis Rods to coccoid forms Figure 6.14 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.5 Actinobacteria: Mycobacterium Mycobacterium Rod-shaped organisms, exhibit acid-fastness First discovered by Robert Koch Not readily stained by Gram stain because of high surface lipid content Cells are somewhat pleomorphic Separated into two groups: slow and fast growers Classified into three groups based on pigmentation Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Acid-Fast Stain (Ziehl-Neelsen Stain) Basic fuchsin and phenol – heating – washing (DW) – acid alcohol –wash – methylene blue - Acid-fast organism: red - Non-acid-fast organism: blue Figure 16.15 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Characteristic Colony Morphology of Mycobacteria M. tuberculosis colony Colony of virulent M. tuberculosis at an early stage M. avium colonies Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Figure 16.16 Structure of Cord Factor, a Mycobacterial Glycolipid 6,6’-dimycolyltrehalose Figure 16.17 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.6 Filamentous Actinobacteria: Streptomyces & Others Key genera: Streptomyces, Actinomyces Filamentous, gram-positive bacteria Produce mycelium analogous to mycelium of filamentous fungi Over 500 species of Streptomyces are recognized Streptomyces spores are called conidia (in the aerial mycelium sporophores) Primarily soil microorganisms, responsible for earthy odor of soil (geosmins) Strict aerobes that produce many extracellular enzymes Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.6 Filamentous Actinobacteria: Streptomyces & Others Streptomyces 50% of all isolated Streptomyces produce antibiotics Over 500 distinct antibiotics produced by Streptomyces Some produce more than one antibiotic Genomes are typically quite large (8 Mbp and larger) Knowledge of the ecology of Streptomyces remains poor Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Nocardia Figure 16.18 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Spore-Bearing Structures of Actinomycetes Streptomyces sp. Streptomyces sp. Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Figure 16.19 Spore Formation in Streptomyces Figure 16.20 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Colonies of Streptomyces Figure 16.22 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Antibiotics from Streptomyces Streptomyces coelicolor and red-colored antibiotic undecylprodigiosin Figure 16.23 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Some Common Antibiotics Synthesized by Streptomyces Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings III. Cyanobacteria and Prochlorophytes 16.7 Cyanobacteria 16.8 Prochlorophytes Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.7 Cyanobacteria Key genera: Synechococcus, Oscillatoria, Nostoc Oxygenic phototrophs Impressive morphological diversity Unicellular (divide by binary fission) Unicellular (divide by multiple fission) Filamentous (with heterocysts) Filamentous (nonheterocystous) Branching filamentous Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Genera and Grouping of Cyanobacteria Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Cyanobacteria: the Five Major Morphologies Gloeothece Dermocarpa Oscillatoria Figure 16.24a-c Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Cyanobacteria: the Five Major Morphologies Anabaena Fischerella Figure 16.24d-e Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.7 Cyanobacteria Most species are obligate phototrophs - chlorophyll a and phycobilins ( Red algae also has chlorophyll a and phycobilin) Many cyanobacteria produce potent neurotoxins Widely distributed in terrestrial, freshwater, and marine habitats Can be phototrophic component of lichens Often form extensive crusts in desert soils Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Thylakoids in Cyanobacteria Synecoccus lividus Figure 16.25 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Thylakoids in Cyanobacteria Figure 16.25 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.7 Cyanobacteria Gas vesicles are found in many cyanobacteria Help maintain buoyancy Keep cell in water column where there is light Heterocysts are rounded, enlarged cells Anoxic environment inside heterocyst Site for nitrogen fixation Nitrogenase is sensitive to oxygen Lack photosystem II and low in phycobilin pigments Unable to fix CO2 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.7 Cyanobacteria Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.7 Cyanobacteria Cyanophycin A copolymer of Asp and Arg Nnitrogen storage product Also an energy reserve - arginine dihydrolase system (arginine deiminase, ornithine carbamoyl transferase, and carbamate kinase) * Arg + H2O → citrulline + NH3 citrulline + Pi → ornithine + carbomoyl phosphate carbomoyl phosphate + ADP → ATP + NH3 + CO2 (Net: Arg + ADP + Pi + H2O → ornithine +2NH3 + CO2 + ATP) Many cyanobacteria display gliding motility Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.7 Cyanobacteria Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.8 Prochlorophytes Key genera: Prochloron, Prochlorothrix, and Prochlorococcus Oxygenic phototrophs Prochloron was first prochlorophyte discovered - contains chlorophylls a and b - No phycobilins Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Electron Micrograph of the Prochlorophyte Prochloron Prochloron Figure 16.28 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.8 Prochlorophytes Prochlorothrix Have chlorophylls a and b and lacks phycobilins Prochlorococcus Found in euphotic zone of the open oceans The smallest and most abundant photosynthetic microorganism on Earth (?) 0.5–0.8 micrometers in diameter 105 Prochlorococcus per milliliter of seawater Produce divinyl chlorophyll a (not the true chlorophyll a), chlorophyll b, and alpha-carotene Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Filamentous Prochlorothrix and Acaryochloris Contain chlorophyll a and b Phase Contrast Electron Micrograph of Thin Section Acaryochlorus, Thin Section Prochlorothrix Figure 16.29 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings IV. Chlamydia 16.9 The Chlamydia Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.9 The Chlamydia Key genera: Chlamydia, Chlamydophila Obligately parasitic with poor metabolic capacities One of the simplest biochemical capacities of all known bacteria Currently a cause of one of the leading sexually transmitted diseases Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.9 The Chlamydia Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.9 The Chlamydia Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Chlamydia Chlamydia psittaci Figure 16.30 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Infection Cycle of Chlamydia Figure 16.31a Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Infection Cycle of Chlamydia Human Chlamydial Infection Figure 16.31b Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings V. Planctomyces/ Pirellula 16.10 Planctomyces/Pirellula: A phylogenetically unique stalked bacterium Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.10 Planctomyces: A Phylogenetically Unique Bacterium Key genera: Planctomyces, Pirellula, Gemmata Planctomyces is a budding bacterium Facultative aerobic chemoorganotroph Stalked Primarily aquatic Extensive cell compartmentalization including a membrane-enclosed nuclear structure Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Planctomyces maris Figure 16.32 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Gemmata: a Nucleated Bacterium Figure 16.33 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings VI. The Verrucomicrobia 16.11 Verrucomicrobium and Prosthecobacter Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.11 Verrucomicrobium and Prosthecobacter Key genera: Verrucomicrobium Form cytoplasmic extensions called prosthecae Produce two prosthecae per cell Aerobic to facultative aerobic bacteria Inhabit freshwater and marine environments as well as forest and agricultural soils Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Verrucomicrobium spinosum Figure 16.34 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings VII. The Flavobacteria 16.12 Bacteroides and Flavobacterium 16.13 Acidobacteria Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.12 Bacteroides and Flavobacterium Key genera: Bacteroides, Flavobacterium Bacteroides Obligately anaerobic Numerically dominant bacterium in human intestinal tract Synthesize sphingolipids, which are normally found in mammalian tissues Flavobacteria Found primarily in aquatic environments Aerobic, nutritionally restricted, frequently yellow-pigmented Other genera are psychrophilic (i.e., Polaribacter) Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Sphingolipids A number of compounds Glycerol Sphingosine Carboxy group of fatty acid Figure 16.35 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.13 Acidobacteria Key genera: Acidobacterium, Geothrix, Holophaga Gram-negative chemoorganotrophs Abundant in soils, freshwater habitats, hot spring microbial mats, wastewater treatment reactors, and sewage sludge 16S rRNA gene evidence of up to 6 major groups Most are still uncultured Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings VIII. The Cytophaga Group 16.14 Cytophaga and Relatives Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.14 Cytophaga and Relatives Key genera: Cytophaga, Flexibacter, Rhodothermus and Salinibacter Long, slender gram-negative rods Move by gliding Many Cytophaga digest polysaccharides such as cellulose or chitin Some are fish pathogens Cytophaga and Sporocytophaga are obligately aerobic and probably account for much of the oxic cellulose digestion Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Cytophaga and Sporocytophaga Streak of Cytophaga Species Hydrolyzing Agar in Petri Dish Colonies of Sporocytophaga Growing on Cellulose Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Figure 16.36a-b Cytophaga and Sporocytophaga Cytophaga hutchinsonii Sporocytophaga myxococcoides Figure 16.36c-d Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.14 Cytophaga and Relatives Flexibacter differs from Cytophaga because they require complex media for growth and are not cellulolytic Common in freshwater saprophytes and soils None have been identified as pathogenic Rhodothermus and Salinibacter Gram-negative, red or yellow pigmented, obligately aerobic Salinibacter is the most salt tolerant of all Bacteria Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings IX. Green Sulfur Bacteria 16.15 Chlorobium and Other Green Sulfur Bacteria Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.15 Chlorobium and Other Green Sulfur Bacteria Key genera: Chlorobium, Chlorobaculum, Prosthecochloris, Chlorochromatium Green sulfur bacteria are phylogenetically distinct, non-motile, anoxygenic phototrophs Bacteriochlorophyll a + either bacteriochlorophylls c, d, or e Utilize H2S as an electron donor and oxidize it to SO42 Autotrophy is supported using a reversal in the citric acid cycle Have chlorosomes: oblong bacteriochlorophyll-rich bodies bounded by a thin membrane (a lipid monolayer) Green- and brown-colored species exist Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Green and Brown Chlorobia Chlorobaculum tepidum Chlorobaculum phaeobacteroides Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Phototrophic Green Sulfur Bacteria Chlorobium limicola Chlorobium clathratiforme Figure 16.37 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Chlorobaculum tepidum Chlorosome Chlorobaculum tepidum: a thermophilic green sulfur bacterium Figure 16.38 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Chlorobaculum tepidum chlorosomes Figure 16.38 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Genera and Characteristics of Green Sulfur Bacteria Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.15 Chlorobium and Other Green Sulfur Bacteria Green sulfur bacteria inhabit anoxic environments rich in H2S Some green sulfur bacteria form consortia Involves the green sulfur bacterium and a chemoorganotrophic bacterium Phototrophic member is called epibiont Epibiont is physically attached to nonphototrophic cell Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.15 Chlorobium and Other Green Sulfur Bacteria Chlorochromatium aggregatum Differential contrast Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings DAPI-stained Stained with phylogenetic probe 16.16 Spirochetes Key genera: Spirochaeta, Treponema, Cristispira, Leptospira, Borrelia Gram-negative, motile, and tightly coiled Widespread in aquatic environments and in animals Have endoflagella: located in the periplasm of the cell Classified into 8 genera based on habitat, pathogenicity, phylogeny, and morphological and physiological characteristics Also found in the rumen of animals Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Morphology of Spirochetes Same magnification Spirochaeta stenostrepta Spirochaeta plicatilis Figure 16.41 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Motility in Spirochetes Figure 16.42 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.16 Spirochetes Spirochaeta Free-living, anaerobic and facultatively anaerobic spirochetes Cristispira Found in nature, primarily in the crystalline style of mollusks No Cristipara have yet been cultured Treponema Anaerobic host-associated spirochetes that are commensal or parasites of humans Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.16 Spirochetes Borrelia Majority are human or animal pathogens Borrelia burgdorferi is the causative agent of Lyme disease B. burgdorferi has a linear chromosome Leptospira and Leptonema Strictly anaerobic spirochetes Rodents are the natural host of Leptospira Cause of leptospirosis in humans Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Cristispira Figure 16.44 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Treponema and Borrelia Regularly coiled Irregularly coiled Treponema saccharophilum Borrelia burgdorferii Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Figure 16.44 XI. Deinococci 16.17 Deinococcus and Thermus Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.17 Deinococcus and Thermus Thermus Thermophilic, aerobic, organotrophic Source of Taq DNA polymerase Deinococcus Gram-positive, aerobic, organotrophic Most are red or pink due to carotenoids Resist UV radiation, gamma radiation, and desiccation Resistant to most mutagenic agents Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Radiation-Resistant Coccus Deinococcus radiodurans Outer membrane layer Nucleoid Figure 16.45 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings XII. The Green Nonsulfur Bacteria 16.18 Chloroflexus and Relatives Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.18 Chloroflexus and Relatives Key genera: Chloroflexus, Heliothrix, Roseiflexus Chloroflexus Thermophilic filamentous bacteria Form thick microbial mats in neutral to alkaline hot springs Grows best phototrophically, can grow photoautotrophically Bacteriochlorophylls a and c Has chlosomes Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.18 Chloroflexus and Relatives Thermomicrobium Chemotrophic, strictly aerobic, gram-negative rod Grow optimally in complex media at 75oC Membrane lipids - Have 1,2-dialcohols (instead of glycerol) - Have neither ester nor ether linkage Lack peptidoglycan Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings The Unusual Lipids of Thermomicrobium 13-methyl-1,2-nonadecaediol of Thermomicrobium roseum Fatty acid Fatty acid Phosphate Phosphate Bilayer membrane Figure 16.46 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Green Nonsulfur Bacteria Chloroflexus aurantiacus Oscillochloris sp. Chloronema sp. Right: C. Aurantiacus Left: Roseiflexus sp. Figure 16.47 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings XIII. Hyperthermophilic Bacteria 16.19 Thermotoga and Thermodesulfobacterium 16.20 Aquifex, Thermocrinis, and Relatives Hyperthermophile: optimal temperature is > 80oC Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.19 Thermotoga and Thermodesulfobacterium Key genera: Thermotoga, Thermodesulfobacterium Thermotoga Rod-shaped, hyperthermophile (can grow at 90°C) Anaerobic, fermentative, chemoorganotroph 20% of genes likely originated from Archaea (contains many genes that show strong homology to genes from hyperthermophilic Archaea) Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Hyperthermophilic Bacteria Thermotoga maritima (temperature optimum: 80oC) Aquifex pyrophilus (temperature optimum: 85oC) Figure 16.48 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.19 Thermotoga and Thermodesulfobacterium Thermodesulfobacterium Thermophilic (temp. opt. 70oC), sulfate-reducing bacterium Strict anaerobe Unable to utilize acetate as electron donor Lipids - Ether-linked (instead of ester-linked) - Contain C17 hydrocarbon along with some fatty acids (instead of phytanyl, the polyisoprenoid C20 hydrocarbon in Archaea) Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Thermodesulfobacterium Figure 16.49 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.20 Aquifex, Thermocrinis, and Relatives Key genera: Aquifex and Thermocrinis Aquifex Obligately chemolithotrophic hyperthermophile - H2, So, and S2O32- as electron donors - O2 or NO3- as electron acceptors - Reverse TCA cycle for CO2 fixation Most thermophilic of all Bacteria - Opt. temp. 85°C, max. temp. 95°C 1.55 Mbp genome Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Hyperthermophilic Bacteria Thermotoga maritima (temperature optimum: 80oC) Aquifex pyrophilus (temperature optimum: 85oC) Figure 16.48 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.20 Aquifex, Thermocrinis, and Relatives Thermocrinis Chemolithotrophic hyperthermophile - H2, So, and S2O32- as electron donors - O2 as electron acceptor - Reverse TCA cycle for CO2 fixation Opt. temp. 80°C Grow as filamentous pink “streamers” in nature - In static culture: grow as individual rod-shaped cells Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings Thermocrinis ruber 85°C outflow, Yellow Stone National Park Figure 16.50 Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings XIV. Nitrospira and Deferribacter 16.21 Nitrospira, Deferribacter, and Relatives Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.21 Nitrospira, Deferribacter, and Relatives Key genera: Nitrospira, Deferribacter Relatively little is known about these organisms Chemolithotrophs or chemoorganotrophs Thermophiles or mesophiles Identified by ribosomal RNA sequencing Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.21 Nitrospira, Deferribacter, and Relatives Nitrospira group Nitrospira - Chemolithotroph: NO2- as an electron donor - Horizontal transfer of genes involved in nitrification from nitrifying Proteobacteria to Nitrospira? (or vice versa?) - Most of nitrite oxdized in nature is probably due to the activities of Nitrospira (∵ Nitrospira is much more common than Nitrobacter in nature ) Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.21 Nitrospira, Deferribacter, and Relatives Nitrospira group Leptospirillum - Iron-oxidizing chemolithotroph - Responsible for much of the acid mine drainage Thermodesulfovibrio - Thermophilic sulfate-reducing bacterium - inhabits hot spring microbial mats Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings 16.21 Nitrospira, Deferribacter, and Relatives Deferribacter group Deferribacter - Obligately anaerobic - Anaerobic respiration with a variety of electron acceptors (e.g. Fe3+ and Mn4+ ) Geovibrio - Obligately anaerobic - Anaerobic respiration with a variety of electron acceptors (e.g. Fe3+ and Mn4+ ) Flexistipes - Obligately anaerobic, fermentative Copyright © 2009 Pearson Education Inc., publishing as Pearson Benjamin Cummings