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36000 transcriptional regulator, XRE family 34000 transposase 32000 CDS 30000 CDS 28000 phage protein 26000 phage tail fibre assembly protein phage protein phage protein 24000 phage tail fiber-like protein 22000 phage protein 20000 phage protein phage protein 18000 phage tail length determinator 16000 phage small terminase subunit phage head completion protein phage protein phage protein phage protein phage protein phage holin phage lysozyme phage protein phage protein 14000 phage major capsid protein, P2 family 12000 phage capsid scaffolding protein 10000 phage terminase ATPase subunit 8000 phage protein phage capsid portal protein 6000 phage replication initiation protein A 4000 phage repressor phage transcriptional regulator, Cro-like protein Putative regulator for prophage phage protein phage C protein 2000 phage protein CDS phage integrase transcriptional regulator, LysR family Aeromonas salmonicida subsp. salmonicida A449-Pro1 38,386 bp 38000 8000 10000 12000 phage protein phage protein 6000 transposase subunit 2 4000 transposase subunit 1 2000 phage protein phage protein phage protein phage integrase Aeromonas salmonicida subsp. salmonicida A449-Pro 2-18,624 bp 14000 16000 18000 18000 20000 22000 24000 26000 28000 30000 32000 34000 phage protein 16000 phage tail fiber assembly protein phage protein phage protein 14000 phage tail fiber-like protein 12000 Phage major capsid protein, P2 phage terminase subunit phage head completion protein phage protein phage protein phage protein phage protein phage protein phage holin phage lysin phage protein phage protein phage protein phage tail length determinator phage protein phage protein phage protein 10000 phage capsid scaffolding protein 8000 phage terminase ATPase subunit 6000 phage protein phage capsid portal protein 4000 phage protein 2000 prophage transcriptional regulator bacteriophage protein phage protein phage transcriptional protein phage integrase phage integrase IS630-family transposase Aeromonas salmonicida subsp. salmonicida A449-Pro3-38,675 bp 36000 38000 12000 14000 putative transposase putative phage host specificity protein 10000 putative phage protein putative phage protein 8000 putative phage tail protein putative gene transfer agent 6000 putative secreted protein 4000 phage capsid protein putative phage protease 2000 phage portal protein putative N-acetyltransferase phage terminase large subunit Aurantiomonas GTA-14,997 bp 16000 10000 chloroglycine hydrolase transcriptional regulator 8000 hypothetical protein 6000 transcriptional regulator 4000 phage antirepressor ERCC4-type nuclease 2000 phage replication protein transcriptional regulator transcriptional regulator integrase Bacillus sp. B14905-Prophage 1-18,188 bp 12000 14000 16000 18000 10000 12000 14000 16000 18000 20000 22000 CDS 8000 phage lysis protien XlyB 6000 portal conserved domain 4000 phage terminase large subunit 2000 phage replication protein replication protein phage antirepressor integrase phage related protein repressor Bacillus sp. B14905-Prophage 3-23,390 bp 24000 26000 4000 6000 8000 COG0542 ATPases with chaperone activity, ATP-binding subunit COG0791 Cell wall-associated hydrolases (invasion-associated proteins) COG4653 Predicted phage phi-C31 gp36 major capsid-like protein 2000 phage prohead protease, HK97 family protein Phage portal protein Phage DNA Packaging Protein Erythrobacter sp. NAP1-13,519 bp-GTA? 10000 12000 14000 COG4540 Phage P2 baseplate assembly protein gpV 36000 38000 40000 60000 62000 64000 66000 68000 42000 44000 46000 48000 50000 COG5004 P2-like prophage tail protein X phage-related tail protein 40000 prophage MuMc02, tail tape measure protein, TP901 family 38000 phage-related contractile tail sheath protein 36000 COG0840 Methyl-accepting chemotaxis protein 34000 Virulence-associated protein 32000 COG4540 Phage P2 baseplate assembly protein gpV 30000 prophage LambdaW5, baseplate assembly protein W, putative Baseplate J-like protein Phage tail protein I 28000 COG4387 Mu-like prophage protein gp36 COG5005 Mu-like prophage protein gpG 26000 COG4388 Mu-like prophage I protein prophage MuSo2, F protein, putative 24000 sensor histidine kinase 58000 COG4383 Mu-like prophage protein gp29 22000 esponse regulator receiver:Transcriptional regulatory protein, 56000 putative phage-related protein 20000 Cell wall-associated hydrolases (invasion-associated proteins) 54000 Mu-like phage gp27 18000 COG5281 Phage-related minor tail protein 52000 N-acetylmuramoyl-L-alanine amidase Mu-like prophage protein gp16 16000 major capsid protein, HK97 family 50000 Phage portal protein, HK97 family:Phage portal protein COG3740 Phage head maturation protease 48000 14000 Adenine specific DNA methyltransferase, D12 class COG1525 Micrococcal nuclease (thermonuclease) homologs 46000 12000 COG5004 P2-like prophage tail protein X phage-related tail protein 44000 10000 COG2842 Uncharacterized ATPase, putative transposase COG0640 Predicted transcriptional regulators 8000 prophage MuMc02, tail tape measure protein, TP901 family 6000 Transposase and inactivated derivative COG1475 Predicted transcriptional regulators phage-related contractile tail sheath protein 42000 prophage MuSo1, transcriptional regulator, Cro/CI family protein COG3423 Predicted transcriptional regulator 4000 COG0840 Methyl-accepting chemotaxis protein phage head portal protein Phage DNA Packaging Protein 2000 Virulence-associated protein prophage LambdaW5, baseplate assembly protein W, putative Baseplate J-like protein Glycosyl transferase, family 51:Penicillin-binding protein, transpeptidase domain Phage tail protein I Fulvimarina pelagi HTCC2506-66,477 nt 52000 28000 30000 32000 34000 36000 CDS 26000 phage-related protein (tail protein) 24000 bacteriophage-related protein 22000 serine protease (phage related-protein, ClpP family) 20000 phage-related head portal protein 18000 phage-terminase large subunit 16000 site-specific recombinase (phage integrase family) 14000 phage associated-antirepressor 12000 phage-like element PBSX protein 10000 bacteriophage-related protein 8000 bacteriophage-related protein 6000 transcriptional repressor of PBSX genes transcriptional regulator transcriptional repressor of PBSX genes transcriptional regulator 4000 phage-like element PBSX protein 2000 site-specific recombinase serine protein kinase Geobacillus kaustophilus Prophage- 33,152 bp 38000 28000 30000 32000 34000 36000 38000 40000 42000 44000 46000 48000 membrane protein membrane protein 26000 phage tail tape measure protein 24000 HNH endonuclease family protein 22000 phage portal protein 20000 phage small terminase 18000 phage terminase large subunit 16000 membrane protein 14000 membrane protein 12000 phage DNA modification methylase 10000 conserved hypothetical protein-possibly DNA-me thyltransferase 8000 metallo-beta-lactamase domain protein 6000 RecT family protein 4000 LuxR family transcriptional regulator protein 2000 HNH endonuclease family protein secreted protein phage integrase family protein MerR family transcriptional regulator protein Gramella forsetii KT0803-49,512 nt 50000 Hahella chejuensis Prophage 3-28,446 nt 24000 26000 probable phage protein probable phage protein 22000 probable phage protein uncharacterized phage Mu protein gp47-like protein 20000 probable phage protein 18000 probable phage protein 16000 probable phage protein probable phage protein DnaK suppressor protein 14000 probable phage protein 12000 probable phage small terminase subunit probable phage head completeion protein 10000 phage major capsid protein, P2 family 8000 Flagellar biosynthesis/type III secretory pathway protein 6000 Mu-like prophage FluMu protein gp28 4000 phage portal protein, PBSX family 2000 putative exonuclease Integrase Hahella chejuensis Prophage 1-27,588 nt 28000 14000 16000 Bacteriophage head-tail adaptor bacteriophage TP901-1 ORF40-like protein 12000 phage portal protein, HK97 family phage prohead protease, HK97 family phage major capsid protein, HK97 family 10000 Phage terminase-like protein, large subunit 8000 phage terminase, small subunit, putative, P27 family 6000 Restriction endonuclease Histone acetyltransferase HPA2/related acetyltransferase predicted transcriptional regulator containing the CopG/Arc/MetJ DNA-binding domain Plasmid stabilization system protein 4000 probable phage protein 2000 group II intron-encoding maturase integration host factor, alpha subunit predicted transcriptional regulator Integrase Transposase and inactivated derivatives Transposase and inactivated derivatives Hahella chejuensis Prophage 2-18,002 18000 probable phage protein 26000 28000 probable phage protein probable phage protein 24000 uncharacterized phage Mu protein gp47-like protein 22000 Phage-related tail protein 20000 probable phage protein probable phage protein 18000 probable phage protein 16000 probable phage head completeion protein 14000 probable phage small terminase subunit 12000 phage major capsid protein, P2 family 10000 probable phage capsid scaffolding protein 8000 Mu-like prophage FluMu protein gp28 6000 phage portal protein, PBSX family 4000 putative exonuclease 2000 probable phage protein Integrase CDS Hahella chejuensis Prophage 3 30000 32000 28000 30000 32000 34000 phage antiterminator 26000 phage repressor prophage antirepressor 24000 replication protein 22000 protelomerase 20000 parA 18000 DNA adenine methylase 16000 phage tail protein 14000 phage tail protein 12000 phage tail tape-measure protein 10000 tail shealth protein tail tube protein 8000 tail fiber protein 6000 baseplate assembly protein V baseplate assembly protein baseplate assembly protein phage tail protein phage tail protein 4000 major capsid 2000 portal protein terminase large subunit Halomonas aquamarina prophage HAP-1-39,245 nt 36000 38000 12000 14000 serine acetyltransferase 10000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 8000 putative phage tail minor protein 6000 putative phage tail-head adaptor major tail protein, TP901-1 family 4000 phage prohead protease, HK97 family major capsid protein, HK97 family putative portal protein 2000 putative large terminase 3-oxoacyl-(acyl carrier protein) synthase Loktanella vestfoldensis SKA53 GTA-14,202 bp 16000 20000 CcmE/CycJ protein 18000 periplasmic sensor signal transduction histidine kinase 16000 Propeptide, PepSY amd peptidase M4 two component transcriptional regulator, winged helix family 14000 chaperone DnaJ domain protein 12000 gene transfer agent (GTA) orfg15 10000 rhodobacter capsulatus gene transfer agent (GTA) orfg13 putative phage cell wall peptidase, NlpC/P60 family 8000 gene transfer agent-like protein phage major tail protein, TP901-1 family KEGG: rpb:RPB_3464 gene transfer agent (GTA) orfg10 6000 phage major capsid protein, HK97 family 4000 phage prohead protease, HK97 family phage portal protein, HK97 family 2000 Terminase penicillin-binding protein, 1A family Maricaulis maris MCS10 GTA-16,193 bp 22000 22000 head-tail adaptor, putative Alcohol dehydrogenase GroES domain protein 20000 major capsid protein, HK97 family protein 18000 Portal protein, HK97 family protein 16000 Terminase 14000 beta-ketoacyl synthase [Rhodobacter sphaeroides ATCC 17029]-like aminodeoxychorismate lyase [Dinoroseobacter shibae DFL 12]-like dehydrogenase with different specificities [Parvibaculum lavamentivorans DS-1]-like 12000 RplI, ribosomal protein L9 [Parvibaculum lavamentivorans DS-1]-like Ribosomal protein S6 [alpha proteobacterium HTCC2255]-like 10000 LysR-family transcriptional regulator [Stappia aggregata IAM 12614]-like 8000 putative S-formylglutathione hydrolase protein (carboxyl esterase??) 6000 Alcohol dehydrogenase (groES) 4000 Putative membrane transporter 2000 TRAP transporter Acetate--CoA ligase [Roseovarius sp. TM1035]-like phosphoglucosamine mutase [Roseovarius sp. TM1035]-like Sargasso Sea BAC-27,775 bp-GTA-like 24000 26000 Enterobacteriophage Mu-36,717 bp 34000 36000 sensory box sensor/GGDEF/EAL domain protein 32000 prophage MuSo2, tail fiber protein, putative 30000 prophage MuSo2, 43 kDa tail protein, putative prophage MuSo2, baseplate assembly protein V COG4381 Mu-like prophage protein gp46 COG3299 Uncharacterized homolog of phage Mu protein gp47 28000 prophage MuSo2, DNA circulation protein, putative COG3941 Mu-like prophage protein 26000 COG4518 Mu-like prophage FluMu protein gp41 24000 prophage MuSo2, tail sheath protein, putative 22000 COG4387 Mu-like prophage protein gp36 prophage MuSo2, virion morphogenesis protein, putative 20000 prophage MuSo2, protein Gp32, putative CDS prophage MuSo2, major head subunit, putative 18000 prophage MuSo2, F protein, putative 16000 COG4383 Mu-like prophage protein gp29 14000 prophage MuSo2, portal protein, putative 12000 C4-type zinc finger protein, DksA/TraR family protein 10000 prophage MuSo2, positive regulator of late transcription, putative 8000 COG4382 Mu-like prophage protein gp16 6000 prophage MuSo2, DNA transposition protein, putative transposase, putative 4000 prophage MuSo2, transcriptional regulator, Cro/CI family protein 2000 diguanylate cyclase (GGDEF domain) putative tellurite resistance protein-related protein methyl-accepting chemotaxis protein MutT/NUDIX family protein Marinomonas Mu-like prophage-37,598 nt 38000 10000 12000 14000 16000 18000 20000 22000 24000 probable transcriptional regulator two-component response regulator CDS 8000 Putative replication protein 6000 putative esterase putative phage protein 4000 N-acetylmuramoyl-L-alanine amidase, putative prophage PSPPH06, putative tail tube protein prophage PSPPH06, putative tail sheath protein 2000 tail fiber protein H, putative transcriptional regulator aminopeptidase, putative Marinomonas sp. MED 121-Fragment-23,996 bp 26000 20000 Mu-like prophage major head subunit gpT 18000 putative I protein 16000 possible bacteriophage Mu G-like protein 14000 bacteriophage Mu GP30-like protein 12000 COG4383 Mu-like prophage protein gp29 10000 COG4373 Mu-like prophage FluMu protein gp28 8000 Mu-like phage gp27 6000 lysozyme, putative 4000 Mu-like prophage FluMu host-nuclease inhibitor protein Gam 2000 prophage MuSo1, DNA transposition protein, putative Transposase and inactivated derivative COG2252 Permeases COG2932 Predicted transcriptional regulator COG3423 Predicted transcriptional regulator Mariprofundus ferrooxydans PV-1-Mu-like-23,277 nt 22000 6000 8000 10000 12000 14000 16000 18000 20000 22000 24000 26000 28000 30000 32000 34000 36000 38000 MoaA/NifB/PqqE family protein 4000 phage terminase, small subunit phage terminase, large subunit 2000 phage-related DNA-binding protein site-specific recombinase, phage integrase family Similar to sulfur oxidation protein SoxH Nitratiruptor sp. SB155-2-37,734 bp 40000 14000 16000 18000 20000 COG0642 Signal transduction histidine kinase 12000 resolvase putative bacteriophage-related protein 10000 COG5511 Bacteriophage capsid protein COG0150 Phosphoribosylaminoimidazole (AIR) synthetase 8000 COG5283 Phage-related tail protein 6000 COG4220 Phage DNA packaging protein, Nu1 subunit of terminase 4000 Phage terminase GpA 2000 ATP-binding region, ATPase-like COG1758 DNA-directed RNA polymerase, subunit K/omega phage-related integrase response regulator receiver Nitrobacter sp. Nb-311A- prophage 1-20,638 22000 4000 6000 8000 possible glycohydrolase 2000 gene transfer agent (GTA) orfg15, like protein putative phage cell wall peptidase Phage major tail protein gene transfer agent (GTA) like protein gene transfer agent (GTA) like protein Nitrobacter sp. Nb-311A- prophage 2-GTA-like 10000 8000 9000 10000 11000 12000 13000 14000 15000 16000 17000 18000 19000 putative membrane-anchored cell surface protein 7000 tail fiber protein, putative 6000 tail assembly protein, putative 5000 gene transfer agent-like protein 4000 major capsid protein, HK97 family protein 3000 hypothetical protease 2000 portal protein, HK97 family, putative 1000 phage terminase, large subunit, putative prophage LambdaSo, holin, putative Transcriptional regulatory protein, LuxR family protein Nitrobacter sp. Nb-311A- prophage 3-GTA-like 20000 21000 10000 12000 14000 16000 18000 24000 26000 28000 30000 32000 Phage tail protein Phage baseplate assembly protein W 22000 Peptidoglycan-binding LysM 20000 Conserved hypothetical phage tail region protein Phage tail sheath protein 8000 OmpA/MotB 6000 AAA ATPase 4000 Helix-turn-helix, Fis-type 2000 putative transposase CDS CDS Nitrosococcus oceani ATCC 19707-bacteriocin? 34000 36000 14000 16000 18000 sensor histidine kinase 12000 putative DnaJ/CbpA-type protein 10000 Cell wall-associated hydrolases (invasion-associated proteins) 8000 COG5281 Phage-related minor tail protein Rhodobacter capsulatus gene transfer agent (GTA)orfg12 gene transfer agent (GTA) like protein 6000 Phage major capsid protein, phage prohead protease, HK97 family protein 4000 putative portal protein 2000 Phage DNA Packaging Protein possible penicillin-binding protein cation channel family protein Oceanicaulis alexandrii HTCC2633-GTA 20000 22000 6000 8000 serine acetyltransferase 4000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 2000 putative phage tail minor protein major tail protein, TP901-1 family protein head-tail adaptor, putative major capsid protein, HK97 family protein Putative large terminase Oceanicola granulosus HTCC2516-GTA-like 10000 8000 10000 12000 adhesion protein Adp 6000 N-acetylmuramoyl-L-alanine amidase bacteriophage related protein 4000 bacteriophage minor tail subunit 2000 RNA polymerase sigma-70 factor bacteriophage related protein bacteriophage related protein phage-like element PBSX protein XKDA transcriptional repressor of PBSX genes epidermal surface antigen Oceanobacillus iheyensis HTE831??-12,912 bp 14000 12000 14000 16000 18000 20000 22000 24000 Hypothetical transcriptional regulator 10000 Hypothetical bacteriophage replication protein P 8000 COG3203 Outer membrane protein (porin) 6000 COG1196 Chromosome segregation ATPases COG5614 Bacteriophage head-tail adaptor 4000 hypothetical gp36 major capsid-like protein hypothetical ClpP family serine protease, possible phage related 2000 Hypothetical phage portal protein hypothetical terminase encoded by prophage COG1403 Restriction endonuclease Photobacterium profundum 3TCK-26,131 nt 26000 18000 20000 22000 24000 26000 28000 30000 32000 34000 36000 38000 40000 hypothetical transcriptional regulator 16000 hypothetical DNA helicase 14000 hypothetical transposase 12000 hypothetical transcriptional regulator, LysR family 10000 hypothetical transposase 8000 hypothetical terminase large subunit 6000 hypothetical phage portal protein 4000 hypothetical ClpP family serine protease, possible phage related 2000 hypothetical gp36 major capsid-like protein hypothetical phage integrase family Photobacterium profundum SS9 chromosome 242,963 nt 42000 44000 18000 20000 22000 24000 26000 28000 30000 32000 34000 36000 38000 putative toxin secretion ATP-binding protein 16000 putative tail fiber protein 14000 putative endoprotease 12000 putative head-tail connector protein 10000 terminase large subunit 8000 terminase small subunit 6000 putative exodeoxyribonuclease VIII 4000 hypothetical Gifsy-1 prophage 2000 hypotethical transcriptional regulator integrase putative TrkA family protein Photobacterium profundum SS9 chromosome 2-40,505 nt 40000 42000 24000 26000 28000 30000 32000 34000 site-specific recombinase, phage integrase family protein 22000 probable phage protein 20000 probable phage protein uncharacterized phage Mu protein gp47-like protein probable phage protein 18000 COG5283 Phage-related tail protein probable phage protein 16000 probable phage protein probable phage protein 14000 probable phage protein 12000 probable phage small terminase subunit 10000 phage major capsid protein, P2 family protein 8000 probable capsid scaffolding protein 6000 Mu-like prophage FluMu protein gp28 4000 phage portal protein, PBSX family protein 2000 putative phage protein ATP-dependent 26S proteasome regulatory subunit Transcriptional regulator COG1396 Predicted transcriptional regulators COG4197 Uncharacterized protein conserved in bacteria, prophage-related COG0827 Adenine-specific DNA methylase Pseudoalteromonas tunicata D2-36,166 nt 36000 10000 12000 14000 serine acetyltransferase 8000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) Phage-related minor tail protein-like 6000 head-tail adaptor, putative major tail protein, TP901-1 family 4000 phage major capsid protein, HK97 phage prohead protease, HK97 family protein 2000 portal protein, HK97 family Putative large terminase aminodeoxychorismate lyase Rhodobacterales HTCC2150 GTA-14,569 nt 16000 18000 20000 22000 24000 26000 28000 30000 adenine-specific DNA methyltransferase 16000 COG0358 DNA primase (bacterial type) 14000 putative phage terminase large subunit COG4220 Phage DNA packaging protein, Nu1 subunit of terminase 12000 putative phage terminase large subunit 10000 COG5511 Bacteriophage capsid protein 8000 Peptidase U7 6000 tail assembly protein, putative 4000 tail fiber protein, putative 2000 probable phage-related lysozyme Site-specific recombinase XerD-like DNA-binding protein, putative Rhodobacterales HTCC2654-31,840 nt 32000 12000 14000 serine O-acetyltransferase 10000 possible cytochrome P450 hydroxylase superfamily proteins 8000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 6000 putative phage tail minor protein 4000 head-tail adaptor, putative major tail protein, TP901-1 family protein 2000 putative portal protein phage prohead protease, HK97 family protein major capsid protein, HK97 family protein Putative large terminase Rhodobacterales HTCC2654-GTA 16,708 nt 16000 10000 12000 14000 serine O-acetyltransferase 8000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) COG5281 Phage-related minor tail protein 6000 major tail protein, TP901-1 family head-tail adaptor, putative 4000 phage major capsid protein, HK97 phage prohead protease, HK97 family protein 2000 phage portal protein, putative Putative large terminase COG0464 ATPases of the AAA+ class CDS COG1559 Predicted periplasmic solute-binding protein Roseobacter CCS2 GTA 16000 8000 10000 12000 14000 serine acetyltransferase Putative phage tail minor protein 6000 major tail protein, TP901-1 family protein phage head-tail adaptor, putative 4000 phage major capsid protein, putative 2000 phage prohead protease, putative Terminase, lg subunit 3-oxoacyl-(acyl carrier protein) synthase II aminodeoxychorismate lyase Roseobacter denitrificans Och114-GTA-13,783 nt 16000 32000 34000 36000 38000 40000 42000 44000 46000 CDS 30000 prophage MuMc02, head decoration protein, putative 28000 SEC-C motif protein 26000 host specificity protein J, internal deletion 24000 Potential phage tail tape measure protein 22000 putative protease/scaffold protein probable bacteriophage-related protein 20000 COG5511 Bacteriophage capsid protein 18000 COG5525 Bacteriophage tail assembly protein 16000 DNA methylase N-4/N-6 14000 restriction endonuclease 12000 putative DEAD box family helicase, phage associated 10000 hypothetical protein hypothetical protein 8000 COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 6000 COG0474 Cation transport ATPase 4000 putative bacteriophage-related protein resolvase 2000 very short patch repair protein (DNA mismatch endonuclease) COG0270 Site-specific DNA methylase COG3183 Predicted restriction endonuclease COG0553 Superfamily II DNA/RNA helicases, SNF2 family Roseobacter MED 193-47,496 nt 48000 10000 12000 14000 serine O-acetyltransferase 8000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) putative phage tail minor protein 6000 major tail protein, TP901-1 family protein head-tail adaptor, putative 4000 major capsid protein, HK97 family protein phage prohead protease, HK97 family protein 2000 portal protein, HK97 family protein terminase, large subunit, putative CDS Roseobacter MED 193-14,668 nt-GTA 16000 22000 24000 26000 28000 30000 32000 34000 36000 38000 N6 adenine-specific DNA methyltransferase, N12 class 20000 tail fiber protein, putative 18000 tail assembly protein, putative 16000 major capsid protein, HK97 family 14000 Periplasmic serine protease 12000 portal protein, HK97 family, putative 10000 hypothetical phage terminase large subunit 8000 prophage LambdaSo, holin, putative 6000 transcription antitermination protein NusG 4000 putative replication protein 2000 acetyltransferase, putative Integrase putative transport protein Roseobacter sp. SK209-2-6-41,094 bp 40000 42000 44000 12000 14000 serine O-acetyltransferase 10000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 8000 putative phage tail minor protein major tail protein, TP901-1 family protein 6000 head-tail adaptor, putative 4000 major capsid protein, HK97 family protein COG1196 Chromosome segregation ATPases phage prohead protease, HK97 family protein 2000 portal protein, HK97 family protein Putative large terminase oxidoreductase, FAD-binding protein Roseovarius nubinhibens ISM-GTA-13,917 bp 16000 12000 14000 16000 type I secretion target repeat protein 10000 type I secretion target repeat protein 8000 adenylosuccinate lyase adenylosuccinate lyase 6000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) putative phage tail minor protein 4000 head-tail adaptor, putative major tail protein, TP901-1 family protein 2000 major capsid protein, HK97 family protein phage prohead protease, HK97 family protein portal protein, HK97 family protein carbon monoxide dehydrogenase operon C protein Roseovarius sp 217 Defective GTA12,339 bp 18000 8000 10000 12000 14000 COG1131 ABC-type multidrug transport system, ATPase component 6000 HNH nuclease / Probable phage PHI-105 holin-like protein Uncharacterized phage protein (possible DNA packaging) Phage protein, HK97 phage head-tail adaptor, putative phage terminase, small subunit, putative, P27 phage Terminase 4000 peptidase U35, phage prohead Phage major capsid protein 2000 Phage portal protein trigger factor autoinducer-binding transcriptional regulator LuxR autoinducer synthesis protein Roseovarius sp 217 Second GTA rearranged-17,038 bp 16000 16000 18000 20000 22000 24000 26000 28000 30000 32000 34000 Phage-related lysozyme 14000 tail fiber protein, putative CDS 12000 tail assembly protein, putative 10000 phage-related tail protein 8000 Periplasmic serine protease 6000 Bacteriophage capsid structural protein 4000 prophage LambdaW1, terminase large subunit, putative 2000 COG0358 DNA primase (bacterial type) COG1396 Predicted transcriptional regulators Prophage integrase adenine-specific DNA methyltransferase Roseovarius sp. HTCC2601-36,890 bp 36000 38000 10000 11000 12000 13000 14000 15000 16000 serine O-acetyltransferase 9000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 8000 putative phage tail minor protein 7000 major tail protein, TP901-1 family 6000 putative phage tail-head adaptor 5000 major capsid protein, HK97 family 4000 phage prohead protease, HK97 family protein 3000 portal protein, HK97 family 2000 GCN5-related N-acetyltransferase 1000 terminase, large subunit, putative NAD(P)+ transhydrogenase, beta subunit Roseovarius sp. HTCC2601-GTA 15,873 bp 17000 14000 16000 18000 Periplasmic serine protease 12000 Bacteriophage capsid structural protein 10000 prophage LambdaW4, terminase large subunit, putative 8000 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 6000 COG2932 Predicted transcriptional regulator 4000 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 2000 Bacteriophage phi 1.45 protein-like protein DNA-binding response regulator CtrA Integrase tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Roseovarius sp. HTCC2601-3rd prophage-23,647 bp 20000 22000 24000 10000 12000 14000 dnaK suppressor protein, putative serine acetyltransferase 8000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) Phage-related minor tail protein-like 6000 head-tail adaptor, putative major tail protein, TP901-1 family 4000 Predicted phage phi-C31 gp36 major capsid-like protein phage prohead protease, HK97 family protein 2000 portal protein, HK97 family terminase, large subunit, putative aspartate aminotransferase Sagittula stellata E-37-GTA 14,778 nt 16000 10000 12000 14000 dnaK suppressor protein, putative cysE 8000 putative phage tail minor protein major tail protein, TP901-1 family 6000 head-tail adaptor, putative 4000 major capsid protein, HK97 family phage prohead protease, HK97 family 2000 portal protein, HK97 family terminase, large subunit, putative Silicibacter pomeroy GTA-13,968 bp 16000 54000 56000 58000 60000 26000 62000 28000 64000 30000 66000 32000 68000 34000 70000 36000 72000 Resolvase-like 24000 KEGG: nwi:Nwi_1140 phage integrase, ev=1e-24, 29% identity 22000 ParB-like nuclease transcriptional regulator, XRE family Phage portal protein, HK97 20000 phage integrase 52000 18000 C-5 cytosine-specific DNA methylase 50000 16000 HNH nuclease 48000 14000 endodeoxyribonuclease RusA adenine-speci fic DNA methyltransferase 46000 12000 single-strand binding protein 44000 10000 phage Terminase 42000 8000 Phage portal protein, HK97 40000 6000 peptidase U35, phage prohead HK97 38000 4000 peptidase S49 Phage conserved hypothetical protein, phiE125 gp8 2000 phage major capsid protein, HK97 36000 Resolvase-like : nwi:Nwi_1140 phage integrase, ev=1e-24, 29% identity Silicibacter TMS1040-Prophage 1-75,835 nt 38000 74000 40000 42000 44000 46000 48000 500 22000 24000 26000 phage integrase 20000 BRO-like 18000 type I restriction-modification system, M subunit 16000 restriction modification system DNA specificity domain 14000 type I site-specific deoxyribonuclease, HsdR family 12000 BRO-like 10000 putative transcriptional regulator 8000 phage integrase 6000 N-6 DNA methylase 4000 restriction modification system DNA specificity domain 2000 type III restriction enzyme, res subunit phage integrase transposase IS3/IS911 Integrase, catalytic region Silicibacter TMS1040-Prophage 2-29,886 nt 28000 26000 28000 30000 32000 34000 36000 CDS CDS phage late control D 24000 phage tail sheath protein 22000 phage major tail tube protein 20000 putative secreted serine protease 18000 YP_613289.1 PAAR Baseplate J-like protein Phage tail protein I putative variable tail fibre protein 16000 YP_613291.1 14000 peptidase U35, phage prohead HK97 12000 phage portal protein, lambda 10000 phage terminase GpA 8000 phage DNA packaging Nu1 6000 glycoside hydrolase, family 24 4000 putative phage repressor 2000 Ankyrin phage integrase Silicibacter TMS1040-Prophage 3-40,151 nt 38000 40000 24000 26000 28000 30000 32000 34000 36000 38000 40000 42000 transcriptional regulator, LysR family 22000 two component transcriptional regulator, LuxR family response regulator receiver protein PAS/PAC sensor signal transduction histidine kinase 20000 Tape measure domain 18000 transcriptional regulator, XRE family 16000 phage putative head morphogenesis protein, SPP1 gp7 14000 Terminase large subunit 12000 Terminase small subunit 10000 single-strand binding protein 8000 endodeoxyribonuclease RusA 6000 putative phage repressor 4000 exonuclease ERF 2000 phage integrase ATP-dependent protease La Silicibacter TMS1040-Prophage 4-41,671 nt 44000 12000 14000 serine O-acetyltransferase 10000 cold-shock DNA-binding domain protein 8000 Putative phage cell wall peptidase, NlpC/P60 6000 CDS 4000 Head to tail adaptor Phage major tail protein, TP901-1 phage major capsid protein, HK97 2000 peptidase U35, phage prohead HK97 Phage portal protein, HK97 Terminase large subunit Silicibacter TMS1040-Prophage 6-16,000 nt-GTA 16000 12000 14000 16000 18000 OmpA/MotB 10000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 8000 COG5281 Phage-related minor tail protein 6000 phage major capsid protein, HK97 4000 peptidase U35, phage prohead HK97 2000 Phage portal protein, HK97 Terminase large subunit leucine aminopeptidase-related protein Sphingomonas sp. SKA58-19,061 bp-GTA? 20000 24000 26000 28000 30000 putative bacteriophage tail protein COG5004 P2-like prophage tail protein X SIAM614_13153 putative endonuclease 22000 phage-related tail protein 20000 COG3498 Phage tail tube protein FII 18000 phage-related contractile tail sheath protein 16000 putative tail fiber-related protein 14000 Virulence-associated protein 12000 Phage protein gp27 10000 COG4540 Phage P2 baseplate assembly protein gpV COG3628 Phage baseplate assembly protein W COG3948 Phage-related baseplate assembly protein 8000 probable Clp protease protein 6000 Putative capsid protein of prophage 4000 COG5525 Bacteriophage tail assembly protein 2000 DNA primase DNA primase DNA polymerase III subunit beta DNA methylase N-4/N-6 Stappia aggregata IAM 12614-32,622 bp 32000 12000 14000 serine O-acetyltransferase 10000 COG0791 Cell wall-associated hydrolases (invasion-associated proteins) 8000 putative phage tail minor protein 6000 head-tail adaptor, putative major tail protein, TP901-1 family protein 4000 phage prohead protease, HK97 family protein major capsid protein, HK97 family protein putative portal protein 2000 terminase, large subunit, putative 3-oxoacyl-(acyl carrier protein) synthase Sulfitobacter sp. NAS-14 GTA-14,257 bp 16000 16000 18000 20000 22000 24000 26000 phage-related endolysin 14000 COG3210 Large exoproteins involved in heme utilization or adhesion 12000 COG0840 Methyl-accepting chemotaxis protein 10000 putative prophage LambdaSo, major capsid protein, HK97 family protein 8000 putative ClpP-like protease 6000 putative phage portal protein, HK97 family protein 4000 Putative Phage-related terminase 2000 COG1396 Predicted transcriptional regulators site-specific integrase/recombinase-like Sulfitobacter sp. NAS-14 Phage? 28,880 bp 28000 12000 14000 16000 18000 20000 Transposase (class II) 10000 putative bacteriophage lysozyme 8000 transposase 6000 putative transposase 4000 sigma factor SigF 2000 Terminase DNA-binding protein, putative COG3617 Prophage antirepressor prophage CP4-like integrase Synechococcus sp. 5701-21,831 bp 22000 30000 32000 34000 36000 38000 40000 RluD 28000 RNasE 26000 GpU Phage tail X GpD Tyrosine phosphatase 24000 Tape Measure 22000 Tail sheath Phage major tail tube 20000 Baseplate assembly GP25 BaseplateJ Tail protein Tail fiber 18000 Minor tail protein 16000 Minor capsid 14000 Portal 12000 Terminase 10000 exoIII CDS Hypothetical protein 8000 Primase 6000 CI repressor 4000 DNA Ligase 2000 Cyt C5 DNA Methyl Int RluD Thioimicrospira crunogena XCL-2-38,090 bp 42000 putative integrase 28000 30000 32000 34000 36000 putative large secreted protein 26000 tail assembly protein, putative Putative tail fiber component V of prophage 24000 minor tail protein 22000 putative major capsid protein Putative head-DNA stabilization protein of prophage 20000 Putative capsid protein of prophage 18000 putative portal protein 16000 putative head-tail joining protein of prophage 14000 putative DNA packaging protein of prophage 12000 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 10000 putative lysozyme 8000 transcriptional regulator, XRE family protein putative DNA-binding protein Roi 6000 Unknown protein encoded by cryptic prophage 4000 putative cI prophage repressor protein prophage LambdaSo, transcriptional regulator, Cro/CI family protein COG0642 Signal transduction histidine kinase 2000 CPS-53 (KpLE1) prophage putative transposase Vibrio alginolyticus 12G01-36,811 nt 38000 28000 30000 putative phage R protein putative phage tail protein 26000 tail sheath protein major capsid protein precursor 24000 probable capsid scaffolding protein 22000 terminase, ATPase subunit 20000 probable capsid portal protein 18000 L-alanyl-D-glutamate peptidase 16000 putative phage tail protein 14000 phage protein 12000 putative phage baseplate assembly protein phage protein 10000 putative phage tail protein 8000 exodeoxyribonuclease VIII 6000 hypothetical bacteriophage protein 4000 possible phage regulatory protein (CII) 2000 transcriptional regulator, Cro/CI family DNA integration/recombination/invertion protein methyl-accepting chemotaxis protein V. fischeri prophage – 29,712 bp 32000 34000 30000 32000 antitermination protein Q 28000 putative repressor protein 26000 putative replication protein RepA 24000 transcriptional regulator 22000 protelomerase 20000 parA protein 18000 putative exonuclease 16000 phage protein U-like phage tail X YP_001039846.1 DNA adenine methylase 14000 phage-related tail protein 12000 putative tail tube protein 10000 phage tail sheath protein FI-like phage tail protein I tail fiber protein 8000 putative baseplate assembly protein 6000 phage baseplate assembly protein V prophage LambdaW5, minor tail protein Z 4000 major capsid 2000 Portal protein putative phage terminase large subunit Vibrio parahaemolyticus phage VP882-38,197 bp 34000 36000 38000 putative capsid protein putative portal protein putative terminase large subunit terminase small subunit adenine methyltransferase adenine methyltransferase cI repressor of prophage CP-933V putative DNA primase putative protelomerase putative partition protein putative exonuclease protein antirepressor tail protein tail protein tail protein tail length determinator protein tail contractile sheath protein tail tube protein tail protein reverse transcriptase/maturase/transposase baseplate spike protein baseplate assembly protein baseplate assembly protein baseplate assembly protein tail fibre protein putative capsid protein putative portal protein putative terminase large subunit terminase small subunit adenine methyltransferase Vibrio harveyi Phage VHML-43,198 nt CDS Note-like bacteriophage f237 40000 42000 44000 46000 putative solute/DNA competence effector CDS 38000 tail-specific protease 36000 CDS 34000 aminopeptidase N 32000 CDS 30000 putative NAD-glutamate dehydrogenase 28000 dihydroorotate dehydrogenase 26000 putative N6-adenine-specific DNA methylase 24000 ABC transporter, ATP-binding protein 22000 CDS 3-hydroxydecanoyl-ACP dehydratase ribosome modulation factor 20000 putative phage protein, Vpf148 [bacteriophage VfO3K6] 18000 putative phage replication initiation protein (Alteromonas phage PM2) 16000 hypothetical protein (Alteromonas phage PM2) 14000 putative major phage capsid protein 12000 putative phage-related protein 10000 putative structural protein P5 (Alteromonas phage PM2) 8000 bacteriophage f237 ORF9 6000 bacteriophage f237 ORF8 bacteriophage f237 ORF7 4000 bacteriophage f237 ORF6 2000 bacteriophage f237 ORF1 bacteriophage f237 ORF2 bacteriophage f237 ORF3 bacteriophage f237 ORF4 bacteriophage f237 ORF5 bacteriophage f237 ORF10 sensor histidine kinase/response regulator V. Parahaemolyticus RMID2210633 Cr. I-47,981 nt 48000 14000 16000 18000 sensor histidine kinase 12000 transcriptional regulator 10000 putative universal stress protein A 8000 putative transcriptional regulator 6000 putative phage-related protein 4000 putative replication initiation protein, phage-related 2000 putative major phage capsid protein P2 putative phage structural protein (Alteromonas PM2) V. Parahaemolyticus RMID2210633 Cr.II-19,424 nt 20000 14000 16000 22000 30000 32000 phage integrase 28000 Phage protein U-like Phage protein D-like 26000 tail tape measure protein 24000 Phage tail sheath protein FI-like Phage baseplate assembly protein V COG3628 Phage baseplate assembly protein W Baseplate J-like protein Phage tail protein I probable pyocin R2_PP, tail fiber protein 20000 prophage LambdaW5, minor tail protein Z, putative 18000 ATP-dependent protease putative portal protein 12000 Terminase large subunit 10000 putative phage lysozyme 8000 COG0541 Signal recognition particle GTPase 6000 Putative repressor protein of prophage 4000 COG2183 Transcriptional accessory protein 2000 COG0497 ATPase involved in DNA repair integrase, putative Vibrio splendidus 12B01-First prophage-35,675 nt 34000 28000 A/G-specific DNA glycosylase 26000 Phage-related tail fiber protein 24000 putative bacteriophage protein. 22000 putative phage gene 20000 COG3299 Uncharacterized homolog of phage Mu protein gp47 18000 prophage PSPPH06, tail tape measure protein, TP901 family 16000 prophage PSPPH06, putative tail tube protein COG1734 DnaK suppressor protein putative phage lysozyme COG0642 Signal transduction histidine kinase 14000 prophage PSPPH06, putative tail sheath protein 12000 prophage PSPPH06, putative head completion/stabilization protein putative phage gene prophage PSPPH06, virion morphogenesis protein 10000 putative phage gene 8000 putative phage gene 6000 putative phage gene 4000 COG5518 Bacteriophage capsid portal protein 2000 hypothetical bacteriophage protein Predicted transcriptional regulator Integrase Vibrio splendidus 12B01-Second prophage 30000 32000 24000 26000 28000 30000 32000 34000 36000 probable DNA-directed RNA polymerase, beta' subunit/160 kD subunit; COG0086 Bacteriophage phi 1.45 protein-like protein Predicted transcriptional regulator 22000 ATP-dependent 26S proteasome regulatory subunit 20000 Bacteriophage phi gp55-like protein Site-specific recombinase XerC 18000 Predicted transcriptional regulator Predicted transcriptional regulator 16000 Phage protein U P2-like prophage tail protein X Phage protein D 14000 A/G-specific DNA glycosylase Phage tail sheath protein FI Phage tail tube protein FII 12000 Phage-related tail fiber protein 10000 dTDP-glucose pyrophosphorylase Phage-related baseplate assembly protein Bacteriophage P2-related tail formation protein 8000 Phage P2 baseplate assembly protein gpV 6000 Chromosome segregation ATPase 4000 ATPase component of ABC transporter 2000 Uncharacterized phage-associated protein Site-specific recombinase XerD Co-chaperonin GroES Vibrio vulnificus CMCP6 chromosome I-39,325 bp 38000
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