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chromosome
coding
strand
pc0266
pc0265
pc0264 - lgrA
pc0263
pc0262
16 LRRs
pc0972 pc0971
pc0970 - lgrB
pc0969
pc1064
pc1065 - lgrC
pc1341 - lgrD
pc1342
pc1455 - lgrE
-
L
leading
+
L
lagging
+
L
lagging
-
L
leading
-
L
leading
pc1454 pc1453
18 LRRs
pc1613 pc1612
lagging
pc1343
15 LRRs
pc1457 pc1456
R
pc1066 pc1067
5 LRRs
pc1339 pc1340
pc0968
8 LRRs
pc1063
arm
pc1610 pc1609
pc1611 - lgrF
8 LRRs
1 kb
Additional file 10.
Gene maps of the immediate neighborhood of the six lgr genes of P. amoebophila presenting the two closest genes on each side of the
lgrs and the associated intergenic spaces (pcxxxx standing for protochlamydia protein number xxxx). All maps were normalized to the
transcription direction of the lgr genes. The genes drawn upwards or downwards are encoded on the lgr encoding strand or its
complementary strand. The narrow boxes of various sizes and colors represent different homologous regions (BLASTN: cutoff  0.05).
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