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Succinylbenzoate Pi PPi NADH Pi H2O D-Glutamate NAD+ dIDP dITP L-Glutamate cAMP H2O H2O2 ATP O2 Thioredoxin Oxidized ADP ATP ADP dADP dATP Pi Thioredoxin NADP+ Reduced NADPH IDP RNA Adenylo succinate ITP PPi Cyt C ATPase Fd(red) PPPi 2,5-Diamino-6(5'-phosphoribosylamino) 4-pyrimidineone Fd(ox) GTP Ribo�avin Metabolism 5-Amino-6(5'-phosphoribitylamino) uracil GDP cGMP 5-Amino-6(5'-phosphoribosylamino) uracil H+ ADP XMP GMP Protein 6,7-Dimethyl 8-(1-D-ribityl) lumazine H2 H2O ATP L-Glutamate FNP-acetamidine N-Formyl GAR 2-Hydroxy phenylacetate PhPyr FMN H+ F6P Prephenate X5P R1P PRPP D-Ribose 4-Aminobenzoate FAD ATPase Anthranilate Chorismate ADC Acetaldehyde 6-Pyruvoyltetra hydropterin Dihydroneopterin Sedoheptulose 1,7-PP Deoxyribose Indoleglycerol-P Shikimate L-Serine G3P Indole Glycolate -hydroxy methyl opteridine G3P E4P L-Serine 3-Dehydroshikimate 3-Dehydroquinate DHAP DAHP PEP 7,8-Dihydropterin pyrophosphate L-Tryptophan CO2 THF-L-glutamate Folinic acid Formate THF Dihydrofolate Oxalate 5-Methyl-THF Protein Dihydropteroate X5P Shikimate-3-P Dihydroneopterin-Phosphate Glycolaldehyde S7P Glycine 10-Formyl-THF 5,10-Methenyl-THF Glyoxylate Glycolate 2-Hydroxy-3-oxopropanoate THF S-Lactoyl glutathione 2PG 5,10-Methylene-THF Mercaptopyruvate Protein L-Serine Glycerone Pyruvate HPYR L-Cysteine Cys-Gly gamma-Glutamyl cysteine Glutathione(red) L-Cysteine Acetyl-serine sn-Glycerol-3-P Acetate H2S Glycine Glycerol 5,10-Methylene-THF NADP+ ADP Adenosyl cobinamide-P Adenosine-GDP cobinamide Vitamin B12 coenzyme Nicotinamide NMN NAD+ Nicotinate ribonucleotide Deamino-NAD+ UAGMDA Undecaprenyl-PP UDP-N-acetylmuramoyl-L-alanyl D-glutamyl-6-carboxy-L-lysyl D-alanyl-D-alanine Undecaprenyl-P Heptanedioate LL-2,6-Di aminopimelate 2-oxoglutarate THDP Succinyl-CoA 23DHDP L-Glutamate UDP-N-acetylmuramoyl L-alanyl-D-glutamate Homoserine NADP+ NADPH sn-Glycerol-3-P 2,3-Butanediol MGDG CO2 2-Acetolactate Pyruvate Hexadecanoyl-ACP CO2 2-oxobutanoate (S)-2-Aceto-2hydroxybutanoate S-Adenosylhomocysteine sn-Glycerol-3-P Adenosine-3,5-PP UDP SQDG (R)-2,3-Dihydroxyisovalerate Lipid(16:0) Isoleucine Valine Leucine Sul�te UDP Lipid(16:0) Glucose 6PGL G6P Pentose Phosphate Pathway Fructose GlcGlycP G1P F6P D-Glucosamine 6-P FBP M6P G3P Thioredoxin Oxidized α-Isopropylmalate 2-Ketovaline L-Glutamate 2-oxoglutarate DHAP Calvin Cycle 13DPG PG3 23DPG dTDP 3PHP NADPH 3,4-Dihydroxyphenyl ethyleneglycol L-Lactaldehyde (S)-Propan N4-Acetylamino butanal 4-Acetamido butanoate PG2 PEP F1P dTMP dUMP Lactate NADP+ UDP-MurNAc UDP-N-acetyl D-glucosamine UDP-N-acetyl-3-(1-carbo xyvinyl)-D-glucosamine UDP-2,3-bis(3-hydroxy tetradecanoyl) glucosamine ACP Pyruvate CDP CMP CYTD dUTP dUDP UTP CSN UMP Uracil Orotate 3,4-Dihydroxy-2-butanone 4-P HMA UDP-3-O-(3-hydroxy tetradecanoyl) D-glucosamine Ru5P 6PG UDP-3-O-(βhydroxymyristoyl) N-acetylglucosamine Fluxes and Fluctuations in Biochemical Models 6PGL G6P F6P M6P M1P DHAP dTTP Thiamin Calvin Cycle Thiamine-P PPi 1-deoxy-D-xylulose 2-C-Methyl-D-erythritol 2,4-cyclodiphosphate ADP-Glc D-Glucosamine 6-P G3P 13DPG PG3 RuBP 4-Methyl-5- 23DPG dTDP 3PHP Thymd PG2 Glycerate PEP F1P Glyceraldehyde 2-Phospho-4-(cytidine 5'-PP) 2-C-methyl-D-erythritol PRPP G1P Glycolysis 4-(Cytidine 5'-diphospho) 2-C-methyl-D-erythritol PRPP GlcGlycP FBP 4-methyl-5-(2-phos phoethyl)-thiazole 2mahmp 2-C-Methyl-D-erythritol 4-P H2O Glucose Pentose Phosphate Pathway Fructose G3P 1-Deoxy-D-xylulose-5-P Maltose dTMP Methylglyoxal dUMP S-Lactoyl glutathione Pyrimidin Pyruvate L-Alanine 1-Hydroxy-2-methyl 2-butenyl 4-PP Lactate Timo Maarleveld DAMPP Acetyl-P Succinate Acetate Citrate Acetaldehyde cis-Aconitate Fumarate Ethanol iso-Citrate Isopentenyl-PP PPi Fumarate Dihydroorotate L-Aspartate Protein N-Carbamoyl L-aspartate NH4 Cyanate CO2 HCO3 AcCoA Oxalo acetate β-Alanine Undecaprenyl-PP PPi aldehyde Isopentenyl-PP all-trans Decaprenyl-PP 2-oxoglutarate Succinate Glutamyl-5-P L-Glutamate Glutamate-5-SA P5C L-Proline Succinyl-CoA Succinate-SA L-Methionine L-Glutamate Biotin 7,8-Diaminononanoate Vitamin B6 Pyridoxamine Pyridoxamine 5'-P Pyridoxal Pyridoxal 5'-P Pyridoxine Pyridoxine 5'-P 4-Guanidino butanamide 4-Guanidino butanoate Hydroxyproline 2-oxoglutarate Acetaldehyde cis-Aconitate Malate iso-Citrate Fumarate 2-oxoglutarate Succinate Protein Succinyl-CoA 1-Pyrroline-3-hydroxy L-Cystathionine 5-carboxylate CoA Succinate-SA L-Methionine Ornithine Carbamoyl-P Acetyl-Glutamate Urea Cycle Acetyl-Glutamate 4-Aminobutanal H20 Protein 2-oxoglutarate Succinate AcCoA 4-Aminobutanoate 2-oxoglutarate Urea S-Adenosylmethionine L-Glutamate Acetate Citrate Thursday December 17th, 2015 TCA Cycle 9:45 Carbamoyl-P L-Glutamine TCA Cycle Dethiobiotin d de Phosphoribosyl-AMP UDP PPi Ø Phosphoribosyl-formimino AICAR-phosphate Phosphoribosyl-ATP GDP-L-fucose DNA Acetyl-Glutamate-5-P Erythro-4 Hydroxyglutamate Pi Acetyl-Glutamate-5-SA Acetylornithine 4-Guanidino butanal FADH2 FAD Guanidino L-Arginine 2-oxopentanoate Aula Vrije Universiteit Amsterdam Vitamin B6 De Boelelaan 1105 Dethiobiotin Pyruvate Arginino-succinate 7,8-Diaminononanoate Glyoxylate Pyridoxamine Pyridoxamine 5'-P Pyridoxal Pyridoxal 5'-P Pyridoxine Pyridoxine 5'-P Fumarate Protein Agmatine Urea Putrescine 2-ox 4-Aminobuta S-Adenosylmethionine 4-Hydroxy 2-oxoglutarate Urea L-Glutamate Biotin L-Citrulline L-Glutamate L-Glutamate 2-oxoglutarate PAPS Thioredoxin APS Reduced N-Acetyl D-mannosamine Orotidine-5-P PPi Acetyl-P Oxalo acetate Protein UDP-N-acetylmuramoyl L-alanine N-Acetyl-Dglucosamine-1-P dCDP α-Ribazole Imidazole-acetol-P Phosphoribosyl-formimino AICAR-phosphate Sterol Metabolism dCTP Ø L-Histidinol-P D-erythro-Imidazole glycerol-phosphate 2-Octapre D-Ribose S-Lactoyl glutathione AcCoA Malate Cyanophycin(n+2) GDP-4-dehydro D-rhamnose Cyanophycin(n) to attend the public defense Histidine Synthesis of my Ph.D. dissertation LipidX Branched Glycogen GDP-Mannose Ø UDP-N-acetylmuramoyl L-alanyl-D-glutamate Storage Products D-Glucosamine 1-P Invitation L-Histidinol D-Tagatose Galactose GlcGlyc Glycogen Ø Growing PHB granule L-Histidinine RNA Methylglyoxal Pyruvate DNA Protein UDPMurA Glu-L-Lys- D-Tagatose 6-phosphate Sucrose Cyanophycin(n+2) Pyrimidine Metabolism L-Alanine UDP-N-acetylmuramoyl Lalanyl-D-glutamyl-L-lysine dTDP-L-rhamnose α-D-Galactose 1-phosphate CTP Thymd (S)-3-Methyl-2-oxopentanoate L-Glutamate 2-oxoglutarate M1P dTTP β-aminopropion aldehyde AMP ADP-Glc Glycolysis β-Alanine (R)-2,3-Dihydroxy 3-methylvalerate Lipid(16:0) 2-Dehydropantoate DGDG L-Homocysteine 3,4-Dihydroxy mandelaldehyde Sucrose-6-P d UDP UDP-Gal R-Acetoin CO2 Acetate L-Threonine Ø CDP-Glc L-Cystathionine Protein UDP-6-sulfo quinovosel 1,2-Diacyl sn-glycerol UDP-Gal S-Adenosyl L-homocysteine H2S Lipid(16:0) ACP Hexadecanoyl-ACP ACP CTP 1,2-Diacyl 1-Acyl-sn-glycerol-3-P sn-glycerol-3-P 6PG Pyruvate D-Ala-D-Ala 8-Amino-7 nonanoate UDP-Gal l ve rle CDP-diacyl glycerol PPi PG Aspartate-SA H2O P-Homoserine Phosphatidyl glycero-P CMP 4-P-Aspartate Pimeloyl-CoA Sink Reactions AMP dTDP-Gal UDP-Glc aa UAAGMDA L-Lysine L-Aspartate Maltose Glycerate Timo Maarleveld Peptidoglycan Protein R5P Iminoaspartate Phenylacetic acid 3-Octaprenyl-4-hydroxybenzoate M UDP UDP-N-acetyl D-glucosamine meso-Di amino heptanedioate DHAP N-Succinyl-L-2amino-6-oxopimelate CoA )-1-Aminopropane 2-yl phosphate AMP Pi Quinolinate N-Succinyl-L-2,6 diaminopimelate 1,5-Diaminopentane ADPribose PRPP 2-Phenylacetamide UDP-6-sulfoquinovosel o Vitamin B12 PPi ATP L-Asparagine Nicotinamide metabolism PRPP PPi 3-Hydroxy-2 methylpropanoate Ø Inositol DNA Imidazole- R1P Adenine (S)-Methyl semialdeh Imidazole-4-acetaldehyde Indole-3-acetaldehyde dTDP-4-oxo-L-rhamnose dTDP-Glc Phosphoribosyl-AMP RuBP D-Alanine Inositol 1-phosphate Phosphoribosyl-formimino AICAR-phosphate Phosphoribosyl-ATP Glyceraldehyde D-Ala-D-Ala Indole-3-acetate Imidazole-acetol-P m Ti Glutathione(ox) S-Methyl-5-thio-Ru1P Ø oc Folate Metabolism F6P Ø Cyanophycin(n+2) Bi 2-deoxy D-ribose 5-P Ø Histidine Synthesis Ru5P 1-(2-Carboxyphenylamino) 1-deoxy-D-ribulose 5-P hydroneopterin R5P G3P 5-O-(1-Carboxyvinyl) 3-phosphoshikimate GTP H+[t] E4P Indole-3-acetamide ns tio ua ls ct de Flu l Mo nd ica sa m xe he Chorismate N-(5-Phospho-D-ribosyl) anthranilate G3P PHB granule dTDP-4-oxo-6 deoxy-D-glucose 3,4-Dihydroxy-2-butanone 4-P Pyruvate Ø L-Histidinol-P in Cyt C DNA 5-methylcytosine Ø Cyanophycin(n) PPi Demethylphylloquinone S-Adenosylmethionine α-Ribazole S-Adenosylhomocysteine Vitamin K1 5-phospho Phosphoribosyl-formimino ribosylamine AICAR-phosphate GAR Growing PHB granule Phytyl diphosphate Protein D-erythro-Imidazole glycerol-phosphate Purine Metabolism Ø Flu ADP 4-Hydroxyphenyl pyruvate 1,4-Dihydroxy 2-naphthoate L-Histidinol Toxopyrimidine L-Phenylalanine dATP Demand Reactions AMP L-Histidinine 5-Amino-4-imidazole carboxyamide AIR DNA 2-oxoglutarate NADP+ Fd(red) 10-Formyl-THF Protein L-Tyrosine Homogentisate THF AICAR P-ribosyl-CAminoimidazole dGTP 5-Amino-6(1-D-ribitylamino) uracil Ribo�avin FAICAR SAICAR Deoxyguanosine dGDP ATP IMP DNA Adenine H+[p] Succinylbenzoyl-CoA Modeling dAMP Sink Reactions R1P Adenosine AMP DNA FLUXES AND FLUCTUATIONS IN BIOCHEMICAL MODELS Protein Modeling dAMP 4-Guanidino butanamide
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